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Halobacterium
sp. NRC-1
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polD2
Gene ID
2338
Gene Name
polD2
Annotation
DNA polymerase type II large chain
Location
chromosome:1750278←1746169
Gene type
Functional gene
GC content
68.49
Hydropathicity
-0.501970802919708
DNA (4110 bp,
Edit
)
>polD2|2338|1750278|Rev|1746169
atgcggcccaccgacgaaacctacttcgaaacgctggaaaccggcctcgacgacgccttcgaggtcgcggaagccgcccg
ggaacgcggggaagacccgacgccgaacgtcgaaatcccggtcgcaaaggacatggccgaccgcgtcgagaacatcctcg
ggatcgacggcgtcgccgagcgcgtccgcgatctcgacggcgagatgagccgcgaggaggccgcgctggagctcgtcgcg
gacttcgtcgacggccgcgtcggcgactacgacaccgacgccggcaagatcgagggcgcggtccgcaccgcggttgcact
gctcactgagggcgtggtcgcggcccccatcgagggcatcgaccgcgttgaagtcaacgacaacgacgacggcacccagt
acgtcgcggtctactacgccggccccatccggtcggccggcggcaccgcgcaggcgctctcggtgctcgtcgccgactac
gcgcgtgcgatgctcggcatcgacgcgttcaaaccccgcgacgacgagatcgagcgctacgccgaggaggtcgatctcta
cgactccgagaccggtctccagtactccccgaaggacgccgaaaccacgttcatcaccgaacactgtccggtgatgctgg
acggcgaagcaaccggcaacgaggaggtcgatgggttccgcgacctcgaacgcatcgacaccaactccccgcggggcggc
atgtgtctcgtgctcgcggagggcatcgcgctgaaagcccccaagatccagcgctacacccggaacctcgacgaagtcgc
gtggccgtggctccaggacctcatcgacggcaccatcggcgccgacgacgccgacgaagacaccccggacgccggcagcg
acagcgacgcaaccgacgagggggacgcccccagtgcgagcaccgacgccgaggagccaccccgcgccgccccctcggac
aagttcctccgcgacctcatcgcgggccggccggtgttcggccatccctccaaaaacggcgggttcaggctgcgctacgg
gcgtgcgcgaaaccacgggaacgcgaccgcgggcgtccacccggcgacgatgcacttgctcgatgacttcctcgcgacgg
gcacccagatcaagaccgaacgccccgggaaggccgcgggcatcgtccccgtcgactccatcgaggggccgacggtgaaa
ctcgccaacggcgacgtccgccacatcaacgaccccgcggacgccctcgacgtccgcaacggcgtcgcggagatcctcga
cgtcggcgaatacctcgtgaactacggggagttcgtggagaacaaccacgagctcgcgcccgcctcgtacgcccccgagt
ggtggattcaggacctcgacgccgcgggcgcggacgtgcaagccctccgggactcgccgtacgtcgatctcaccgccccc
accgccgatcaagccatggcgtgggcgaccgactacgacgccccgctgcacccggcgtacacgtacctctggcacgacat
cgacgtcgagcagttccgcgcgctcgccgacgccgtcgccgacgcccacaccgacgccagcgacgacgacgaccgcggtg
tgctcgtgctcgatcacaccaccaccgtgcgcgagacgctcgaagcgctcctggtcacccaccaccagggcgacgacacc
atccgggtcgacgactggctgccgctggcgcgctcgctcggcgtcaccgaatcgctcgaccgggagtgggagacgctctc
tgaggccgccgccgagtggcccaacgccgtccgcgcggtcaacgaagtcgcgccgttcagcgtccaggagcgcgccccca
cacgcatcgggaaccgcatgggccgccccgagaaatccgaatcccgcgatctctcgccggccgtccacaccctgttcccc
atcggcgacgccggcggcagccagcgcgacgtcgccgacgccgcgcggtacgcgccggacatgtccgacacgcccggcga
aatccccgtccgggtcggcgaccgcgtctgtccgtcctgcgacgagcacacctacgaatcgcggtgccccgactgcgggg
actggaccgacccccactacgagtgccgggactgcggtgccgtcgccacccccgacgagtccgggcgcgtcgaatgcccg
aactgcgggcgggacctcgacaacgtcaccacacaggtcatcgacatcaacgacgaataccacggcgcgctccgcgccgt
cggcgagcgcgagaacgccttcgaccaactcaaaggcgtcaagggactgttatccgcggagaaaacccccgaacccatgg
cgaaaggcgtcctgcgcgcgaaacacgacgtcaccgcgttcaaggacggcactgtccgctacgacatgaccgacctcccg
gtgaccgccgtcacacccgcggagctcgacgtcactgccgggcagttccgcgaactcggctacaaccaggacatccacgg
cgaccccctcgaacacgacgaccaactggtcgaactccgcgtgcaggacgtggtgctctccgacggcgcggccgaccaca
tgctcaagaccgcggacttcgtcgacgacctcctcacccagtattacggcctcgacgccttctacgacctcgacgaccgc
gacgatctcgtcggcgaactcgtcttcggcatggcaccccacacgtcggccgccgtcgtcggccgcgttgccggcttcac
ctccgcgtccgtcggctacgcccacccctacttccacgccgcgaaacgccggaactgcttccacccggagacgaacgtct
ggttccgcgacgagtccggggagtggcaccacgacccgatcgagacgctcgtcgaggcgcgactcgatcccgacacggcc
gacgaggacgacttcggagccctcgtgcaggccctcgacggcgacgtgttcgtgccctcggtgaccgaggacggcgagga
gaccctccagcgagtcgaagccgtctccaaacaccccgccccggaccacctcctcgcggtcgagacgaaacgcggccggg
aactgaccgtgacccccgaccactcgatgcgtcggtggaccggggacggcatcgaacgcgtcgacgcccgggaactgacg
gcgggcgacgctctccccgcaccgacacaggttccgggcgacggcgagacggcgacgtccgagctgcgttccgagtccct
ggacggcacacacccgcagcgacgcttcggtgacggcggcagcgtccggaccgacgaggtcgtgtccgtcgaaccggtcc
gatccagcgtcgaccacacgtactccctgaccgtcgcggagaccaacacgctcgtcgcaaacggcctgttcaccgggcag
tgcgacggcgacgaggactgcgtgatgctgctgatggacggcctgatcaacttctcgaagtcgtacctgccggacaagcg
cggcggccggatggacgcgccgctggtgatgtcctcccgcatcgaccccgcggagatcgacgacgaagcccacaacatcg
acatcgaccgcgagtacccccgggagttctacgaggcgacccgggagctggccgaccccgaggacgtggcggacctcatc
accctcgcggagtcgacggtcggcaccgacgaagagtacaccggcttcgggcacacccacgccacctccaacatccacct
ggggccgtcgctgtcggcgtacaagaccctggggtcgatgatggacaagatggacgcccaactggagttggcccgcaaac
tccggtcggtcgccgaaaccgacgtcgccgaacgcgtcatcgagtaccacttcctcccggacctcatcgggaacctgcgc
gcgttcagccgccaggaaacccggtgtctggactgtggggagaaataccgccgcatgccgctcagcggcgactgccggga
gtgcggtgggcgcgtgaacctcacggtccacgagggttccgtaaacaagtacatggacaccgccatgcgggtcgccaccg
agtacgactgccgggagtacacgaaacagcgcctcgaaatcatggaccgacgcctggaatccgtcttcgaggacgacacc
aacaagcaaagcggcatctccgatttcatgtga
E.C.#
2.7.7.7
pI
4.22
MW (k)
150.29475
Translation (1370 aa,
Edit
)
>polD2|2338|gene
MRPTDETYFETLETGLDDAFEVAEAARERGEDPTPNVEIPVAKDMADRVENILGIDGVAERVRDLDGEMSREEAALELVA
DFVDGRVGDYDTDAGKIEGAVRTAVALLTEGVVAAPIEGIDRVEVNDNDDGTQYVAVYYAGPIRSAGGTAQALSVLVADY
ARAMLGIDAFKPRDDEIERYAEEVDLYDSETGLQYSPKDAETTFITEHCPVMLDGEATGNEEVDGFRDLERIDTNSPRGG
MCLVLAEGIALKAPKIQRYTRNLDEVAWPWLQDLIDGTIGADDADEDTPDAGSDSDATDEGDAPSASTDAEEPPRAAPSD
KFLRDLIAGRPVFGHPSKNGGFRLRYGRARNHGNATAGVHPATMHLLDDFLATGTQIKTERPGKAAGIVPVDSIEGPTVK
LANGDVRHINDPADALDVRNGVAEILDVGEYLVNYGEFVENNHELAPASYAPEWWIQDLDAAGADVQALRDSPYVDLTAP
TADQAMAWATDYDAPLHPAYTYLWHDIDVEQFRALADAVADAHTDASDDDDRGVLVLDHTTTVRETLEALLVTHHQGDDT
IRVDDWLPLARSLGVTESLDREWETLSEAAAEWPNAVRAVNEVAPFSVQERAPTRIGNRMGRPEKSESRDLSPAVHTLFP
IGDAGGSQRDVADAARYAPDMSDTPGEIPVRVGDRVCPSCDEHTYESRCPDCGDWTDPHYECRDCGAVATPDESGRVECP
NCGRDLDNVTTQVIDINDEYHGALRAVGERENAFDQLKGVKGLLSAEKTPEPMAKGVLRAKHDVTAFKDGTVRYDMTDLP
VTAVTPAELDVTAGQFRELGYNQDIHGDPLEHDDQLVELRVQDVVLSDGAADHMLKTADFVDDLLTQYYGLDAFYDLDDR
DDLVGELVFGMAPHTSAAVVGRVAGFTSASVGYAHPYFHAAKRRNCFHPETNVWFRDESGEWHHDPIETLVEARLDPDTA
DEDDFGALVQALDGDVFVPSVTEDGEETLQRVEAVSKHPAPDHLLAVETKRGRELTVTPDHSMRRWTGDGIERVDARELT
AGDALPAPTQVPGDGETATSELRSESLDGTHPQRRFGDGGSVRTDEVVSVEPVRSSVDHTYSLTVAETNTLVANGLFTGQ
CDGDEDCVMLLMDGLINFSKSYLPDKRGGRMDAPLVMSSRIDPAEIDDEAHNIDIDREYPREFYEATRELADPEDVADLI
TLAESTVGTDEEYTGFGHTHATSNIHLGPSLSAYKTLGSMMDKMDAQLELARKLRSVAETDVAERVIEYHFLPDLIGNLR
AFSRQETRCLDCGEKYRRMPLSGDCRECGGRVNLTVHEGSVNKYMDTAMRVATEYDCREYTKQRLEIMDRRLESVFEDDT
NKQSGISDFM
Set Format
Select format
Ace database
BSML
EMBL database
FASTA
GAME XML
GCG
GenBank
Phred
PIR database
Phred
plain text
SwissProt
tab-delimited
TIGR XML
NCBI TinySeq XML
Comment
polD2 encodes the large subunit of the heterodimeric euryarchaeal specific D family DNA polymerase on the large chromosome. This polymerase is thought to act at the lagging strand and the polD2 gene has been determined to be essential.See Berquist et al. [BMC Genet. 2007 Jun 8;8:31](https://www.ncbi.nlm.nih.gov/pubmed/17559652).