The
Halobacterium
sp. NRC-1
Genome
Log in
Haloarchaeal Genomes
DasSarma Home
UMB
Search
Gene Table
Genome Map
Transcriptome Map
Transcriptome Query
Transcriptome Plot
Metabolism
Genome Comparator
Sequence Retrieval
Comparative Genomics
Blast Genome
Blast Proteome
Sequence Editor
Publications
Resources
Loading
Loading...
phr2
Gene ID
1335
Gene Name
phr2
Annotation
photolyase/cryptochrome
Location
chromosome:995734←994268
Gene type
Functional gene
GC content
71.03
Hydropathicity
-0.594887525562372
DNA (1467 bp,
Edit
)
>phr2|1335|995734|Rev|994268
atgccggccgcccaaccccccggcatgcaactgttctggcaccgacgggacctccgcaccacggacaaccgcggcctcgc
agcggccgctccgggcgtgacagcggtcgacggcggccacgaccagggccctgtcgcggcggtgttctgcttcgacgacg
aggtgttggctcacgccgccccgccccgggtcgcgttcatgctggacgcgctggccgccctccgggagcgctaccgcgac
ctcggcagcgacctcattgtccgccacggcgaccccgctgcggtgctcccggcggtcgccaacgatctcgacgccacccg
ggtcgtctggaaccacgactactcggggctggccaccgaccgcgacgcgggcgtgcgcgacgccctcgacgcggcgggcg
tcgcacacgcccagttccacgacgccgtccaccaccggccgggcgagatccgcacgaacgcgggcgacccgtactcggtg
tacacgtacttctggcggaagtggcaggaccgcgagaagaacccgccggccccggagccagagcccgcggatctcgcggc
cgacaccgcgctcgcggacaccagcccgctgccgtccgtccaggagctcggcttcgcggagccggaggcggcggtccccg
acgccggaaccgcggcggcgcgatcgctgctcgatgccttccgcgagtccggcgacatctaccgctacgaggaccgccgc
gattacccccacgaggaacccacgtcgcggctctccccgcacctgaagttcggcacgatcgggatccgaacggtctacga
ggccgcacgcgcggcgaaatccgacgccgacaccgacgacgaacgcgagaacgtcgcggcgttcatcggccagctcgcgt
ggcgggagttctacgcacaagtcctgtatttcaaccagaacgtcgtctcggagaacttcaaagcgtacgagcaccccatc
gagtggcgcgacgaccccgcggcgctgcaggcctggaaggacggcgaaaccggctatccgatcgtggacgccggcatgcg
ccagctccgcgcggaagcgtacatgcacaaccgcgtgcggatgatcgtcgccgccttcctcacgaaagacctcctggtgg
actggcgggcgggctacgactggttccgggagaagctcgcggaccacgacaccgccaacgacaacggcggctggcagtgg
gccgcctccacgggcaccgacgcccagccgtacttccgggtgttcaacccgatgacccagggggagcgctacgaccccga
cgccgactacatcaccgagttcgtccccgaactccgggacgtgcccgcggacgcgatccacagctggcacgagctgtcgc
tgtccgagcgccgccgacacgccccggagtatccggaccccatcgtggaccacagccagcgccgcgaggacgcgatcgcg
atgttcgagcgtgcgcgcggcgacgagtga
E.C.#
4.1.99.3
pI
4.71
MW (k)
54.8459
Translation (489 aa,
Edit
)
>phr2|1335|gene
MPAAQPPGMQLFWHRRDLRTTDNRGLAAAAPGVTAVDGGHDQGPVAAVFCFDDEVLAHAAPPRVAFMLDALAALRERYRD
LGSDLIVRHGDPAAVLPAVANDLDATRVVWNHDYSGLATDRDAGVRDALDAAGVAHAQFHDAVHHRPGEIRTNAGDPYSV
YTYFWRKWQDREKNPPAPEPEPADLAADTALADTSPLPSVQELGFAEPEAAVPDAGTAAARSLLDAFRESGDIYRYEDRR
DYPHEEPTSRLSPHLKFGTIGIRTVYEAARAAKSDADTDDERENVAAFIGQLAWREFYAQVLYFNQNVVSENFKAYEHPI
EWRDDPAALQAWKDGETGYPIVDAGMRQLRAEAYMHNRVRMIVAAFLTKDLLVDWRAGYDWFREKLADHDTANDNGGWQW
AASTGTDAQPYFRVFNPMTQGERYDPDADYITEFVPELRDVPADAIHSWHELSLSERRRHAPEYPDPIVDHSQRREDAIA
MFERARGDE
Set Format
Select format
Ace database
BSML
EMBL database
FASTA
GAME XML
GCG
GenBank
Phred
PIR database
Phred
plain text
SwissProt
tab-delimited
TIGR XML
NCBI TinySeq XML
Comment
phr2 is a CPD photolyase that is required for UV damage repair in light and plays a major role in photoreactivation based on analysis of knockout strains. See McCready and Marcello [Biochem Soc Trans 2003 Jun;31(Pt3):694-8](https://www.ncbi.nlm.nih.gov/pubmed/12773185) and Baliga et al. [Genome Res 2004 Jun;14(6):1025-35](https://www.ncbi.nlm.nih.gov/pubmed/15140832). For a review, see DasSarma et al. [Photosynth Res 2001;70(1):3-17](https://www.ncbi.nlm.nih.gov/pubmed/16228359) and Kavakli et al. [Jan;93(1):93-103](https://www.ncbi.nlm.nih.gov/pubmed/28067410).