The
Halobacterium
sp. NRC-1
Genome
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bop
Gene ID
1467
Gene Name
bop
Annotation
bacteriorhodopsin
Location
chromosome:1089122→1089907
Gene type
Functional gene
GC content
61.71
Hydropathicity
0.722519083969466
DNA (786 bp,
Edit
)
>bop|1467|1089122|For|1089907
atgttggagttattgccaacagcagtggagggggtatcgcaggcccagatcaccggacgtccggagtggatctggctagc
gctcggtacggcgctaatgggactcgggacgctctatttcctcgtgaaagggatgggcgtctcggacccagatgcaaaga
aattctacgccatcacgacgctcgtcccagccatcgcgttcacgatgtacctctcgatgctgctggggtatggcctcaca
atggtaccgttcggtggggagcagaaccccatctactgggcgcggtacgctgactggctgttcaccacgccgctgttgtt
gttagacctcgcgttgctcgttgacgcggatcagggaacgatccttgcgctcgtcggtgccgacggcatcatgatcggga
ccggcctggtcggcgcactgacgaaggtctactcgtaccgcttcgtgtggtgggcgatcagcaccgcagcgatgctgtac
atcctgtacgtgctgttcttcgggttcacctcgaaggccgaaagcatgcgccccgaggtcgcatccacgttcaaagtact
gcgtaacgttaccgttgtgttgtggtccgcgtatcccgtcgtgtggctgatcggcagcgaaggtgcgggaatcgtgccgc
tgaacatcgagacgctgctgttcatggtgcttgacgtgagcgcgaaggtcggcttcgggctcatcctcctgcgcagtcgt
gcgatcttcggcgaagccgaagcgccggagccgtccgccggcgacggcgcggccgcgaccagcgactga
pI
4.41
MW (k)
28.25595
Translation (262 aa,
Edit
)
>bop|1467|gene
MLELLPTAVEGVSQAQITGRPEWIWLALGTALMGLGTLYFLVKGMGVSDPDAKKFYAITTLVPAIAFTMYLSMLLGYGLT
MVPFGGEQNPIYWARYADWLFTTPLLLLDLALLVDADQGTILALVGADGIMIGTGLVGALTKVYSYRFVWWAISTAAMLY
ILYVLFFGFTSKAESMRPEVASTFKVLRNVTVVLWSAYPVVWLIGSEGAGIVPLNIETLLFMVLDVSAKVGFGLILLRSR
AIFGEAEAPEPSAGDGAAATSD
Set Format
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Comment
The bop gene was the first Halobacterium gene to be cloned and sequenced. See Chang et al. [Proc Natl Acad Sci U S A. 1981 Jun;78(6):3398-402](https://www.ncbi.nlm.nih.gov/pubmed/6943548) and Dunn et al. [Proc Natl Acad Sci U S A. 1981 Nov;78(11):6744-8](https://www.ncbi.nlm.nih.gov/pubmed/12049093). Inactivating insertion elements and transcription start were subsequently characterized and resulted in the discovery of novel transcriptional signals in Archaea. See DasSarma et al. [Proc Natl Acad Sci U S A. 1983 Apr;80(8):2201-5](https://www.ncbi.nlm.nih.gov/pubmed/6300900), [Proc Natl Acad Sci U S A. 1984 Jan;81(1):125-9](https://www.ncbi.nlm.nih.gov/pubmed/16593404), Yang et al. [J Bacteriol. 1996 Feb;178(3):840-5](https://www.ncbi.nlm.nih.gov/pubmed/8550521), Baliga et al. [Proc Natl Acad Sci U S A. 2001 Feb;98(5):2521-5](https://www.ncbi.nlm.nih.gov/pubmed/11226271), Baliga and DasSarma [J Bacteriol. 1999 Apr;181(8):2513-8](https://www.ncbi.nlm.nih.gov/pubmed/10198017), and [Mol Microbiol. 2000; Jun 36(5):1175-83](https://www.ncbi.nlm.nih.gov/pubmed/10844701), and DasSarma et al. [J Bacteriol. 2012 Oct;194(20):5530-7] (https://www.ncbi.nlm.nih.gov/pubmed/22865851).
