|
Pairwise sequence scores | |||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Consensus score | 884 | hla0295 | NP3704A | HQ2511A | HVO_1342 | Hbo0207 | HQ1629A | Hbo0477 | Hut1508 | hla0968 | NP4120A | rrnB0277 | HVO_0964 | pNG7134 | VNG5076 | VNG5221 | VNG6073 | VNG6453 | Hmu3293 |
506 | hla0295 | 1195 | 421 | 415 | 387 | 371 | 489 | 489 | 487 | 464 | 430 | 465 | 485 | 452 | 460 | 460 | 460 | 460 | 448 |
480 | NP3704A | 421 | 845 | 398 | 355 | 384 | 425 | 415 | 410 | 460 | 444 | 403 | 430 | 408 | 442 | 442 | 442 | 442 | 425 |
537 | HQ2511A | 415 | 398 | 843 | 576 | 601 | 445 | 425 | 442 | 433 | 428 | 428 | 433 | 450 | 481 | 481 | 481 | 481 | 473 |
517 | HVO_1342 | 387 | 355 | 576 | 824 | 629 | 402 | 396 | 409 | 400 | 395 | 397 | 464 | 498 | 468 | 468 | 468 | 468 | 469 |
527 | Hbo0207 | 371 | 384 | 601 | 629 | 843 | 422 | 439 | 423 | 405 | 418 | 410 | 448 | 454 | 453 | 453 | 453 | 453 | 483 |
573 | HQ1629A | 489 | 425 | 445 | 402 | 422 | 1162 | 701 | 565 | 476 | 460 | 517 | 597 | 518 | 497 | 497 | 497 | 497 | 546 |
556 | Hbo0477 | 489 | 415 | 425 | 396 | 439 | 701 | 1089 | 522 | 402 | 416 | 539 | 601 | 480 | 496 | 496 | 496 | 496 | 528 |
553 | Hut1508 | 487 | 410 | 442 | 409 | 423 | 565 | 522 | 1036 | 432 | 485 | 484 | 586 | 545 | 502 | 502 | 502 | 502 | 514 |
560 | hla0968 | 464 | 460 | 433 | 400 | 405 | 476 | 402 | 432 | 1506 | 516 | 404 | 467 | 446 | 508 | 508 | 508 | 508 | 503 |
548 | NP4120A | 430 | 444 | 428 | 395 | 418 | 460 | 416 | 485 | 516 | 834 | 434 | 525 | 511 | 527 | 527 | 527 | 527 | 525 |
549 | rrnB0277 | 465 | 403 | 428 | 397 | 410 | 517 | 539 | 484 | 404 | 434 | 1017 | 577 | 528 | 523 | 523 | 523 | 523 | 533 |
631 | HVO_0964 | 485 | 430 | 433 | 464 | 448 | 597 | 601 | 586 | 467 | 525 | 577 | 1057 | 601 | 577 | 577 | 577 | 577 | 609 |
687 | pNG7134 | 452 | 408 | 450 | 498 | 454 | 518 | 480 | 545 | 446 | 511 | 528 | 601 | 894 | 655 | 655 | 655 | 655 | 675 |
793 | VNG5076 | 460 | 442 | 481 | 468 | 453 | 497 | 496 | 502 | 508 | 527 | 523 | 577 | 655 | 893 | 893 | 893 | 893 | 680 |
793 | VNG5221 | 460 | 442 | 481 | 468 | 453 | 497 | 496 | 502 | 508 | 527 | 523 | 577 | 655 | 893 | 893 | 893 | 893 | 680 |
793 | VNG6073 | 460 | 442 | 481 | 468 | 453 | 497 | 496 | 502 | 508 | 527 | 523 | 577 | 655 | 893 | 893 | 893 | 893 | 680 |
793 | VNG6453 | 460 | 442 | 481 | 468 | 453 | 497 | 496 | 502 | 508 | 527 | 523 | 577 | 655 | 893 | 893 | 893 | 893 | 680 |
714 | Hmu3293 | 448 | 425 | 473 | 469 | 483 | 546 | 528 | 514 | 503 | 525 | 533 | 609 | 675 | 680 | 680 | 680 | 680 | 892 |
206 symbols consensus -----MATD-----------------------------TAA------------------- #oth 112344663111111134552254335326433445348566111111111111111111 hla0295 MSDTAD:::GGESTKSERERIRERKLRELQEELEREGEIGGE:::::::::::::::::: NP3704A ::::::SRA:::::::::::::::::::::::::::::---::::::::::::::::::: HQ2511A ::::::SAP:::::::::::::::::::::::::::::---::::::::::::::::::: HVO_1342 ::::::S:P:::::::::::::::::::::::::::::---::::::::::::::::::: Hbo0207 ::::::S:P:::::::::::::::::::::::::::::---::::::::::::::::::: HQ1629A MSDSQSDS:::::::::LADIRAQKRSELKQKLTEDTEDTED:::::::::::::::::: Hbo0477 MSEKSSDA::::::::ELDEIRRRKRKQLESKLEDGTSPETD:::::::::::::::::: Hut1508 ::::MTGG::::::::DIEAIKQRRKEQLMQ:::::::QDQS:::::::::::::::::: hla0968 ::::::RLP:::::::AAGTPRAVARLRVHEEPHRRALV::DHRIHAARFVAPGFEPSDL NP4120A ::::::SSE:::::::::::::::::::::::::::::---::::::::::::::::::: rrnB0277 :::::-M:::::::::ELAEIRQKKLEELRNGERGT::A:EN:::::::::::::::::: HVO_0964 ::::::SD::::::::ELTDIRKQKREQLESKLRGDGGS::K:::::::::::::::::: pNG7134 ::::::::::::::::::::::::::::::::::::::::SD:::::::::::::::::: VNG5076 :::::::::::::::::::::::::::::::::::::::::T:::::::::::::::::: VNG5221 :::::::::::::::::::::::::::::::::::::::::T:::::::::::::::::: VNG6073 :::::::::::::::::::::::::::::::::::::::::T:::::::::::::::::: VNG6453 :::::::::::::::::::::::::::::::::::::::::T:::::::::::::::::: Hmu3293 ::::::T:::::::::::::::::::::::::::::::IE:E:::::::::::::::::: consensus ----------------------------------TGTASPDEPIHVEGQDELDDVVADHD #oth 111111111111111111111111222333333456454353.25253554145625565 hla0295 :::::::::::::::::::::::::::PAEKLGEES::T:::::D:A:PE:FRR::DE:: NP3704A ::::::::::::::::::::::::::::::::::---:T::::VS:::PGH:EERLDE:E HQ2511A ::::::::::::::::::::::::::::::::::---:AT:::V:::S:SD:ESF:S::: HVO_1342 ::::::::::::::::::::::::::::::::::---KTT:A:::I:SS:Q::EL:::SA Hbo0207 ::::::::::::::::::::::::::::::::::---E:RGT:V:::S::H:EEL::GEN HQ1629A ::::::::::::::::::::::::TGDDTTNNEA:TAKT:TD:::ITSA::FNAA:TE:: Hbo0477 :::::::::::::::::::::::::::::::::RMSAE::AD::D:N:G::FESL::STS Hut1508 ::::::::::::::::::::::::::::::::::EQ:SA:N::::::STEQFNE::GT:: hla0968 RRRIDQDTVQFDVRYCGFHPKPLSEWSEYDEVMSSTD:V:T:::QLADP::F::Y::::: NP4120A ::::::::::::::::::::::::::::::::::SAST::S:::PI:ETNG::A:TSEY: rrnB0277 ::::::::::::::::::::::::::::::::::ENSE:AA::V::H:AGD:Q:T:D:-G HVO_0964 ::::::::::::::::::::::::::::::::::EAS:G:A:::::D:A:::::A::SY: pNG7134 ::::::::::::::::::::::::::::::::::A::TTTN::L:ID:A:Q:::::NKY: VNG5076 :::::::::::::::::::::::::::::::::::::::::::LY:N::T:::::TS:N: VNG5221 :::::::::::::::::::::::::::::::::::::::::::LY:N::T:::::TS:N: VNG6073 :::::::::::::::::::::::::::::::::::::::::::LY:N::T:::::TS:N: VNG6453 :::::::::::::::::::::::::::::::::::::::::::LY:N::T:::::TS:N: Hmu3293 ::::::::::::::::::::::::::::::::::A:AGT:T::V::D::S:::GA:::YE consensus VVLVDFYADWCGPCQMLEPTVETLAAETDAAVAKVDVDENQALASAYGVRGVPTLVLFAD #oth 3.12.21.......1121.42452.45.3.3.2.1.1.22151.55422111..242142 hla0295 ::V::C::::::::::M:::I:AI:SD:::::::::::A:PEI:QQL:A:SI:::LVY:: NP3704A T:::::::::::::K::A:KLSAV::::::::L:::I:A::::::E:Q:Q:::::Y::HN HQ2511A I::::Y::::::::K:::::::EI:T::N:L:::::I::L:S::QEK:I:S::::QFY:: HVO_1342 :::::YH:::::::K::::::KEI:E::::V:::::I::L:E::REQ:I:S::::QFY:G Hbo0207 ::::::::::::::K::::::DEI::::::L:L:::I::L:E::RDQ:I:S::::QFY:: HQ1629A :::::::::::::::::::::KS:::::A:T:L:::I:QH:S::QQ:Q:::::::L::N: Hbo0477 ::::::::::::::K:IA:::NS:::::T:T:::::I:Q::T:::Q:N:::::::L::S: Hut1508 :::A::::::::::K::::I::E:::D:::::::::::AH:Q:::Q:Q::::::VIV::G hla0968 ::::::::::::::::M::A::AI:ND:::::L:::::QH::::GE:::Q:I:::LV:V: NP4120A T:::::::::::::::M::A::SV:ES:::::I:::::A::D::AEF::Q::::::V:V: rrnB0277 ::::::::::::::KQ:::V::RI::G:A:T:::::I:A::Q::AK::::S::::L::V: HVO_0964 ::::::::::::::K::::::KK::EN:::::::::::A::E::AQ:Q::::::M::::: pNG7134 L::T:::::::::::::::V::::::::::::::::::A::Q::QS:::::::::I:::G VNG5076 :::A:::::::::::::::V:::::EQ:::::::I::::::::::::::::::::::::: VNG5221 :::A:::::::::::::::V:::::EQ:::::::I::::::::::::::::::::::::: VNG6073 :::A:::::::::::::::V:::::EQ:::::::I::::::::::::::::::::::::: VNG6453 :::A:::::::::::::::V:::::EQ:::::::I::::::::::::::::::::::::: Hmu3293 :::A:::::::::::::::V:::::::::::::::::::::Q::T::::::::::::::: consensus GEQVEQVVGVQDEDALRDLIESYT-- #oth 12622242.32445615642355651 hla0295 ::A:DRFT:A::RTT:ESA::RAA:: NP3704A :DVEDRM::M:::AT:KQK:AAVQ:: HQ2511A :TMA:::I::::KSD:MSV:DGL:D: HVO_1342 ::::KE:I:::SKED:V:I::AAA:: Hbo0207 :::AK::I::::K:D:VEVV:QLSS: HQ1629A A:T:::I:::R::ST::S::QQ::Q: Hbo0477 :DP:::::::R:KST::G:::Q:::: Hut1508 ::VA::::::R:QSHY:S:L:RHGSD hla0968 ::LA:RM::A:T:A::T:AVAEH:A: NP4120A ::VA:::::A:S::R::E:VDR--:: rrnB0277 ::P::RL::M:Q:PQ::S:::::::: HVO_0964 ::A:::L:::RGY:D:KN:V:AHLA: pNG7134 :::::E::::KG::D::A:::::AE: VNG5076 :::::E:::L::::::K:::::::E: VNG5221 :::::E:::L::::::K:::::::E: VNG6073 :::::E:::L::::::K:::::::E: VNG6453 :::::E:::L::::::K:::::::E: Hmu3293 :::::EI::::G::E::S:V:Q::A: