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Halobacterium
sp. NRC-1
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cbaD
Gene ID
2196
Gene Name
cbaD
Annotation
ba3-type cytochrome oxidase subunit IVa
Location
chromosome:1627957←1627094
Gene type
Functional gene
GC content
68.98
Hydropathicity
-0.00624999999999997
DNA (864 bp,
Edit
)
>cbaD|2196|1627957|Rev|1627094
atgaccagactagatgacacagcgctctcacgccgcggcgtcctgcgcgccgctgccggcactgcgacggcggtcgcggc
cggcacggcggcgaccggggcggccgcggctcaagcgtacgatggatggttctccggcgacgccaagggcggcgccgtcg
gcaactacgacggaacgactgttgaccggaccggcactgacgaggtcacgatcgacgttggggtggacgccaacggcggc
acgtacgggttcgggccggcagccgtgcgggtcgacccgggcacgacggtgtccttcgagtgggtgtcgaacacgcacaa
catcctgatcgacgcccagcccgacggcgccgactggggcggccacgaccccatcgagaacacggggttcacgcacaccc
acacgttcgacaccgagggtgtgtacacgtactactgtaacccccatctcacgatggggatgaaaggcgccatcgtcgtc
ggcgcgcccccgagtggcaccactagcggtggtggcggcggggcggccggcagcagcgtctctccggccagcaccctctg
gaccgccgtgttcgccggcgcggtcggggttgcgatgctggtcccggttgcggtgagctactaccggcgcacgcccgccc
cggactcgtcgggggcgttcgactacgagccgggcggcgacacggacgaccaacctgcgatcccggaggccgacgccttc
gaacccgacaccgaactcgggcacgacgagtacgacccggttggaacgctctccatcgttgcggtctacttcctcattct
cgtggggatgtgggcgttcacgtacttcatcgagttcctcgggaacggaccgacgatcatggggtga
pI
3.97
MW (k)
29.42706
Translation (288 aa,
Edit
)
>cbaD|2196|gene
MTRLDDTALSRRGVLRAAAGTATAVAAGTAATGAAAAQAYDGWFSGDAKGGAVGNYDGTTVDRTGTDEVTIDVGVDANGG
TYGFGPAAVRVDPGTTVSFEWVSNTHNILIDAQPDGADWGGHDPIENTGFTHTHTFDTEGVYTYYCNPHLTMGMKGAIVV
GAPPSGTTSGGGGGAAGSSVSPASTLWTAVFAGAVGVAMLVPVAVSYYRRTPAPDSSGAFDYEPGGDTDDQPAIPEADAF
EPDTELGHDEYDPVGTLSIVAVYFLILVGMWAFTYFIEFLGNGPTIMG
Set Format
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tab-delimited
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Comment
The cbaD gene codes for a small hydrophobic protein that is part of an alternate cytochrome oxidase which likely functions at low oxygen concentration. See DasSarma et al. [J Bacteriol. 2012 Oct;194(20) 5530-7](https://www.ncbi.nlm.nih.gov/pubmed/22865851).