The
Halobacterium
sp. NRC-1
Genome
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bat
Gene ID
1464
Gene Name
bat
Annotation
bacterio-opsin activator
Location
chromosome:1087519←1085498
Gene type
Functional gene
GC content
68.1
Hydropathicity
-0.310682492581602
DNA (2022 bp,
Edit
)
>bat|1464|1087519|Rev|1085498
atgacgagcgtccagaacaccgagtccgagaccgccgccggcgcgacgacgatcggcgtgttgttcgcgggcagcgaccc
ggagacggggccggctgcctgtgacctcgacgaggacggccggttcgacgtgacccagattcgtgatttcgtagccgcac
gcgatcgcgtcgacgatcccgacatcgactgtgtggtcgccgtccacgaaccggatggcttcgacggcgtggcgttcctg
gaagcagtccgacagacccacgcggagttcccggtcgtggtcgtgccgacagccgtcgacgaggacgttgcgcggcgcgc
cgtcgacgccgacgcgacggggctggtgccggcggtgtccgaggacgcgaccgcggcgatcgccgaccgcatcgagcaga
gcgcgcccgcccactccgaggacaccgagacgcggatgccgatctccgacctgaccgtggagtccgagcgccgcctcaaa
gagcaagccctcgacgaggccccgatcgggatcacgatctcggacgccaccgacccggaagagccgatcatctacatcaa
cgactccttcgaggacatcacggggtattcgcccgacgaggtcgtgggcgcgaaccaccgcttcctccaggggccgaaga
ccaacgaggaccgcgtggcggagttctggaccgcgatcaccgaggaccacgacacccaggtcgtgttgcggaactaccgc
cgcgacgggtcgctgttctggaaccaggtggacatcagcccgatctacgacgaggacggcaccgtctcacactacgtcgg
gttccagatggacgtctccgagcgcatggctgcccaacaggagctgcagggggaacgccagtccctggatcgactgctgg
accgcgtgaacggcctgatgaacgatgtcacgtcggcgttagtgcgggcggccgaccgggaggagatcgaaactcggatc
accgaccgcatcggcaccggcggcgagtacgccggcgcgtggttcgggcggtacgacgcgaccgaggacacgatcacggt
cgcggaggcagcgggggactgtgagggatgcgacggcgacgtcttcgatctcgcgtccgccggcgaggccgtcgcgttgc
ttcaggacgtcgtcgagcagcgcgaagcgctcgtgagcacggacgccgacggcgtctccgggaccgccgacggcgacgcg
tgcgtgctggtgccggtcacgtaccggtcgacgacctacggcgtgctcgccgtgtcgaccgccgaacaccgcatcgacga
ccgcgaacaggtgttgttgcgctcgcttggccgcacgaccggcgcgtcgatcaacgacgcgttgacccggcgcaccatcg
ccacggacaccgtgttgaacatcggcgtcgagctgtccgatacggcgctgttcctggttgagttggcgggggcgacagac
accaccttcgagcaggaggcgacgatcgcggacagccagacgcagggcgtgctcatgctcgtgacaacgccacacgacga
cccccaggcggtcgtcgacaccgcgttgggctacgacgccgtccaggacgccgaggtcatcgtctcgaccgacgacgaga
gcgtggtgcagttcgatctgtcgagttcgccgctggtggacgtgctctccgagtgtgggagccgggtcatccgcatgcac
gccgaccggacgacgctggagctcgacgtccgggtcggaaccgagggggcggcgcggcgggtgttgagcacgttgcggga
caagtacgccgacgtggagctggtcgcgtaccacgaggacgatcccgagcagaccccgcatgggttccgcgaggagttgc
gcaacgacctgactgaccggcagctcaccgccctccagaaggcgtacgtgagcggctacttcgagtggccgcggcgcgcg
gagggcaagcagctcgcggagtcgatggatatcgtgccgtcgacgtaccaccagcatctgcaggctgccaagcagaagct
cgtcggcgcgttcttcgaggagtga
pI
4.03
MW (k)
73.39573
Translation (674 aa,
Edit
)
>bat|1464|gene
MTSVQNTESETAAGATTIGVLFAGSDPETGPAACDLDEDGRFDVTQIRDFVAARDRVDDPDIDCVVAVHEPDGFDGVAFL
EAVRQTHAEFPVVVVPTAVDEDVARRAVDADATGLVPAVSEDATAAIADRIEQSAPAHSEDTETRMPISDLTVESERRLK
EQALDEAPIGITISDATDPEEPIIYINDSFEDITGYSPDEVVGANHRFLQGPKTNEDRVAEFWTAITEDHDTQVVLRNYR
RDGSLFWNQVDISPIYDEDGTVSHYVGFQMDVSERMAAQQELQGERQSLDRLLDRVNGLMNDVTSALVRAADREEIETRI
TDRIGTGGEYAGAWFGRYDATEDTITVAEAAGDCEGCDGDVFDLASAGEAVALLQDVVEQREALVSTDADGVSGTADGDA
CVLVPVTYRSTTYGVLAVSTAEHRIDDREQVLLRSLGRTTGASINDALTRRTIATDTVLNIGVELSDTALFLVELAGATD
TTFEQEATIADSQTQGVLMLVTTPHDDPQAVVDTALGYDAVQDAEVIVSTDDESVVQFDLSSSPLVDVLSECGSRVIRMH
ADRTTLELDVRVGTEGAARRVLSTLRDKYADVELVAYHEDDPEQTPHGFREELRNDLTDRQLTALQKAYVSGYFEWPRRA
EGKQLAESMDIVPSTYHQHLQAAKQKLVGAFFEE
Set Format
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tab-delimited
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Comment
The bat (vng1464) gene codes for the bacterio-opsin sensor-activator, a multi-domain protein with a putative redox-sensing PAS-PAC or LOV (COG2202) domain, a light-sensing GAF domain (COG2203), as well as a C-terminal helix-turn-helix (HTH) DNA binding domain (COG3413). It is not essential for the organism’s survival under optimal conditions, however, if the gene is deleted, the cultures appear phenotypically more pink than purple-tinged in color. See DasSarma et al. J Bacteriol. 2012 Oct;194(20):5530-7.