|
Pairwise sequence scores | |||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Consensus score | 2365 | HQ2259A | hla0148 | rrnAC0952 | Hmu1757 | Hut2590 | NP4650A | Hut2649 | Hbo3641 | rrnAC3062 | Hmu2777 | Hut1876 | VNG0223 | hla2711 | HVO_0639 | Hbo0889 | Hut0078 | rrnAC1698 | Hmu0612 |
1528 | HQ2259A | 2401 | 1381 | 1430 | 1360 | 1368 | 1516 | 1436 | 1479 | 1444 | 1425 | 1418 | 1404 | 1443 | 1443 | 1405 | 1402 | 1441 | 1449 |
1677 | hla0148 | 1381 | 2356 | 1338 | 1339 | 1388 | 1422 | 1450 | 1531 | 1495 | 1459 | 1350 | 1470 | 1449 | 1549 | 1475 | 1475 | 1493 | 1482 |
1621 | rrnAC0952 | 1430 | 1338 | 2987 | 1920 | 1335 | 1420 | 1419 | 1490 | 1428 | 1445 | 1377 | 1415 | 1412 | 1449 | 1419 | 1398 | 1425 | 1391 |
1604 | Hmu1757 | 1360 | 1339 | 1920 | 2972 | 1366 | 1496 | 1489 | 1510 | 1418 | 1514 | 1382 | 1372 | 1443 | 1487 | 1452 | 1353 | 1394 | 1381 |
1640 | Hut2590 | 1368 | 1388 | 1335 | 1366 | 2382 | 1336 | 1427 | 1432 | 1360 | 1434 | 1497 | 1505 | 1423 | 1564 | 1471 | 1534 | 1538 | 1483 |
1668 | NP4650A | 1516 | 1422 | 1420 | 1496 | 1336 | 2399 | 1472 | 1496 | 1501 | 1479 | 1429 | 1446 | 1490 | 1527 | 1513 | 1441 | 1486 | 1465 |
1705 | Hut2649 | 1436 | 1450 | 1419 | 1489 | 1427 | 1472 | 2418 | 1526 | 1532 | 1573 | 1446 | 1506 | 1548 | 1587 | 1543 | 1490 | 1548 | 1497 |
1845 | Hbo3641 | 1479 | 1531 | 1490 | 1510 | 1432 | 1496 | 1526 | 2401 | 1728 | 1723 | 1565 | 1555 | 1621 | 1654 | 1601 | 1507 | 1543 | 1542 |
1753 | rrnAC3062 | 1444 | 1495 | 1428 | 1418 | 1360 | 1501 | 1532 | 1728 | 2576 | 1984 | 1450 | 1498 | 1513 | 1578 | 1476 | 1412 | 1533 | 1417 |
1779 | Hmu2777 | 1425 | 1459 | 1445 | 1514 | 1434 | 1479 | 1573 | 1723 | 1984 | 2439 | 1530 | 1527 | 1560 | 1642 | 1552 | 1498 | 1559 | 1463 |
1786 | Hut1876 | 1418 | 1350 | 1377 | 1382 | 1497 | 1429 | 1446 | 1565 | 1450 | 1530 | 2443 | 1606 | 1597 | 1680 | 1652 | 1620 | 1618 | 1613 |
1832 | VNG0223 | 1404 | 1470 | 1415 | 1372 | 1505 | 1446 | 1506 | 1555 | 1498 | 1527 | 1606 | 2339 | 1620 | 1674 | 1631 | 1657 | 1650 | 1579 |
1875 | hla2711 | 1443 | 1449 | 1412 | 1443 | 1423 | 1490 | 1548 | 1621 | 1513 | 1560 | 1597 | 1620 | 2378 | 1785 | 1800 | 1701 | 1701 | 1649 |
1936 | HVO_0639 | 1443 | 1549 | 1449 | 1487 | 1564 | 1527 | 1587 | 1654 | 1578 | 1642 | 1680 | 1674 | 1785 | 2329 | 1841 | 1789 | 1746 | 1722 |
1881 | Hbo0889 | 1405 | 1475 | 1419 | 1452 | 1471 | 1513 | 1543 | 1601 | 1476 | 1552 | 1652 | 1631 | 1800 | 1841 | 2320 | 1721 | 1707 | 1691 |
1838 | Hut0078 | 1402 | 1475 | 1398 | 1353 | 1534 | 1441 | 1490 | 1507 | 1412 | 1498 | 1620 | 1657 | 1701 | 1789 | 1721 | 2341 | 1801 | 1832 |
1864 | rrnAC1698 | 1441 | 1493 | 1425 | 1394 | 1538 | 1486 | 1548 | 1543 | 1533 | 1559 | 1618 | 1650 | 1701 | 1746 | 1707 | 1801 | 2324 | 1852 |
1818 | Hmu0612 | 1449 | 1482 | 1391 | 1381 | 1483 | 1465 | 1497 | 1542 | 1417 | 1463 | 1613 | 1579 | 1649 | 1722 | 1691 | 1832 | 1852 | 2357 |
420 symbols consensus --------------------------MDVAEASETCSRVLDEVGSAVIADREFLETVLTG #oth 111111111122222223334555654455534763882224355221423721453341 HQ2259A :::::::::::::::::::::MTIDKFSIE::GSHIE:II::IS::::T::S:::VII:: hla0148 ::::::::::::::::::::::::::::P:TVQQRSDQI::GIA:V:VSE:ST:K:::V: rrnAC0952 :::::::::::::::::::MAGLSSDLS::S:::H:LNIVER:EE::VVE:RV:FET:A: Hmu1757 ::::::::::MGAGDEPPRMVHHSGGDT:EDGAQ::LS:VERIEE:AVVE:TV:HE::SA Hut2590 ::::::::::::::::::::::::::::IDA:ATQ:RE:I:LLNE::V:::T:F:DL:V: NP4650A :::::::::::::::::::::MGVEGPSF::T:N::KKIIER:SD:::T:::::K::::A Hut2649 :::::::::::::::::::::::::::A:PDTA::VQA:I::IR::::::PTV::EITA: Hbo3641 :::::::::::::::::::::::::::::PQ:AA::DD:VEA:SA::V:E:D:::::::: rrnAC3062 MGVMESGRPPAKPRERVFVGGCLHAG::HDT:GR:SRQI::A::::::::DH:::::M:: Hmu2777 :::::::::::::::::MPSLADHSC::HET:GRA:AEI::A:::::::EDA:::A:::: Hut1876 :::::::::::::::::::::::MPSL:ISD::AR:TD:::AMEGT:::::T:::::::: VNG0223 ::::::::::::::::::::::::::::ASSVRDG::A:V:::AA:::::::::::::V: hla2711 :::::::::::::::::::::::::::::P::AAA::::V::::G::V::::::DR:TL: HVO_0639 ::::::::::::::::::::::::::::IDT::::::E:::AISE::::::A:::::::: Hbo0889 ::::::::::::::::::::::::::::IP::::A::S::A::SK::::EQ::::RIML: Hut0078 :::::::::::::::::::::::::::::::::D::TTL:::LE::I:TNQ:::::::L: rrnAC1698 ::::::::::::::::::::::::::::AT::::VS:QI:::I::::::::G:F::::L: Hmu0612 :::::::::::::::::::::::::::N:T:::DV:::::::I:::::GE:A:F::::L: consensus VLARGHVLLEDVPGTGKTLTARSFATALGLSFSRIQFTPDLLPADVTGSNVFNERERSFE #oth 4223..1.2.........22.335.62211114.1.1....1.3.13.131121643414 HQ2259A L:::::::V::::::::::::IAL:D:F::EYN::::::::::S:I::THI:D:QTGE:S hla0148 L:SD::I::::::::::::::::::N:VDV::::V::::::::S::I:::::D:KTQ::: rrnAC0952 :I::::::V:::::::::AL::VL:E::::E:T::::::::::::::::::Y::H::E:: Hmu1757 :::K::::::::::::::V:::VL:E::::E:T::::::::::::::::::Y::H:GT:: Hut2590 L::G::::I::::::::::::::T::V:::::::V:L:::::::::M::Q:::Q:D:E:: NP4650A T::::::::::::::::::::LT::Q::::E::::::::::::N:I:::H::::QTGD:: Hut2649 I:::::I:::::::::::::::::::::::E::::::::::M:S:I:::YI:Q:GTEE:H Hbo3641 :::::::::::::::::::::::I:A::::::A::::::::::::I:::::YD::QGA:: rrnAC3062 I::::::::::::::::::::Q::::::D:::K:V::::::::S:I::::::::ATGE:D Hmu2777 :::::::::::::::::::::::::N::D:::N::::::::::::I:::::Y::GTG::: Hut1876 :::::::::::::::::::::::M:E::::::N::::::::::::::::HIY:::::D:: VNG0223 F::D:::::::::::::::::::V::::::E:::V::::::::T::L:TH:::::S:E:: hla2711 I::::::::::::::::::S:::::A::::E:::V::::::::S::::T:::D:GDG::A HVO_0639 :::::::::::::::::::::::V::::::::::V:::::::::::::T:IYD::::T:: Hbo0889 ::S::::::::::::::::S:::V::::::::::V::::::::S::::T:I:::::Q::: Hut0078 ::G::::::::::::::::::::L:K::::::::V::::::::T::::THIY:::D:::: rrnAC1698 :V:K:::::::::::::::::::V:::::::::::::::::::::I::THI:::ES::L: Hmu0612 :VG::::::::::::::::::QTM:QT::::::::::::::::::I::TH::D::::::: consensus FSPGPIFANVVLADEINRAPPKTQAALLEAMEEGQVTVDGETHDLPEPFFVIATQNPVEQ #oth .53..2.2.11....1........1....1.4.4..132.3.35..7..3.1.....113 HQ2259A :QQ::L::::::::::::::::::S::::::D:Q::::G:D:YP:::::::::::::::: hla0148 :Q:::V:::::::::::::::::::::::::::::::::::::P::D::V:::::::::M rrnAC0952 :AQ::V:S::::::::::::::::S::::S:::R::S:::T::P::T::V:::::::I:: Hmu1757 ::::::::::::::::::::::::S:::::::::::S:::T::E::D::V:V:::::I:: Hut2590 :RQ::L:::::::::L::::::::S::::::::::::IE:D::P::A::::::::::I:E NP4650A :TK::V:::::::::::::::::::::::::D:S::::::T:RR::D::L:::::::::: Hut2649 :T:::V:G::::::::::::::::S::::::A:::::::::::A:::::V:::::::::: Hbo3641 :Q:::::::::::::::::::::::::::::G::::::::V:::::N::::::::::::: rrnAC3062 :Q:::V:::::::::::::::::::::::::G:K::::::V::::::::::::::::::: Hmu2777 :A:::::::::::::::::::::::::::::G:::::::::::A:::::::::::::::: Hut1876 :RE::::::::::::::::::::::::::::S:::::T::T:R::::::::::::::::S VNG0223 :R:::V:::::::::::::::::::::::::::::::I::::MA::::::::::::::D: hla2711 ::::::::::::::::::::::::::::::::::::::::::::::D::Y:::::::::S HVO_0639 :::::::::::::::::::::::::::::::::::::::::::Q::S::::::::::::: Hbo0889 ::E::::::::::::::::::::::::::::::::::::::::E::K::::::::::::S Hut0078 ::E::::::I::::::::::::::S::::::::::::AG:D:YQ::K::::::::::::M rrnAC1698 :TE::V::::L:::::::::::::S:::::::::::::::D:YE::::::::::::::DM Hmu0612 :NE:::::::::::::::::::::S:::::::::::::::D:YE::R::::::::::::M consensus EGTFELPEAQRDRFIVKTSIGYPDRDGERELLDRRAGRDAQSPSVEAVLDPERVRALRRV #oth 1.1.6..1..5...6312321..2:41153116..46.8774.21552448473:73185 HQ2259A ::::S:::::Q::::L:::::::S:E::L::IN::SN:QLTT:E:D::IN:DQ:VT::QT hla0148 :::::::A::K::::::::L:::::A::L::I::::::Q:S::::RT:CSLDTLTQ:::A rrnAC0952 ::::Q:::::::::S::::MA:::VE::MG::::::N:RTL::::DP:V:::T::::QEC Hmu1757 ::::R:::::::::S::::L:::SV:::M:::::::K:RTLA::::P:IEEAT::E:QDL Hut2590 S:::::::::K:::LI::QL:::::S:::TI::::LA:::AT::::KL:ESGT:QS::D: NP4650A :::::::::::::::::S::::::KE::L:::E::SQ:H:KM:T:DS:::T:GAQRIQM: Hut2649 ::::::::::::::MI:::L::::A::T:::I::::D::HPD:T::R:A:RTD:LDFQQE Hbo3641 ::::R:::::::::::::EL:::G:E:::::I::::D:TRR:::ASR:VTD:Q:S:::S: rrnAC3062 ::::G::::::::::::::M::::FG:::::I::::D:T::A:::TS:I:G::LP::Q:T Hmu2777 ::::G:::::::::V:::AM::::F::::A:I::::D:T::A:::T:IV:A::IPD:Q:: Hut1876 ::::P:::::I:::::::::::::P:A:QT::R::TD:ASKT:::::::E:D::T:IQTL VNG0223 ::::P:::::L:::V:SAA:::::AA::::::A:::S:::R::T:D::::D::::::::A hla2711 ::A:P:::::L:::TI::A::::GDE::V:::R:::::VE:A:T::R::::DA:AG::E: HVO_0639 ::::T:::::V:::V::SA:::::L:::V:::H:::::SD::::::R:::RDA:A:I::A Hbo0889 ::::P:::::I:::V:::::::::S:::V:::R::V::E:R::::GS::SR:E:MDV:L: Hut0078 ::::::::::V:::AI:AAM::::L:::V:::R::::::E::::::T:::A:S:T:::Q: rrnAC1698 ::::::::::V:::LA:::L::::GE::V:::R:::::TT:::T::P:::A:S:KE::S: Hmu0612 ::::::::::V:::LA::::::::E:::F:::Q:::::VE::::::T::S::D:DE::AL consensus PEDVRVDDDLREYMVDLARATREDRRVDVGVSPRGTQRLFEAARARAVIAGREYVTPDDV #oth 3.512146622613462413..6272332.1....2..32.33.17.325..3122.3.1 HQ2259A ::Y:SMRLNV:::LT:I::Q::K:D::E:::::::I::FY:::::Y::::::S::::::: hla0148 ::SI::E:GV:Q:L::V:::::T:E::NT::::::I::F::VV:TH:ALM::S:A::::: rrnAC0952 A::I:::TKV:R:I::::::::::D:TEI::::::V::V:::V::S::::::R:S::::: Hmu1757 A:::S:RVPV:R:I::I::E::A:E:SE:::::::V::V::::::S::L:::D::V:::: Hut2590 ::T:S:EG::::F:L::T:E::SHHHIRT::::::::::L::S::F:::E::D::V:::: NP4650A ::RITM:SAI:::L:T:::E::T:::::::I::::I::Y::::::K:A:E::D::A:::: Hut2649 ::TIT:E:PV:D:IA::C::::T:G::E:::::::V:::::::::::::D:::F:V:::: Hbo3641 ::H::::EK::D:I:::G::::::A::::::::::I:::::::::::::R::D:AV:::: rrnAC3062 V:S:T::GT::D:V:E:G::::::D::::::::::I::::::T::A::LD::D:AV:::: Hmu2777 A:T:T::GK::D:V:E:G::::A:E::::::::::I:::::::::::::E::D::V:E:: Hut1876 ::::T:T:::IA::T:IVG:::DQPQIR:::::::::::L:::::::::E:::::::G:: VNG0223 S:::::GS:::::::AV::::::HP::E::::::::::::::::::::V::::::V:A:: hla2711 ::R:::::::LK::ASI::::::::::::::::::::::::T:::A::V::::F:::::: HVO_0639 ::S:::E:::L:::AK:::E::T::::RI:::::::::::::T::::::E:::F:::::: Hbo0889 :::::::E::LH::A:I::T::N::::::::::::::::L::S:::::LS:::F:::::: Hut0078 ::TI::E:::L:::AAVT:::::H:H:E:::::::::::::I:::::T:S:::::::::: rrnAC1698 ::T:T:::::LQ::A::V::::D:Y:::::::::::::::::T::M:T:::::::A:::I Hmu0612 ::SIT:E::VLR:VSNV::::::H:H::::::::::::::::V::::L:R:::F:::::: consensus KRVAPPVLAHRLVLTPDARVEGVDKADVVDDVLDRVPVPTVSA----------------- #oth 344274234..2.1132.51542669523852134252.356886454332222221212 HQ2259A :TI:SA:IT::::::SE:TIRDIKPKA:THS:::A:D::AAQGMK::::::::::::::: hla0148 :AM:::A:S::I:V::::::S::STTEI:::I:SEI:M:QLR:::::::::::::::::: rrnAC0952 ::L:NATMS::::::TE:TI::TE::::IQAA::A:D::A::PNAPDDTPEPTTTGGSER Hmu1757 ::L:VATM:::V::STN:T:::TEA::::R:A::::E::A::PDAPDSDAGADESA:AES Hut2590 T:M:E:::::::::::E:T:QEIE:REL:REIVEDT:::::Q:DATA::::::::::::: NP4650A :QI:E::MQ::I:::T::QID:ISG::::Y:::E::ET::PQK::::::::::::::::: Hut2649 R:I:::::::::::::E:S::::SRRSI:ES:::::S::AMEEPPAEQ:::::::::::: Hbo3641 :AA::S:FR::::::S::::R:::PL::::E:::S::::P:ASARQND:::::::::::: rrnAC3062 :T:VEEAF:::::::A::G:R:::P:T:::::::::E::A::P::::::::::::::::: Hmu2777 Q::VRD:F:::::::A::S:RE::PDE::R:::::IE::A::PT:::::::::::::::: Hut1876 :TI::D::::::::::::T::N:::R::LV::::SI::::::DVDAPAPG:::::::::: VNG0223 :GL:GS::::::::::::A::N:A:GGI:EG:::E::::::D:A:::::::::::::::: hla2711 ::::E:A:::::::::::A:NDT::Q::IA:::::IA::::D:AEA:::::::::::::: HVO_0639 ::::QS:::::::::::::::D:R:S:::::::G::T:::LE-::::::::::::::::: Hbo0889 :::S:A::::::::::::Q:ND:A:::::S:::E::E:::IE-::::::::::::::::: Hut0078 ::::R:A:::::::::::::DE:P:PS:I:RI::DI::::I--::::::::::::::::: rrnAC1698 ::::Q::::::::::::::::Q:::GT:IQS:::E::::::--::::::::::::::::: Hmu0612 :A::Q::::::V::::E::::N:AE:A::ES:::D::::::ARQ:::::::::::::::: consensus ------------------------------------------------------------ #oth 222221211222222222122212222111111122222212221122222221122111 HQ2259A :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: hla0148 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: rrnAC0952 ADSPSEATPDGDSSGQRPERSAGEAAENEATQLDGDDGQPTDSAGDTPSRSGEDDIGHGQ Hmu1757 PEGSAETTPATEQATNGHEEPSGDVST::::::DAPAPDSTTTDGDAEPDGSDDDLF::: Hut2590 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP4650A :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: Hut2649 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: Hbo3641 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: rrnAC3062 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: Hmu2777 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: Hut1876 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: VNG0223 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: hla2711 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: HVO_0639 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: Hbo0889 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: Hut0078 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: rrnAC1698 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: Hmu0612 ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::