The Halobacterium sp. NRC-1 Genome

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cbaD

Gene ID2196
Gene NamecbaD
Annotationba3-type cytochrome oxidase subunit IVa
Locationchromosome:1627957←1627094
Gene typeFunctional gene
GC content68.98
Hydropathicity-0.00624999999999997
DNA (864 bp, Edit)>cbaD|2196|1627957|Rev|1627094
atgaccagactagatgacacagcgctctcacgccgcggcgtcctgcgcgccgctgccggcactgcgacggcggtcgcggc
cggcacggcggcgaccggggcggccgcggctcaagcgtacgatggatggttctccggcgacgccaagggcggcgccgtcg
gcaactacgacggaacgactgttgaccggaccggcactgacgaggtcacgatcgacgttggggtggacgccaacggcggc
acgtacgggttcgggccggcagccgtgcgggtcgacccgggcacgacggtgtccttcgagtgggtgtcgaacacgcacaa
catcctgatcgacgcccagcccgacggcgccgactggggcggccacgaccccatcgagaacacggggttcacgcacaccc
acacgttcgacaccgagggtgtgtacacgtactactgtaacccccatctcacgatggggatgaaaggcgccatcgtcgtc
ggcgcgcccccgagtggcaccactagcggtggtggcggcggggcggccggcagcagcgtctctccggccagcaccctctg
gaccgccgtgttcgccggcgcggtcggggttgcgatgctggtcccggttgcggtgagctactaccggcgcacgcccgccc
cggactcgtcgggggcgttcgactacgagccgggcggcgacacggacgaccaacctgcgatcccggaggccgacgccttc
gaacccgacaccgaactcgggcacgacgagtacgacccggttggaacgctctccatcgttgcggtctacttcctcattct
cgtggggatgtgggcgttcacgtacttcatcgagttcctcgggaacggaccgacgatcatggggtga
pI3.97
MW (k)29.42706
Translation (288 aa, Edit)>cbaD|2196|gene
MTRLDDTALSRRGVLRAAAGTATAVAAGTAATGAAAAQAYDGWFSGDAKGGAVGNYDGTTVDRTGTDEVTIDVGVDANGG
TYGFGPAAVRVDPGTTVSFEWVSNTHNILIDAQPDGADWGGHDPIENTGFTHTHTFDTEGVYTYYCNPHLTMGMKGAIVV
GAPPSGTTSGGGGGAAGSSVSPASTLWTAVFAGAVGVAMLVPVAVSYYRRTPAPDSSGAFDYEPGGDTDDQPAIPEADAF
EPDTELGHDEYDPVGTLSIVAVYFLILVGMWAFTYFIEFLGNGPTIMG
The cbaD gene codes for a small hydrophobic protein that is part of an alternate cytochrome oxidase which likely functions at low oxygen concentration. See DasSarma et al. [J Bacteriol. 2012 Oct;194(20) 5530-7](https://www.ncbi.nlm.nih.gov/pubmed/22865851).