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Halobacterium
sp. NRC-1
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cbaA
Gene ID
2193
Gene Name
cbaA
Annotation
ba3-type cytochrome oxidase subunit I
Location
chromosome:1626546←1624852
Gene type
Functional gene
GC content
66.962
Hydropathicity
0.701592920353984
DNA (1695 bp,
Edit
)
>cbaA|2193|1626546|Rev|1624852
gtgacgttcatcgacaagttcccgaccgaagcgaagctcgtcagatggcatttcggcgttgggttcgtcgcgctcgccat
cggcggcctgttcggcctcgtgcaagcgctctaccgcaccgggcacctccggtcgctgctcccgatcaacgccgcccagt
actacacggtgttgaccggccacggcgtgctgctggcgctcgtgttcaccacgttcctgatctgtgggttcttcgtgtgg
gcggtcacacgcagcctcgaccgcccgctttcgcacccacggctcgtctggacggggttcatctcgatggtcgtcggcac
cacgctggccgccatcaccatcctcaacgggttcgcgccggagctgccctttggctccgcgaacgtgctgtacacgttct
acccgccgctgcaagcccaccccgccttctacgtcggggcggcgctgctcatcgtcggctcctggatcgtcggcgccgac
tacttcctgacgtatcgcgcgtggcgcgcggacaaccccgacgagcgcatcccactccagacgttcatggtgctcgcgac
gttcgtcatgtggtatctctcctcggccggcgtggccgtcgaagtcgtcgcgttcctgatcccgtggtcgatggggtgga
tcagccaggtcgacccgctgttgacccgcacgctgttctggtacttcggccaccccgtcgtctacttctggctgctgccc
gcctacctggcgtggtacaccatcctcccgaagctcgccggcggcaaactgttcagtgatccgctggcacgcgtcgtctt
cgtgctgttcgtgttgctgtcgacgccggtcggcttccaccaccagtacaccgaccccgggatcgctgaagggttcaaat
tcatcgcgatgacgaacaccttcatgctgctgttaccgtcgctgctgaccgcgttcacggtcgtggcgtccctggaacac
ggcgcccgccagcgcggcggcagcggctacatcggctggctgcgcgcgctcccctggggcaagccgtcgttctcggcgat
ggcgctcgccgggctcgtgttcgccgccggcgggttctccggcatgatcaacgccggcatgaacatcaactacctcatcc
acaacaccatctgggtgcccggccacttccacctcaccgtcggcaccgcgttcgccctgaccatgatgggcgtcgcgtac
tggctggtcccccagatcaccggcaaacgcctccaacaccggacgctagcggccatccagccgttcgtctgggtgatcgg
catgacgctgatgtcgaacgccatgcaccgcggcggcctcgccgggctgccacggcgcaccgccaagccgctgttccgcg
gtgagggggcggcccccttcgatccggtggtcggcaccatcagcgagatgcaactccagatcgcgatcggcggcacgctg
ctgttcgtctcgctggcgctgttcctggccgtgatggtggggacgtggctgtcacgacccggcatggggcggctctcggt
caacggctcgatcccgtcggcgttatccggccccgccgacagcccccgcatcctcgacaacctcaaggtttggacggcca
tcgcggtcgtcctcgtgatcatcgcgtacggactcccgctgtacggcatgctcgccgacggcgttctcgcccccggcagc
cccggcttcccggtgtaa
E.C.#
1.9.3.1
pI
10.62
MW (k)
61.45915
Translation (565 aa,
Edit
)
>cbaA|2193|gene
VTFIDKFPTEAKLVRWHFGVGFVALAIGGLFGLVQALYRTGHLRSLLPINAAQYYTVLTGHGVLLALVFTTFLICGFFVW
AVTRSLDRPLSHPRLVWTGFISMVVGTTLAAITILNGFAPELPFGSANVLYTFYPPLQAHPAFYVGAALLIVGSWIVGAD
YFLTYRAWRADNPDERIPLQTFMVLATFVMWYLSSAGVAVEVVAFLIPWSMGWISQVDPLLTRTLFWYFGHPVVYFWLLP
AYLAWYTILPKLAGGKLFSDPLARVVFVLFVLLSTPVGFHHQYTDPGIAEGFKFIAMTNTFMLLLPSLLTAFTVVASLEH
GARQRGGSGYIGWLRALPWGKPSFSAMALAGLVFAAGGFSGMINAGMNINYLIHNTIWVPGHFHLTVGTAFALTMMGVAY
WLVPQITGKRLQHRTLAAIQPFVWVIGMTLMSNAMHRGGLAGLPRRTAKPLFRGEGAAPFDPVVGTISEMQLQIAIGGTL
LFVSLALFLAVMVGTWLSRPGMGRLSVNGSIPSALSGPADSPRILDNLKVWTAIAVVLVIIAYGLPLYGMLADGVLAPGS
PGFPV
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Comment
The cbaA gene codes for a subunit of an alternate cytochrome oxidase which likely functions at low oxygen concentration. See DasSarma et al. [J Bacteriol. 2012 Oct;194(20) 5530-7](https://www.ncbi.nlm.nih.gov/pubmed/22865851).
