|
Pairwise sequence scores | |||||||||||||||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Consensus score | 498 | hla0515 | HVO_A0615 | Hut1078 | NP3636A | HQ1268A | VNG1836 | hla1628 | HVO_1233 | NP3734A | HQ1388A | Hut1351 | Hbo1027 | Hbo0314 | HQ1866A | NP4552A | rrnAC2900 | rrnAC1715 | rrnAC2338 | Hmu2321 | Hmu2322 | HVO_1992 | Hbo2395 | hla1266 | HVO_0497 | HVO_0498 | Hmu0012 | rrnAC1714 | rrnAC2339 | VNG0101 | NP5064A | Hut0484 | hla1936 | Hut0483 | Hut0250 | Hmu0316 | Hmu2547 |
420 | hla0515 | 499 | 417 | 417 | 409 | 431 | 439 | 431 | 398 | 402 | 377 | 421 | 406 | 379 | 374 | 394 | 424 | 398 | 407 | 392 | 393 | 410 | 390 | 420 | 438 | 439 | 426 | 414 | 412 | 415 | 413 | 404 | 432 | 420 | 435 | 421 | 408 |
383 | HVO_A0615 | 417 | 725 | 504 | 505 | 419 | 448 | 495 | 347 | 405 | 368 | 369 | 404 | 360 | 354 | 380 | 401 | 359 | 374 | 361 | 362 | 401 | 398 | 393 | 412 | 410 | 374 | 378 | 386 | 365 | 376 | 368 | 383 | 371 | 398 | 400 | 387 |
393 | Hut1078 | 417 | 504 | 526 | 505 | 425 | 448 | 476 | 345 | 410 | 352 | 373 | 401 | 366 | 360 | 386 | 405 | 367 | 372 | 367 | 372 | 409 | 411 | 391 | 410 | 408 | 374 | 388 | 393 | 388 | 386 | 378 | 393 | 381 | 398 | 404 | 391 |
395 | NP3636A | 409 | 505 | 505 | 526 | 414 | 445 | 473 | 357 | 417 | 364 | 375 | 413 | 370 | 364 | 390 | 403 | 371 | 384 | 369 | 374 | 411 | 413 | 403 | 422 | 420 | 386 | 390 | 395 | 390 | 388 | 380 | 395 | 383 | 390 | 396 | 389 |
416 | HQ1268A | 431 | 419 | 425 | 414 | 500 | 456 | 451 | 373 | 373 | 391 | 401 | 415 | 392 | 386 | 412 | 437 | 403 | 397 | 406 | 395 | 429 | 413 | 411 | 447 | 445 | 409 | 411 | 424 | 411 | 404 | 408 | 435 | 423 | 414 | 408 | 411 |
428 | VNG1836 | 439 | 448 | 448 | 445 | 456 | 537 | 494 | 378 | 391 | 378 | 400 | 410 | 394 | 395 | 414 | 436 | 397 | 400 | 393 | 400 | 425 | 405 | 424 | 443 | 441 | 409 | 416 | 426 | 423 | 421 | 406 | 428 | 416 | 427 | 407 | 410 |
433 | hla1628 | 431 | 495 | 476 | 473 | 451 | 494 | 652 | 385 | 383 | 395 | 401 | 417 | 396 | 397 | 421 | 437 | 402 | 407 | 400 | 405 | 432 | 412 | 431 | 450 | 448 | 414 | 417 | 433 | 431 | 426 | 411 | 433 | 421 | 419 | 408 | 411 |
412 | HVO_1233 | 398 | 347 | 345 | 357 | 373 | 378 | 385 | 495 | 346 | 364 | 394 | 395 | 402 | 403 | 405 | 394 | 393 | 403 | 393 | 383 | 398 | 377 | 425 | 422 | 420 | 415 | 396 | 414 | 407 | 409 | 387 | 420 | 409 | 387 | 388 | 381 |
413 | NP3734A | 402 | 405 | 410 | 417 | 373 | 391 | 383 | 346 | 495 | 392 | 393 | 405 | 378 | 379 | 371 | 398 | 382 | 406 | 383 | 396 | 412 | 413 | 401 | 403 | 404 | 419 | 401 | 405 | 410 | 422 | 407 | 393 | 405 | 425 | 428 | 422 |
425 | HQ1388A | 377 | 368 | 352 | 364 | 391 | 378 | 395 | 364 | 392 | 743 | 390 | 409 | 424 | 409 | 419 | 411 | 431 | 446 | 448 | 444 | 411 | 395 | 408 | 415 | 416 | 431 | 441 | 429 | 429 | 425 | 431 | 408 | 413 | 416 | 417 | 410 |
417 | Hut1351 | 421 | 369 | 373 | 375 | 401 | 400 | 401 | 394 | 393 | 390 | 498 | 390 | 387 | 388 | 393 | 443 | 393 | 408 | 400 | 393 | 410 | 382 | 425 | 426 | 428 | 433 | 405 | 417 | 421 | 414 | 404 | 416 | 417 | 436 | 444 | 438 |
417 | Hbo1027 | 406 | 404 | 401 | 413 | 415 | 410 | 417 | 395 | 405 | 409 | 390 | 501 | 408 | 393 | 416 | 408 | 419 | 421 | 405 | 406 | 422 | 423 | 429 | 433 | 435 | 424 | 417 | 425 | 424 | 424 | 437 | 423 | 419 | 411 | 410 | 403 |
446 | Hbo0314 | 379 | 360 | 366 | 370 | 392 | 394 | 396 | 402 | 378 | 424 | 387 | 408 | 493 | 478 | 444 | 407 | 439 | 443 | 433 | 435 | 408 | 380 | 433 | 418 | 416 | 439 | 458 | 448 | 443 | 446 | 440 | 417 | 422 | 428 | 417 | 410 |
447 | HQ1866A | 374 | 354 | 360 | 364 | 386 | 395 | 397 | 403 | 379 | 409 | 388 | 393 | 478 | 491 | 429 | 408 | 424 | 436 | 424 | 426 | 409 | 381 | 434 | 419 | 417 | 440 | 443 | 449 | 444 | 447 | 425 | 418 | 423 | 429 | 418 | 411 |
456 | NP4552A | 394 | 380 | 386 | 390 | 412 | 414 | 421 | 405 | 371 | 419 | 393 | 416 | 444 | 429 | 498 | 415 | 453 | 457 | 447 | 449 | 435 | 407 | 444 | 443 | 441 | 437 | 456 | 458 | 457 | 444 | 438 | 437 | 432 | 421 | 410 | 403 |
434 | rrnAC2900 | 424 | 401 | 405 | 403 | 437 | 436 | 437 | 394 | 398 | 411 | 443 | 408 | 407 | 408 | 415 | 498 | 408 | 433 | 425 | 418 | 426 | 398 | 430 | 449 | 451 | 453 | 422 | 434 | 441 | 434 | 412 | 433 | 422 | 448 | 461 | 464 |
455 | rrnAC1715 | 398 | 359 | 367 | 371 | 403 | 397 | 402 | 393 | 382 | 431 | 393 | 419 | 439 | 424 | 453 | 408 | 497 | 452 | 447 | 460 | 410 | 394 | 417 | 416 | 414 | 448 | 455 | 447 | 452 | 455 | 461 | 438 | 443 | 432 | 413 | 406 |
459 | rrnAC2338 | 407 | 374 | 372 | 384 | 397 | 400 | 407 | 403 | 406 | 446 | 408 | 421 | 443 | 436 | 457 | 433 | 452 | 499 | 460 | 462 | 430 | 402 | 447 | 446 | 447 | 465 | 451 | 461 | 456 | 459 | 445 | 430 | 435 | 446 | 435 | 428 |
452 | Hmu2321 | 392 | 361 | 367 | 369 | 406 | 393 | 400 | 393 | 383 | 448 | 400 | 405 | 433 | 424 | 447 | 425 | 447 | 460 | 500 | 484 | 430 | 402 | 425 | 436 | 434 | 457 | 446 | 456 | 449 | 452 | 440 | 435 | 440 | 429 | 430 | 423 |
465 | Hmu2322 | 393 | 362 | 372 | 374 | 395 | 400 | 405 | 383 | 396 | 444 | 393 | 406 | 435 | 426 | 449 | 418 | 460 | 462 | 484 | 497 | 420 | 392 | 427 | 426 | 424 | 458 | 459 | 457 | 462 | 465 | 453 | 436 | 441 | 442 | 423 | 416 |
444 | HVO_1992 | 410 | 401 | 409 | 411 | 429 | 425 | 432 | 398 | 412 | 411 | 410 | 422 | 408 | 409 | 435 | 426 | 410 | 430 | 430 | 420 | 503 | 475 | 437 | 473 | 471 | 437 | 428 | 446 | 437 | 432 | 417 | 435 | 439 | 416 | 439 | 432 |
416 | Hbo2395 | 390 | 398 | 411 | 413 | 413 | 405 | 412 | 377 | 413 | 395 | 382 | 423 | 380 | 381 | 407 | 398 | 394 | 402 | 402 | 392 | 475 | 498 | 416 | 445 | 443 | 409 | 400 | 418 | 409 | 411 | 408 | 426 | 430 | 388 | 411 | 404 |
460 | hla1266 | 420 | 393 | 391 | 403 | 411 | 424 | 431 | 425 | 401 | 408 | 425 | 429 | 433 | 434 | 444 | 430 | 417 | 447 | 425 | 427 | 437 | 416 | 494 | 465 | 463 | 451 | 444 | 462 | 455 | 457 | 447 | 456 | 457 | 447 | 424 | 417 |
454 | HVO_0497 | 438 | 412 | 410 | 422 | 447 | 443 | 450 | 422 | 403 | 415 | 426 | 433 | 418 | 419 | 443 | 449 | 416 | 446 | 436 | 426 | 473 | 445 | 465 | 501 | 499 | 457 | 438 | 456 | 449 | 442 | 427 | 453 | 449 | 436 | 430 | 423 |
452 | HVO_0498 | 439 | 410 | 408 | 420 | 445 | 441 | 448 | 420 | 404 | 416 | 428 | 435 | 416 | 417 | 441 | 451 | 414 | 447 | 434 | 424 | 471 | 443 | 463 | 499 | 501 | 459 | 436 | 454 | 447 | 440 | 425 | 451 | 447 | 434 | 428 | 421 |
479 | Hmu0012 | 426 | 374 | 374 | 386 | 409 | 409 | 414 | 415 | 419 | 431 | 433 | 424 | 439 | 440 | 437 | 453 | 448 | 465 | 457 | 458 | 437 | 409 | 451 | 457 | 459 | 498 | 463 | 471 | 476 | 479 | 457 | 462 | 467 | 466 | 459 | 452 |
482 | rrnAC1714 | 414 | 378 | 388 | 390 | 411 | 416 | 417 | 396 | 401 | 441 | 405 | 417 | 458 | 443 | 456 | 422 | 455 | 451 | 446 | 459 | 428 | 400 | 444 | 438 | 436 | 463 | 498 | 474 | 467 | 470 | 464 | 453 | 458 | 451 | 432 | 425 |
490 | rrnAC2339 | 412 | 386 | 393 | 395 | 424 | 426 | 433 | 414 | 405 | 429 | 417 | 425 | 448 | 449 | 458 | 434 | 447 | 461 | 456 | 457 | 446 | 418 | 462 | 456 | 454 | 471 | 474 | 498 | 475 | 478 | 456 | 461 | 466 | 455 | 444 | 437 |
483 | VNG0101 | 415 | 365 | 388 | 390 | 411 | 423 | 431 | 407 | 410 | 429 | 421 | 424 | 443 | 444 | 457 | 441 | 452 | 456 | 449 | 462 | 437 | 409 | 455 | 449 | 447 | 476 | 467 | 475 | 568 | 483 | 461 | 464 | 459 | 460 | 441 | 434 |
486 | NP5064A | 413 | 376 | 386 | 388 | 404 | 421 | 426 | 409 | 422 | 425 | 414 | 424 | 446 | 447 | 444 | 434 | 455 | 459 | 452 | 465 | 432 | 411 | 457 | 442 | 440 | 479 | 470 | 478 | 483 | 495 | 473 | 466 | 471 | 463 | 444 | 437 |
464 | Hut0484 | 404 | 368 | 378 | 380 | 408 | 406 | 411 | 387 | 407 | 431 | 404 | 437 | 440 | 425 | 438 | 412 | 461 | 445 | 440 | 453 | 417 | 408 | 447 | 427 | 425 | 457 | 464 | 456 | 461 | 473 | 491 | 456 | 473 | 453 | 422 | 415 |
469 | hla1936 | 432 | 383 | 393 | 395 | 435 | 428 | 433 | 420 | 393 | 408 | 416 | 423 | 417 | 418 | 437 | 433 | 438 | 430 | 435 | 436 | 435 | 426 | 456 | 453 | 451 | 462 | 453 | 461 | 464 | 466 | 456 | 497 | 478 | 434 | 427 | 420 |
474 | Hut0483 | 420 | 371 | 381 | 383 | 423 | 416 | 421 | 409 | 405 | 413 | 417 | 419 | 422 | 423 | 432 | 422 | 443 | 435 | 440 | 441 | 439 | 430 | 457 | 449 | 447 | 467 | 458 | 466 | 459 | 471 | 473 | 478 | 495 | 451 | 432 | 425 |
463 | Hut0250 | 435 | 398 | 398 | 390 | 414 | 427 | 419 | 387 | 425 | 416 | 436 | 411 | 428 | 429 | 421 | 448 | 432 | 446 | 429 | 442 | 416 | 388 | 447 | 436 | 434 | 466 | 451 | 455 | 460 | 463 | 453 | 434 | 451 | 495 | 464 | 451 |
444 | Hmu0316 | 421 | 400 | 404 | 396 | 408 | 407 | 408 | 388 | 428 | 417 | 444 | 410 | 417 | 418 | 410 | 461 | 413 | 435 | 430 | 423 | 439 | 411 | 424 | 430 | 428 | 459 | 432 | 444 | 441 | 444 | 422 | 427 | 432 | 464 | 501 | 488 |
437 | Hmu2547 | 408 | 387 | 391 | 389 | 411 | 410 | 411 | 381 | 422 | 410 | 438 | 403 | 410 | 411 | 403 | 464 | 406 | 428 | 423 | 416 | 432 | 404 | 417 | 423 | 421 | 452 | 425 | 437 | 434 | 437 | 415 | 420 | 425 | 451 | 488 | 503 |
103 symbols consensus ----------------------------------MATGTVDFFNDTGGYGFIETD----D #oth 1111111222222221123223312343443342..6.3.1..211......21222121 hla0515 ::::::::::::::::::::::::::::::::::::::K::::::::::::::::::::: HVO_A0615 :::::::VDERLSKGRGTLTLRSVIRRTTLDLYV::H:K:::::::::::::S::DGDL: Hut1078 ::::::::::::::::::::::::::::::::::::N:K:::::::::::::S::DGDL: NP3636A ::::::::::::::::::::::::::::::::::::N:K:::::::::::::S::DGDL: HQ1268A ::::::::::::::::::::::::::::::::::::E:K:::::::::::::S::::::: VNG1836 ::::::::::::::::::::::::::::::::::::S:K:::::::::::::S::ADDV: hla1628 ::::::::::::::::::VTLARVIPERAVCLFA::N:K:::::::::::::S::DGDL: HVO_1233 ::::::::::::::::::::::::::::::::::::K:K:A::KSS:::::::::::::: NP3734A ::::::::::::::::::::::::::::::::::::::::::::::::::::::E::::: HQ1388A MNIPLDNTFSKKISRRGITHRTTVISNKGIDILA::Q:::::::::::::::S:E::::: Hut1351 ::::::::::::::::::::::::::::::::::::N:K::::H::::::::::A::::: Hbo1027 ::::::::::::::::::::::::::::::::::::E:K:::::::::::::::E::::: Hbo0314 ::::::::::::::::::::::::::::::::::::K:::A::::::::::::SE::::: HQ1866A ::::::::::::::::::::::::::::::::::::K:::A::::::::::::SE::::: NP4552A ::::::::::::::::::::::::::::::::::::K:E:::::::::::::D::::::E rrnAC2900 ::::::::::::::::::::::::::::::::::::N:K:::::::::::::S:E::::: rrnAC1715 ::::::::::::::::::::::::::::::::::::::::::::::::::::D:E::::: rrnAC2338 ::::::::::::::::::::::::::::::::::::K:::::::::::::::D:E::::: Hmu2321 ::::::::::::::::::::::::::::::::::::Q:::::::::::::::D:E::::: Hmu2322 ::::::::::::::::::::::::::::::::::::::::::::::::::::D:E::::: HVO_1992 ::::::::::::::::::::::::::::::::::::K:N:::::::::::::S::::::: Hbo2395 ::::::::::::::::::::::::::::::::::::K:N:::::::::::::S::::::: hla1266 ::::::::::::::::::::::::::::::::::::K:K::::::::::::::S:::::: HVO_0497 ::::::::::::::::::::::::::::::::::::K:K:::::::::::::S::::::: HVO_0498 ::::::::::::::::::::::::::::::::::::K:K:::::::::::::S::::::: Hmu0012 ::::::::::::::::::::::::::::::::::::::::::::::::::::::E::::: rrnAC1714 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: rrnAC2339 ::::::::::::::::::::::::::::::::::::E::::::::::::::::::::::: VNG0101 ::::::::::::::::::::::::MSARRHSTVA::::E:::::::::::::::E::::: NP5064A ::::::::::::::::::::::::::::::::::::::::::::::::::::::E::::: Hut0484 ::::::::::::::::::::::::::::::::::::::::::::::::::::::E::::: hla1936 ::::::::::::::::::::::::::::::::::::::K::::::::::::::::::::: Hut0483 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: Hut0250 ::::::::::::::::::::::::::::::::::::::::::::::::::::::E::::: Hmu0316 ::::::::::::::::::::::::::::::::::::N:::::::::::::::::E::::: Hmu2547 ::::::::::::::::::::::::::::::::::::N:::::::::::::::::E::::: consensus ADEDVFFHMEDVGGPDLEEGQEVEFDIEQADKGPRATNLTRL- #oth 511........13.2..1..2121.1.2312.....5.14.41 hla0515 ::D:::::::::E:::::::::L:::::SSP:::::S:VV:Q: HVO_A0615 D:::::::::::::D::T::T:::::::SSP:::::A:VV:Q: Hut1078 E:::::::::::::E::T::T:::::::SSP:::::A::V:Q: NP3636A D:::::::::::::E::T::T:::::::SSP:::::A:VV::: HQ1268A T:D::::::::::::::::::::::E:::SP:::::A::I:N: VNG1836 D:::::::::::::::::::::::::::SSP::::::::V:NE hla1628 D:::::::::::::::::::::::::::SSP::::::::::N: HVO_1233 H:D::::::::IE:::::::::::::::E:::::::::V:::: NP3734A ::::::::::::::E::T::TDL::::DE:P:::::::VV:V: HQ1388A :::::::::::I:::::::::DL::E:V::::::::K:VE::: Hut1351 ::D:::::::::S::::::::DI:::::::E:::::::VV:A: Hbo1027 H:::::::::::::::::::T:I::E::D:P:::::K:V:::: Hbo0314 S:::::::::::::::::::::::::::::::::::K::Q::: HQ1866A SE:::::::::::::::::::::::::::::::::::::Q::: NP4552A S::::::::::I::::::::::::::::::::::::K:::::: rrnAC2900 ::D:::::::::::::::::E:I:::::::::::::::VV:N: rrnAC1715 S::::::::::ID::::::::::::E::::::::::K:::::: rrnAC2338 :::::::::::I::::::::::L:::::::::::::N:V:::: Hmu2321 ::D::::::::I:::::::::::::::V::::::::E:::::: Hmu2322 :::::::::::I:::::::::::::::V::::::::E:::::: HVO_1992 ::D::::::::I::::::::TD::::::::P:::::::::::: Hbo2395 ::D::::::::I::E:::::TD:::E::D:P:::::::::::: hla1266 ::::::::::::::::::::::::::::E:E:::::::V:::: HVO_0497 ::D:::::::::::::::::::::::::::P:::::::V:::: HVO_0498 ::D:::::::::::::::::::I:::::::P:::::::V:::: Hmu0012 ::D:::::::::::::::::::I:::::::::::::::V:::: rrnAC1714 ::::::::::::::::::::::::::::::::::::K::E::: rrnAC2339 ::::::::::::::::::::::::::::::::::::::::::: VNG0101 ::::::::::::::::::::::::::::::::::::::::::: NP5064A ::::::::::::::::::::::::::::E:::::::::::::: Hut0484 :::::::::::::::::::::::::E::E:E:::::K:::::: hla1936 ::D::::::::::::::::::::::E::ES::::::::::::: Hut0483 ::D::::::::::::::::::::::E::E:E:::::::::::: Hut0250 ::::::::::::::::::::::::::::::E:::::::VV:Q: Hmu0316 ::D:::::::::::::::::TD::::::::::::::::VV:Q: Hmu2547 ::D:::::::::::::::::TD:D::::::::::::::VV:N: