Blast DNA databases (blastn)
Default parameters
Sequence
>11640| ATGACGAATCGCCAAGAGCGAACGATTAAGTTACGAGTACCCCATCGTACTGCCGTGCAACCAACTCCCGACCTACCGGTAGTGCTCGCGCTCCTCGCACTGCCGTTCGTCGCCGCCGCACTCACGCCGCTCGTCCATCGGGCACTGGGCGAACGCACGGCGTACTTCGCGGCGGCCGTGGCGCTCGCCTGTTTCGGGCTCGCCGCGTCCCAGTACGGAACGGAGGGTGTCGTCTCCGTCGCGTGGATTCCCGCGCTCGACGTCTCGCTCAGCCTCTACGTTGACGGGCTCTCCCTGCTCGTCGCCTTTCTCGCGTCCGGCGTGGGCGTGCTCGTGTTCACGTACTCCGCGGGCTACATGCACGGCGAACCCGGCCTCGCGAAGTACTACGCGACCCTGCTCGCGTTCATGGGGTCGATGCTCGGGGTCGCGCTCGCCGCGGACCTCGTCGCGCTCTTCGTGTTCTGGGAGCTCACCAGCATCGCCTCCTTCGTCCTCATCGGCCACTACTCGAGTCAGGACTCGGCGCTGTACGCCGCCCGAAAATCCATGTTCGTCACCGTCGGCGGCGGCCTGTTCATGCTCGTGGGATTCGTCCTGCTCGCGAACGCCACCGGGACGTTCAGCATCGCGACGATGCTCGACCGGCCCGAACTCGTCCGGGAGGCCCTGCGCTCGCAGGGCGTCCTCTTACCCGTCGTCGTTCTCGTGGGGGTCGGCGCGGCGGCGAAGTCCGCACAGGTTCCGCTCCACATCTGGCTCCCGGACGCGATGGAGGCCCCGACGCCCGTGTCCGCGTTCCTCCACTCTGCGACGATGGTGAAAGCCGGCGTCTACCTCGTCGGCCGCCTCCGCCCCGTTCTCGTCACGGACGAGTGGACACTCCTCTTCGCGGCGCTCGGCCTCACTACGATGACCGTCGCCGCCGTGTTGGCTATCGCCGCGACCGACATCAAGCAACTGCTCGCGTACTCCACCGCGAGCCACCTCGGCCTCATCGTCGCTGGGTTCGGGTTCGCGTCGGTTCTCGGCGCGGAGACGGGCGCGTTCCACATCCTGAACCACGCGATGTTCAAAGCGCCGCTCTTCCTCGTCGCCGGCATCGTCGCGCACGAAGCCGGTACCAGAACGATCAGCGAACTCGGCGGCCTCAGACGCGACCTCCCCATCACGGCCGCCGTCACGGTCGTCGCCGCGCTCGGGATGGCGGGCGTCCCGCCGTTCAACGGATTCTACTCGAAGGAGTTCCTCTTCGAGACGACGTACGAGTTCGCCGCGCACGCGGGCGGCCTCGCGTGGGTCGTCCCCGCCGTCGCCGTGCTCGGGAGCGTGTTCACGTTCCTCTACTCGGTGCGCTTTCTCATGCTGTTCTTCGGGGAGAAACCGAGCGGCCTCGGGCACGTCCACCGGCCGCCACTGACGATGCTCGCGCCGCCCGTCCTGCTCGCCGCCGTCGCGGGCACCATCGGACTCAACGGCCTGCTCGCGTCCTTCCACGCCGGCTTCGCTCCAATCACCGAGTTCGTCGCCCGCGTCGTGAACAGCACCACCGCCGCCGGGCACGGCGGCCACGAGTTCTCCTACTACGTCCCGACCTACGTCAGCCCCGCGCTCGTCATGAGCGCCGCGACCATCGCGCTCGGCCTCGCGGCCTACCCGGCCTACGGCCGCATCCACGACGCGCTCCACGCGCTCTTCCGAACCGTCCCGCCGATTCAGGCGGACTGGTGGTACGACGCGGCCGTCGGCGGCCTCGACGGCGTCTCACGCGGTACCGCGCGCGTCGTCCAGACCGGCCAACTCCGCACGTACGCGGCCTGGACGCTCACCGCCACCGCGGGCCTCGCGCTCGCCGGATACGCGGCCGTCGGCGCGTCCCTGCCCCCGCTCTCGTACTCGCTGTCGATTCCGCTCCTCCTCGTTCTCGTCACCGCCGTCGTCGCCGCGGCCGCGGTGACCGTCGCGCCCTCGCACACGACGGGCGTGCTCACGCTCTCCATCCTCGGGTTCATGCTCGCCATCTTCTACATCCTCGCGAGCGCGCCCGACCTCGCGCTCACCCAGCTCGTCGTCGAGACGCTCGTGCTCGTCATCTTCCTGCTCGTGCTCGACCGACTCCCCTCCTACTACGGCGAGACCCGGCGCTCCCGGAAGGTTCGGGACGCCGGCCTCTCCGTGCTCGTGGGCGCGACGGTCACGGTGACCGTCCTGCTCGCCACCGCGGGCGGTGACCCGTCCGCGAGCCTGAATCCCGTTTCGGGCATCGACACCAGTCACCTCGTCGAACTCGCGGTGGAGGAGGGCGGCGGGACGAACGTCGTGAACGTCATCCTCGTCGACCTCCGCGCGTTCGACACGCTCGGCGAGATCGGCGTCGTCGCAATCGCCGCGCTCTCCGTGGTGACGCTCATCGCGATGCGGGAACGCGGAGGTGAGGCGGAATGA
Set subsequence
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nr
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yeast
ecoli
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for advanced blasting
Limit by entrez query
or select from:
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Viruses [ORGN]
Archaea [ORGN]
Bacteria [ORGN]
Eukaryota [ORGN]
Viridiplantae [ORGN]
Fungi [ORGN]
Metazoa [ORGN]
Arthropoda [ORGN]
Vertebrata [ORGN]
Mammalia [ORGN]
Rodentia [ORGN]
Primates [ORGN]
-------------------
Aeropyrum pernix [ORGN]
Aquifex aeolicus [ORGN]
Arabidopsis thaliana [ORGN]
Bacillus subtilis [ORGN]
Bos taurus [ORGN]
Caenorhabditis elegans [ORGN]
Danio rerio [ORGN]
Dictyostelium discoideum [ORGN]
Drosophila melanogaster [ORGN]
Escherichia coli [ORGN]
Gallus gallus [ORGN]
Homo sapiens [ORGN]
Human immunodeficiency virus type 1 [ORGN]
Methanococcus jannaschii [ORGN]
Mus musculus [ORGN]
Oryctolagus cuniculus [ORGN]
Oryza sativa [ORGN]
Ovis aries [ORGN]
Plasmodium falciparum [ORGN]
Rattus norvegicus [ORGN]
Saccharomyces cerevisiae [ORGN]
Schizosaccharomyces pombe [ORGN]
Simian immunodeficiency virus [ORGN]
Synechocystis PCC6803 [ORGN]
Takifugu rubripes [ORGN]
Xenopus laevis [ORGN]
Zea mays [ORGN]
Choose filter
Low complexity
Human repeats
Mask for lookup table only
Mask lower case
Expect
Word Size
7
11
15
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NCBI-gi
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Alignments
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Alignment view
Pairwise
query-anchored with identities
query-anchored without identities
flat query-anchored with identities
flat query-anchored without identities
Hit Table
Limit results by entrez query
or select from:
(none)
Viruses [ORGN]
Archaea [ORGN]
Bacteria [ORGN]
Eukaryota [ORGN]
Viridiplantae [ORGN]
Fungi [ORGN]
Metazoa [ORGN]
Arthropoda [ORGN]
Vertebrata [ORGN]
Mammalia [ORGN]
Rodentia [ORGN]
Primates [ORGN]
-------------------
Aeropyrum pernix [ORGN]
Aquifex aeolicus [ORGN]
Arabidopsis thaliana [ORGN]
Bacillus subtilis [ORGN]
Bos taurus [ORGN]
Caenorhabditis elegans [ORGN]
Danio rerio [ORGN]
Dictyostelium discoideum [ORGN]
Drosophila melanogaster [ORGN]
Escherichia coli [ORGN]
Gallus gallus [ORGN]
Homo sapiens [ORGN]
Human immunodeficiency virus type 1 [ORGN]
Methanococcus jannaschii [ORGN]
Mus musculus [ORGN]
Oryctolagus cuniculus [ORGN]
Oryza sativa [ORGN]
Ovis aries [ORGN]
Plasmodium falciparum [ORGN]
Rattus norvegicus [ORGN]
Saccharomyces cerevisiae [ORGN]
Schizosaccharomyces pombe [ORGN]
Simian immunodeficiency virus [ORGN]
Synechocystis PCC6803 [ORGN]
Takifugu rubripes [ORGN]
Xenopus laevis [ORGN]
Zea mays [ORGN]
Expect value range:
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