|
Pairwise sequence scores | ||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Consensus score | 1511 | HQ1377A | hla0166 | HVO_0441 | Hbo1066 | VNG2080 | Hmu2688 | NP0092A | Hut2469 | rrnAC2800 | VNG1327 | HQ2457A | NP4032A | rrnAC1117 | Hmu1316 | Hut0539 | HVO_2917 | Hbo2696 |
1022 | HQ1377A | 1620 | 1012 | 977 | 1071 | 925 | 973 | 1046 | 1013 | 1011 | 466 | 506 | 573 | 528 | 459 | 516 | 504 | 520 |
964 | hla0166 | 1012 | 1639 | 1048 | 1124 | 901 | 1000 | 948 | 958 | 1014 | 494 | 454 | 518 | 437 | 435 | 456 | 427 | 476 |
1071 | HVO_0441 | 977 | 1048 | 1595 | 1192 | 1005 | 1029 | 1101 | 1021 | 1039 | 503 | 465 | 635 | 511 | 432 | 563 | 503 | 508 |
1104 | Hbo1066 | 1071 | 1124 | 1192 | 1577 | 993 | 1072 | 1077 | 1044 | 1068 | 544 | 490 | 587 | 550 | 495 | 564 | 502 | 536 |
1047 | VNG2080 | 925 | 901 | 1005 | 993 | 1570 | 1125 | 1028 | 1035 | 1124 | 505 | 506 | 613 | 569 | 530 | 534 | 467 | 535 |
1152 | Hmu2688 | 973 | 1000 | 1029 | 1072 | 1125 | 1553 | 1087 | 1100 | 1239 | 562 | 537 | 672 | 590 | 540 | 598 | 490 | 607 |
1117 | NP0092A | 1046 | 948 | 1101 | 1077 | 1028 | 1087 | 1582 | 1221 | 1171 | 556 | 497 | 671 | 577 | 509 | 621 | 572 | 506 |
1151 | Hut2469 | 1013 | 958 | 1021 | 1044 | 1035 | 1100 | 1221 | 1542 | 1230 | 527 | 522 | 591 | 550 | 497 | 638 | 538 | 545 |
1186 | rrnAC2800 | 1011 | 1014 | 1039 | 1068 | 1124 | 1239 | 1171 | 1230 | 1783 | 547 | 548 | 599 | 587 | 547 | 582 | 529 | 547 |
770 | VNG1327 | 466 | 494 | 503 | 544 | 505 | 562 | 556 | 527 | 547 | 1468 | 796 | 747 | 792 | 792 | 828 | 773 | 832 |
719 | HQ2457A | 506 | 454 | 465 | 490 | 506 | 537 | 497 | 522 | 548 | 796 | 1463 | 789 | 841 | 821 | 802 | 859 | 936 |
838 | NP4032A | 573 | 518 | 635 | 587 | 613 | 672 | 671 | 591 | 599 | 747 | 789 | 1501 | 862 | 851 | 892 | 853 | 847 |
786 | rrnAC1117 | 528 | 437 | 511 | 550 | 569 | 590 | 577 | 550 | 587 | 792 | 841 | 862 | 1464 | 989 | 976 | 819 | 985 |
725 | Hmu1316 | 459 | 435 | 432 | 495 | 530 | 540 | 509 | 497 | 547 | 792 | 821 | 851 | 989 | 1445 | 990 | 856 | 942 |
783 | Hut0539 | 516 | 456 | 563 | 564 | 534 | 598 | 621 | 638 | 582 | 828 | 802 | 892 | 976 | 990 | 1610 | 847 | 894 |
740 | HVO_2917 | 504 | 427 | 503 | 502 | 467 | 490 | 572 | 538 | 529 | 773 | 859 | 853 | 819 | 856 | 847 | 1474 | 985 |
778 | Hbo2696 | 520 | 476 | 508 | 536 | 535 | 607 | 506 | 545 | 547 | 832 | 936 | 847 | 985 | 942 | 894 | 985 | 1476 |
251 symbols consensus -----------------------------MMVRNVTADAEAFTCNAFLVTGERTVLVDAG #oth 11111111111222222222222222223362662264446.12.11.15.144211.2. HQ1377A ::::::::::::::::::::::::::::MTD:HAI:::::V:::::Y::S:D:P::I::: hla0166 ::::::::::::::::::::::::::::::EPIT::::::E:::::Y::S::APT::::: HVO_0441 ::::::::::::::::::::::::::::::E:IP::::::T:::::Y::L:::::::::: Hbo1066 ::::::::::::::::::::::::::::::EIVT::DG::Q:::::Y::L:::N:::::: VNG2080 ::::::::::::::::::::::::::::::S::V::SG:AS::::::::V:DT:T::::: Hmu2688 ::::::::::::::::::::::::::::::A:YT::DG::T:::::Y:::::Q:T::::: NP0092A ::::::::::::::::::::::::::::::D:YH:::N::T:::::Y::D:D:::::::: Hut2469 ::::::::::::::::::::::::::::::D:H:::::::T::A:VY:A::D:PT::::: rrnAC2800 MFFGLTLGTAVATGGRDSTLKRAAPQASC:D:H::::E::T:::::Y:A:::Q:T::::: VNG1327 :::::::::::::::::::::::::::::-:PT:LS:GVQ:::S:V:::::D:D:V:::: HQ2457A :::::::::::::::::::::::::::::-:IQ::AS:VQ::SS:V::::::INA:I::: NP4032A ::::::::::::::::::::::::::::::T:::IARGIRS::S:::::D::::::::T: rrnAC1117 :::::::::::::::::::::::::::::-:I::LARGQQ:::S:V:::::D::::::V: Hmu1316 :::::::::::::::::::::::::::::-:I::LAPSSGV::S:V:::E::T:T:::V: Hut0539 ::::::::::VIVLDHRPERLKRLDALVTC:IH::A:::GG::S:V:::::D:Q::::V: HVO_2917 :::::::::::::::::::::::::::::-VI::L:G:IR:::S:V:::D::T:A:::T: Hbo2696 :::::::::::::::::::::::::::::-:ITSLAH:VQ:::S:V:::::DT:A:::V: consensus AMFGVVDVVREHTDE-----LDAVVLTHQHPDHVGNLDAVLDAFDAE-LYAYD-DHPRRD #oth 24612347143443611111213122..2.7..1542322312..341241233454732 HQ1377A ::P:A::IIDNIV:D::::::E::Y:::::T:::AE::SI::K:::::::::S:::::Q: hla0166 T:P::D::IADAL::AGVDG::R:::::::H::::Q::::::R:::T::::NA:A::::: HVO_0441 T:S::E:::A::::D::::::::::V::::S::::E:G::VER::PD:V:::A::::L:T Hbo1066 T:P::ET::AD:::::::::::::::::::T::I:E::::::R:::D:::::G::::::: VNG2080 :YD::A:EI:A:V:A:::::::Q::V::::T:::QQ::::V::::GPDV:::A::::L:T Hmu2688 :YV::::AI:D:V:::::::::R:::::::G:::AE:AS:::::::::::::G::::::: NP0092A ::D::::::D:Y::M:::::::::::::::S::IAE::::::::::P::::::::::Q:T Hut2469 ::D:::::I::Y::::::::::S:::::::G:::AQ:::::::::::::::NA::::::T rrnAC2800 ::R:::::I:::A:A:::::::::::::::G:::QR::T:::::::P:::::G:S::::: VNG1327 :NYD::AA::D:GVT:::::P::::I::P::::::::::LV::::PT:VLGF::GVADA: HQ2457A :N:D::SQIQ:::EQ:::::I:RLY:::T:V:::K:IPS:R::::V::TWG::TT:DIV: NP4032A ND:DA:SN:DAA:GD:::::::::::::T:::::::VP::VE:::V::VWG::G::DLV: rrnAC1117 NE:D::ST:E::V:D:::::I:::AV::T:Y:::E:::S:V::::VP:V:G::T:QDGVE Hmu1316 ND:D::SE::AVV:::::::I:Q:::::T:R::::T::::RE::::P:VCG::GGFDGV: Hut0539 ND:D::AR::::VED:::::::::::::T:::::::::::TE::::P:VVG::P:ASGVE HVO_2917 :N:DM:PT:::V::S:::::::::Y:::T::::I::V:::RE:::VQ:TWG::TGNLAV: Hbo2696 :N:D::SR::D:V:::::::::R:YI::T:R:::D:VA::RE:::V::TWGF:P:QSEV: consensus HALADGDTVQIGDEDYEVVHTPGHADDHVCLVSETA--LFSGDLVV--DGAFDNGSFGRT #oth 7424.326373.13735213....251.22123684333111.22122111.23.1.... HQ1377A ST:E:T:::E::::PF:::Y:::::S:::AF:GN:R::V::::V::YN:::::D:::::: hla0166 V:IG:::EILV:::PC:::E:::::A::IS::GDDR::VY:::V::YN:::::D:::::: HVO_0441 :E:G:::H:EM:::SF:::Y:::::::::S:::GRS:::::::VF:YN:::::D:::::: Hbo1066 E::E:::VL:M:E:TF:::Y:::::S::IS::::KR::I::::V::YN:::::::::::: VNG2080 ::::::::::V::QAAD::F:::::P:::S::T:::::::A::V::HD:::::D:::::: Hmu2688 :::::::::TV::H:CT::Y:::::::::S:::::::::::::V::HD:::::D:::::: NP0092A NE:D:::QIFM:::PFD::Y:::::::::A:::::T:::::::V::HD:::::Y:::::: Hut2469 NG:D::::I:M:::TF:::Y:::::::::S:::::T:::::::T::HD::::EG:::::: rrnAC2800 ::::::::LTV:::EC:::Y:::::::::S::::S::::::::V::HD:::::D:::::: VNG1327 R::::::EIRL::D::V:L:::::EPH::::Y:PA:GV:::A:::-::---:A::::::: HQ2457A ::IQ:EESIP::::R:ISL:::::KP::L:FYAANIGIC:A:::I-::---:A::::::: NP4032A :EVG:::::D:::HP:::L:::::KE:::::YAP::AT::A::::-::---:A::G:::: rrnAC1117 Y:I::DE:I:L::H::RAL:::::KN::L:FY:DD:GV::A::::-::---:A::::::: Hmu1316 R:I::ET:R:::::E:VAL:::::KN::L::YAAE:GV::A::::-::---:A::::::: Hut0539 Q:ID:::::DM::HT:TAL:::::K::::::YAAGSGI::A::::-::---:E::G:::: HVO_2917 RRID::ER:::::DVF:A::::::K:::L:FF:RGSGVC:A::::-::---:A::G:::: Hbo2696 ::I:::E::::::D:::AL:::::KN::L:FY:RD:SV::A::::-::---:A::::::: consensus DLPGQSRERLIESIRRLLDRV-PETLEEMYAGHGPSFTG---D-----VREVIERALERA #oth .46212.55.15.145224441355254314...4437611143231216753131662. HQ1377A :MT::::::::T:LQ:::E:L::Q:VN:L:::::DVYY:SPG:DTIDS:KTI:::::M:: hla0166 :MA:::::V::::LHT::::L::D:ASA::P:::DVYRA:::SDGPDT::::::::T::: HVO_0441 :M:::::::::S:LHT::::L::S:V:AL:::::DP:EN:::EAGGDT::DAL:::I::: Hbo1066 :MS:::::::V::L:T::::I::::V::L:::::DV:RS:::ESGGDS:QD::::::S:: VNG2080 :M:::::::::G:L:E::A:M::DSVS:F:::::GV:E::::::::::::A:A::::D:: Hmu2688 :A:D:::D::V::::A::::L:::SVTA::::::SV:E::::::::::::A:V::G:::: NP0092A :M::::::::::::QT::::M:G:DV:H::::::DT:H::::::::::::D:V:T::Q:: Hut2469 :N:::::::::::::DI:::M::::V:H::S:::GA:H:::::::::::::IV:T::::: rrnAC2800 :R::::::::::::E:I:::M::AGV:H::S:::GV:H::::::::::::::V::::::: VNG1327 ::D:GD::T:V:::D::A:T:AG:E:TAL:P:::::V:S:::::::::PAAD:DL:ARS: HQ2457A ::E:GN:KT::Q::D:IAGT::TDN:TAI:S::::AI:T:::::::::PK:N:DM:AQA: NP4032A :::EGD:DQ:::::EY:::A::D:S:ST::V::::TVDA:::::::::P:HH::L:HGA: rrnAC1117 ::NEGN:DL:VD::E:V:SVT:D:D:Q::HT:::::I:D:::A:::::PYQD::L::QA: Hmu1316 ::EEGD:SL:V:::D:V::L::D:D:A::H::::::V:D:::::::::PYGN::L:RRA: Hut0539 ::EEGD:SL:V:::::V::T::DAD:AV:HT:::R:IQT:::::::::PYRN::L:AQA: HVO_2917 :::EGD:GA:V:::D::REV::GGD:T:LHT:::::VAT:::R:::::PS:DL:L:ARA: Hbo2696 ::EEGD:PT::::LD:VRETI:D:::S::HT:::::V:E:::R:::::PFDDV:L:GRA: consensus ERR-PKY---- #oth 34232111341 HQ1377A :::KL::PNN: hla0166 :::E:::PDE: HVO_0441 :::E:::PEA: Hbo1066 :::E:::PDD: VNG2080 Q::D:::PDDQ Hmu2688 :::E:::PEE: NP0092A :K:E:::PEE: Hut2469 :::E:::::D: rrnAC2800 :::E:::PDD: VNG1327 RFQ:---:::: HQ2457A RM-:---:::: NP4032A RM::---:::: rrnAC1117 KF-:---:::: Hmu1316 RF-:---:::: Hut0539 RF-:---:::: HVO_2917 RT::---:::: Hbo2696 RM::---::::