The
Halobacterium
R1
Genome
Log in
Haloarchaeal Genomes
DasSarma Home
UMB
Search
Gene Table
Genome Map
Transcriptome Map
Transcriptome Query
Transcriptome Plot
Metabolism
Genome Comparator
Comparative Genomics
Blast Genome
Blast Proteome
Sequence Editor
Publications
Resources
Loading
Loading...
sopI
Gene ID
3348
Gene Name
sopI
Annotation
sensory rhodopsin I
Location
chromosome:1227934→1228653
Gene type
Functional gene
GC content
0.669444444444444
Hydropathicity
0.865690376569038
DNA (720 bp,
Edit
)
>sopI|3348|1227934|For|1228653
ATGGACGCCGTCGCAACCGCCTACCTCGGCGGCGCGGTCGCGCTCATCGTCGGTGTGGCGTTCGTCTGGTTGCTGTACCG
GTCGTTGGATGGCTCCCCGCATCAGTCGGCGCTCGCGCCGCTGGCCATCATTCCCGTGTTCGCGGGCCTGTCCTACGTGG
GGATGGCGTACGACATCGGAACGGTGATCGTAAACGGGAACCAGATCGTCGGGCTGCGGTACATCGACTGGCTCGTGACG
ACGCCGATCCTCGTGGGGTACGTCGGCTACGCCGCGGGGGCGTCCCGTCGCAGCATCATCGGTGTGATGGTGGCGGACGC
GCTCATGATCGCGGTGGGCGCGGGGGCGGTGGTGACTGACGGCACGCTCAAGTGGGCGCTGTTCGGCGTGTCGTCGATCT
TCCACCTGTCGCTGTTCGCGTACCTGTACGTGATCTTTCCGCGGGTCGTGCCCGACGTGCCCGAGCAGATCGGGCTGTTC
AACCTGCTGAAAAACCACATCGGGCTGCTGTGGTTGGCGTACCCGCTGGTGTGGCTGTTCGGCCCGGCCGGCATCGGGGA
GGCAACGGCTGCCGGCGTCGCGCTCACGTACGTGTTCTTGGACGTGCTCGCGAAGGTGCCGTACGTGTATTTCTTCTACG
CGCGGCGTCGCGTGTTCATGCACTCGGAGTCGCCGCCGGCTCCCGAGCAGGCGACCGTCGAGGCGACGGCGGCGGACTGA
pI
0
MW (k)
0
Translation (240 aa,
Edit
)
>sopI|3348|gene
MDAVATAYLGGAVALIVGVAFVWLLYRSLDGSPHQSALAPLAIIPVFAGLSYVGMAYDIGTVIVNGNQIVGLRYIDWLVT
TPILVGYVGYAAGASRRSIIGVMVADALMIAVGAGAVVTDGTLKWALFGVSSIFHLSLFAYLYVIFPRVVPDVPEQIGLF
NLLKNHIGLLWLAYPLVWLFGPAGIGEATAAGVALTYVFLDVLAKVPYVYFFYARRRVFMHSESPPAPEQATVEATAAD
Set Format
Select format
Ace database
BSML
EMBL database
FASTA
GAME XML
GCG
GenBank
Phred
PIR database
Phred
plain text
SwissProt
tab-delimited
TIGR XML
NCBI TinySeq XML
Comment