The Halobacterium sp. NRC-1 Genome

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polD2

Gene ID2338
Gene NamepolD2
AnnotationDNA polymerase type II large chain
Locationchromosome:1750278←1746169
Gene typeFunctional gene
GC content68.49
Hydropathicity-0.501970802919708
DNA (4110 bp, Edit)>polD2|2338|1750278|Rev|1746169
atgcggcccaccgacgaaacctacttcgaaacgctggaaaccggcctcgacgacgccttcgaggtcgcggaagccgcccg
ggaacgcggggaagacccgacgccgaacgtcgaaatcccggtcgcaaaggacatggccgaccgcgtcgagaacatcctcg
ggatcgacggcgtcgccgagcgcgtccgcgatctcgacggcgagatgagccgcgaggaggccgcgctggagctcgtcgcg
gacttcgtcgacggccgcgtcggcgactacgacaccgacgccggcaagatcgagggcgcggtccgcaccgcggttgcact
gctcactgagggcgtggtcgcggcccccatcgagggcatcgaccgcgttgaagtcaacgacaacgacgacggcacccagt
acgtcgcggtctactacgccggccccatccggtcggccggcggcaccgcgcaggcgctctcggtgctcgtcgccgactac
gcgcgtgcgatgctcggcatcgacgcgttcaaaccccgcgacgacgagatcgagcgctacgccgaggaggtcgatctcta
cgactccgagaccggtctccagtactccccgaaggacgccgaaaccacgttcatcaccgaacactgtccggtgatgctgg
acggcgaagcaaccggcaacgaggaggtcgatgggttccgcgacctcgaacgcatcgacaccaactccccgcggggcggc
atgtgtctcgtgctcgcggagggcatcgcgctgaaagcccccaagatccagcgctacacccggaacctcgacgaagtcgc
gtggccgtggctccaggacctcatcgacggcaccatcggcgccgacgacgccgacgaagacaccccggacgccggcagcg
acagcgacgcaaccgacgagggggacgcccccagtgcgagcaccgacgccgaggagccaccccgcgccgccccctcggac
aagttcctccgcgacctcatcgcgggccggccggtgttcggccatccctccaaaaacggcgggttcaggctgcgctacgg
gcgtgcgcgaaaccacgggaacgcgaccgcgggcgtccacccggcgacgatgcacttgctcgatgacttcctcgcgacgg
gcacccagatcaagaccgaacgccccgggaaggccgcgggcatcgtccccgtcgactccatcgaggggccgacggtgaaa
ctcgccaacggcgacgtccgccacatcaacgaccccgcggacgccctcgacgtccgcaacggcgtcgcggagatcctcga
cgtcggcgaatacctcgtgaactacggggagttcgtggagaacaaccacgagctcgcgcccgcctcgtacgcccccgagt
ggtggattcaggacctcgacgccgcgggcgcggacgtgcaagccctccgggactcgccgtacgtcgatctcaccgccccc
accgccgatcaagccatggcgtgggcgaccgactacgacgccccgctgcacccggcgtacacgtacctctggcacgacat
cgacgtcgagcagttccgcgcgctcgccgacgccgtcgccgacgcccacaccgacgccagcgacgacgacgaccgcggtg
tgctcgtgctcgatcacaccaccaccgtgcgcgagacgctcgaagcgctcctggtcacccaccaccagggcgacgacacc
atccgggtcgacgactggctgccgctggcgcgctcgctcggcgtcaccgaatcgctcgaccgggagtgggagacgctctc
tgaggccgccgccgagtggcccaacgccgtccgcgcggtcaacgaagtcgcgccgttcagcgtccaggagcgcgccccca
cacgcatcgggaaccgcatgggccgccccgagaaatccgaatcccgcgatctctcgccggccgtccacaccctgttcccc
atcggcgacgccggcggcagccagcgcgacgtcgccgacgccgcgcggtacgcgccggacatgtccgacacgcccggcga
aatccccgtccgggtcggcgaccgcgtctgtccgtcctgcgacgagcacacctacgaatcgcggtgccccgactgcgggg
actggaccgacccccactacgagtgccgggactgcggtgccgtcgccacccccgacgagtccgggcgcgtcgaatgcccg
aactgcgggcgggacctcgacaacgtcaccacacaggtcatcgacatcaacgacgaataccacggcgcgctccgcgccgt
cggcgagcgcgagaacgccttcgaccaactcaaaggcgtcaagggactgttatccgcggagaaaacccccgaacccatgg
cgaaaggcgtcctgcgcgcgaaacacgacgtcaccgcgttcaaggacggcactgtccgctacgacatgaccgacctcccg
gtgaccgccgtcacacccgcggagctcgacgtcactgccgggcagttccgcgaactcggctacaaccaggacatccacgg
cgaccccctcgaacacgacgaccaactggtcgaactccgcgtgcaggacgtggtgctctccgacggcgcggccgaccaca
tgctcaagaccgcggacttcgtcgacgacctcctcacccagtattacggcctcgacgccttctacgacctcgacgaccgc
gacgatctcgtcggcgaactcgtcttcggcatggcaccccacacgtcggccgccgtcgtcggccgcgttgccggcttcac
ctccgcgtccgtcggctacgcccacccctacttccacgccgcgaaacgccggaactgcttccacccggagacgaacgtct
ggttccgcgacgagtccggggagtggcaccacgacccgatcgagacgctcgtcgaggcgcgactcgatcccgacacggcc
gacgaggacgacttcggagccctcgtgcaggccctcgacggcgacgtgttcgtgccctcggtgaccgaggacggcgagga
gaccctccagcgagtcgaagccgtctccaaacaccccgccccggaccacctcctcgcggtcgagacgaaacgcggccggg
aactgaccgtgacccccgaccactcgatgcgtcggtggaccggggacggcatcgaacgcgtcgacgcccgggaactgacg
gcgggcgacgctctccccgcaccgacacaggttccgggcgacggcgagacggcgacgtccgagctgcgttccgagtccct
ggacggcacacacccgcagcgacgcttcggtgacggcggcagcgtccggaccgacgaggtcgtgtccgtcgaaccggtcc
gatccagcgtcgaccacacgtactccctgaccgtcgcggagaccaacacgctcgtcgcaaacggcctgttcaccgggcag
tgcgacggcgacgaggactgcgtgatgctgctgatggacggcctgatcaacttctcgaagtcgtacctgccggacaagcg
cggcggccggatggacgcgccgctggtgatgtcctcccgcatcgaccccgcggagatcgacgacgaagcccacaacatcg
acatcgaccgcgagtacccccgggagttctacgaggcgacccgggagctggccgaccccgaggacgtggcggacctcatc
accctcgcggagtcgacggtcggcaccgacgaagagtacaccggcttcgggcacacccacgccacctccaacatccacct
ggggccgtcgctgtcggcgtacaagaccctggggtcgatgatggacaagatggacgcccaactggagttggcccgcaaac
tccggtcggtcgccgaaaccgacgtcgccgaacgcgtcatcgagtaccacttcctcccggacctcatcgggaacctgcgc
gcgttcagccgccaggaaacccggtgtctggactgtggggagaaataccgccgcatgccgctcagcggcgactgccggga
gtgcggtgggcgcgtgaacctcacggtccacgagggttccgtaaacaagtacatggacaccgccatgcgggtcgccaccg
agtacgactgccgggagtacacgaaacagcgcctcgaaatcatggaccgacgcctggaatccgtcttcgaggacgacacc
aacaagcaaagcggcatctccgatttcatgtga
E.C.#2.7.7.7
pI4.22
MW (k)150.29475
Translation (1370 aa, Edit)>polD2|2338|gene
MRPTDETYFETLETGLDDAFEVAEAARERGEDPTPNVEIPVAKDMADRVENILGIDGVAERVRDLDGEMSREEAALELVA
DFVDGRVGDYDTDAGKIEGAVRTAVALLTEGVVAAPIEGIDRVEVNDNDDGTQYVAVYYAGPIRSAGGTAQALSVLVADY
ARAMLGIDAFKPRDDEIERYAEEVDLYDSETGLQYSPKDAETTFITEHCPVMLDGEATGNEEVDGFRDLERIDTNSPRGG
MCLVLAEGIALKAPKIQRYTRNLDEVAWPWLQDLIDGTIGADDADEDTPDAGSDSDATDEGDAPSASTDAEEPPRAAPSD
KFLRDLIAGRPVFGHPSKNGGFRLRYGRARNHGNATAGVHPATMHLLDDFLATGTQIKTERPGKAAGIVPVDSIEGPTVK
LANGDVRHINDPADALDVRNGVAEILDVGEYLVNYGEFVENNHELAPASYAPEWWIQDLDAAGADVQALRDSPYVDLTAP
TADQAMAWATDYDAPLHPAYTYLWHDIDVEQFRALADAVADAHTDASDDDDRGVLVLDHTTTVRETLEALLVTHHQGDDT
IRVDDWLPLARSLGVTESLDREWETLSEAAAEWPNAVRAVNEVAPFSVQERAPTRIGNRMGRPEKSESRDLSPAVHTLFP
IGDAGGSQRDVADAARYAPDMSDTPGEIPVRVGDRVCPSCDEHTYESRCPDCGDWTDPHYECRDCGAVATPDESGRVECP
NCGRDLDNVTTQVIDINDEYHGALRAVGERENAFDQLKGVKGLLSAEKTPEPMAKGVLRAKHDVTAFKDGTVRYDMTDLP
VTAVTPAELDVTAGQFRELGYNQDIHGDPLEHDDQLVELRVQDVVLSDGAADHMLKTADFVDDLLTQYYGLDAFYDLDDR
DDLVGELVFGMAPHTSAAVVGRVAGFTSASVGYAHPYFHAAKRRNCFHPETNVWFRDESGEWHHDPIETLVEARLDPDTA
DEDDFGALVQALDGDVFVPSVTEDGEETLQRVEAVSKHPAPDHLLAVETKRGRELTVTPDHSMRRWTGDGIERVDARELT
AGDALPAPTQVPGDGETATSELRSESLDGTHPQRRFGDGGSVRTDEVVSVEPVRSSVDHTYSLTVAETNTLVANGLFTGQ
CDGDEDCVMLLMDGLINFSKSYLPDKRGGRMDAPLVMSSRIDPAEIDDEAHNIDIDREYPREFYEATRELADPEDVADLI
TLAESTVGTDEEYTGFGHTHATSNIHLGPSLSAYKTLGSMMDKMDAQLELARKLRSVAETDVAERVIEYHFLPDLIGNLR
AFSRQETRCLDCGEKYRRMPLSGDCRECGGRVNLTVHEGSVNKYMDTAMRVATEYDCREYTKQRLEIMDRRLESVFEDDT
NKQSGISDFM
polD2 encodes the large subunit of the heterodimeric euryarchaeal specific D family DNA polymerase on the large chromosome. This polymerase is thought to act at the lagging strand and the polD2 gene has been determined to be essential.See Berquist et al. [BMC Genet. 2007 Jun 8;8:31](https://www.ncbi.nlm.nih.gov/pubmed/17559652).