|
Pairwise sequence scores | |||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Consensus score | 3025 | HQ2288A | rrnAC2076 | Hmu0047 | Hbo0062 | Hbo0183 | Hbo3418 | HVO_1365 | Hut0945 | rrnB0286 | VNG5062 | VNG5235 | VNG6060 | VNG6466 | Hmu3298 | NP0980A | hla0858 |
1314 | HQ2288A | 2860 | 1355 | 1314 | 1325 | 1248 | 1179 | 1258 | 1295 | 1236 | 1193 | 1193 | 1193 | 1193 | 1212 | 1216 | 1244 |
1592 | rrnAC2076 | 1355 | 2967 | 1803 | 1443 | 1432 | 1366 | 1325 | 1513 | 1488 | 1502 | 1502 | 1502 | 1502 | 1530 | 1425 | 1435 |
1449 | Hmu0047 | 1314 | 1803 | 2920 | 1407 | 1315 | 1337 | 1276 | 1403 | 1414 | 1329 | 1329 | 1329 | 1329 | 1384 | 1357 | 1388 |
1595 | Hbo0062 | 1325 | 1443 | 1407 | 2910 | 1483 | 1428 | 1447 | 1562 | 1499 | 1492 | 1492 | 1492 | 1492 | 1529 | 1485 | 1541 |
1764 | Hbo0183 | 1248 | 1432 | 1315 | 1483 | 2950 | 1600 | 1765 | 1691 | 1712 | 1652 | 1652 | 1652 | 1652 | 1710 | 1674 | 1705 |
1835 | Hbo3418 | 1179 | 1366 | 1337 | 1428 | 1600 | 2960 | 1807 | 1649 | 1802 | 1768 | 1768 | 1768 | 1768 | 1787 | 1720 | 1742 |
1958 | HVO_1365 | 1258 | 1325 | 1276 | 1447 | 1765 | 1807 | 2998 | 1765 | 1880 | 1868 | 1868 | 1868 | 1868 | 1928 | 1780 | 1900 |
2337 | Hut0945 | 1295 | 1513 | 1403 | 1562 | 1691 | 1649 | 1765 | 3009 | 2227 | 2241 | 2241 | 2241 | 2241 | 2219 | 2111 | 2180 |
2662 | rrnB0286 | 1236 | 1488 | 1414 | 1499 | 1712 | 1802 | 1880 | 2227 | 3146 | 2615 | 2615 | 2615 | 2615 | 2685 | 2380 | 2446 |
2854 | VNG5062 | 1193 | 1502 | 1329 | 1492 | 1652 | 1768 | 1868 | 2241 | 2615 | 3043 | 3043 | 3043 | 3043 | 2692 | 2409 | 2425 |
2854 | VNG5235 | 1193 | 1502 | 1329 | 1492 | 1652 | 1768 | 1868 | 2241 | 2615 | 3043 | 3043 | 3043 | 3043 | 2692 | 2409 | 2425 |
2854 | VNG6060 | 1193 | 1502 | 1329 | 1492 | 1652 | 1768 | 1868 | 2241 | 2615 | 3043 | 3043 | 3043 | 3043 | 2692 | 2409 | 2425 |
2854 | VNG6466 | 1193 | 1502 | 1329 | 1492 | 1652 | 1768 | 1868 | 2241 | 2615 | 3043 | 3043 | 3043 | 3043 | 2692 | 2409 | 2425 |
2714 | Hmu3298 | 1212 | 1530 | 1384 | 1529 | 1710 | 1787 | 1928 | 2219 | 2685 | 2692 | 2692 | 2692 | 2692 | 3268 | 2312 | 2398 |
2471 | NP0980A | 1216 | 1425 | 1357 | 1485 | 1674 | 1720 | 1780 | 2111 | 2380 | 2409 | 2409 | 2409 | 2409 | 2312 | 3069 | 2485 |
2522 | hla0858 | 1244 | 1435 | 1388 | 1541 | 1705 | 1742 | 1900 | 2180 | 2446 | 2425 | 2425 | 2425 | 2425 | 2398 | 2485 | 3074 |
441 symbols consensus ----MNADDFPTPDADVESITPETLKDRIDAGESVTLLDARMRSDYEEWHIDGENVTSIN #oth 122137663423346545544144.452134116331..4.5653315.12313212533 HQ2288A ::::-----------MDTLLS:D::AT:L:HD::I::::I:N::EIDN:R:EAASA:RVE rrnAC2076 ::::-M:E:Y:D:PT:PP:LSAA::QAKL::::::R:::V:D:GE::::RLR::S::ATQ Hmu0047 ::::-MSESY:D:PVEPAT::::::AG:LAD::R:R:::V:D:DE::R:::A:PS::ATQ Hbo0062 ::::---------------M:::E:H::LER::::::::V:N:EE:DA:::::DS::TTL Hbo0183 :::::SLP:L:DL::::PE::A::::S:L:D::ELM:::T:PPAKH:::R::ADS::YV: Hbo3418 ::::-MEGTQSETENS:::::::Q:NAQ:SD:DGAFI::V:SADNFD::::E:P::E:L: HVO_1365 :::::TVP:L:EL:V::PV:E::A::A:::E::AL:I::N:VP:EH:D:R::::::SHV: Hut0945 :::::ADV:::::AETA:T:::KA::S::::::A::I::V::G:E::K:::::DS:ET:: rrnB0286 :::::::E:::::::::::V::::::S:::D:::::I:::::SG::::::::::::E::: VNG5062 :::::::::::::::::::VD::S:::::::::D::::::::T::::::::::::::::: VNG5235 :::::::::::::::::::VD::S:::::::::D::::::::T::::::::::::::::: VNG6060 :::::::::::::::::::VD::S:::::::::D::::::::T::::::::::::::::: VNG6466 :::::::::::::::::::VD::S:::::::::D::::::::T::::::::::::::::: Hmu3298 :VYD:::E:::::::::A:VA:::::::::D:::::::::::STE::K::V::::::::: NP0980A ::MDPE:M:::::::T:::T::RE::E::::::P::::::::E::::::R:::DT:E::: hla0858 MYMDADEM::::::S::D::E::S::A:::D:::::::::::S::::::R:::P::E::: consensus VPYFEFLDDDIDEDV-----LAQIPDD--REVTVLCAKGGASEYVAGTLAERGYDVDHLE #oth 51164315343533322211536224211242113.11.22.231.26164613215312 HQ2288A :::MK::AAGASG:P:::::ASLL:A:ATEP:VAV::R:E::DE::TM:R:T:I:AVN:A rrnAC2076 L:FTK::QAKVTGE:DSL::V:EVAGT::GPI::I:GR:E::AF:::L:T:H:VEAQN:S Hmu0047 HSFAKA:QAQVRGS:DEL::A::VAGE::GPI::V::R:E::A::::L:T:A:V:AHN:A Hbo0062 :::SK:MTAEVQGT:EETARK:GLDP:::EL:VAV:GR:E::D:::EL:RDV::NAEN:: Hbo0183 R::DNY::GELTDEL:::::V:GL:::::E:FV:F::::HT::F:::K:RLA:::AVA:: Hbo3418 Y::::L:-:G:PD:L::::::::L:E::::TI::::::::S::MI:ESIQ:E:F::N::: HVO_1365 I:::::::EEL::SL:::::FEEL:E:::E:FV::::::HS::::::L:IQE:::AVA:: Hut0945 :::Y:::::::SG:::::::FDS:::::::T:::V::::E::::I::V:KA::::AQSVA rrnB0286 ::::H::E:EL:A:I:::::I:DV::::::::::::::::::::::::::D:::::H::: VNG5062 :::::::E:::::::::::::D:::::::::::::::::::::F::::::::D::::::: VNG5235 :::::::E:::::::::::::D:::::::::::::::::::::F::::::::D::::::: VNG6060 :::::::E:::::::::::::D:::::::::::::::::::::F::::::::D::::::: VNG6466 :::::::E:::::::::::::D:::::::::::::::::::::F::::::::D::::::: Hmu3298 :::::::::E:::S:::::::DR::::::::::::::::::::::::::V:Q:::::::: NP0980A I:::::::E:::D:::::::::SV:::::EH::::::::::::::::A::D::::::::A hla0858 ::::Q:::EE::D:::::::::R::::::EH::::::::::::::::A::D::::::::: consensus DGMNGWARIYEAVEVEGYDGAGTLLQYQRPSSGCLGYLLYDDGEAAVIDPLRAFTDRYLA #oth 3..4..142.345236621541226..2..11...1.3334222.111....2.2.1.43 HQ2288A G::E::GQV:CTTNCAT--ES:I:K::R:::::::A::FVTGES:L::::::::A:::V: rrnAC2076 :::E::::L:::R:ISC--D:A:V:::R:::::::::MIIS::S:::V::::::::::S: Hmu0047 G::D::::V:::H:LDA--DEA:IV:::::A::::::QIVA::V:::V::::::A:::A: Hbo0062 :::R:::HV:VSET:PT-:ADA:VF::R:::::::A:M:VSS::::::::::Q:V:::A: Hbo0183 :::E::::L::YT:LDT-:FD:IVG::Y:::::::A::IVS:D::::V::::::::::VT Hbo3418 R::K:::::::YD:LDV-:V:A:VA::R:::::::A::VAS:::::::::::::::E:VQ HVO_1365 R::::::S:::YT:L:T-::DALVA::::::::::A::VV:GD::::V::::Y:A:E:V: Hut0945 E::::::E:::::::::H::P::V::::::::::::::VV:GD::::::::::::::::D rrnB0286 :::::::::::T:::TD:::::::::::::::::::::V:::::::I:::::::A:::FD VNG5062 ::::::::::D:::::::::::::::::::::::::::::::::::I::::::::::::D VNG5235 ::::::::::D:::::::::::::::::::::::::::::::::::I::::::::::::D VNG6060 ::::::::::D:::::::::::::::::::::::::::::::::::I::::::::::::D VNG6466 ::::::::::D:::::::::::::::::::::::::::::::::::I::::::::::::D Hmu3298 :::::::S:::::::QR::::::::::::::T:::::::::::::::::::::::::::: NP0980A :::::::S:::PH::T:::::::::::::::::::::F::H::::::::::::::::::D hla0858 :::::::S:::TH::TD:::P:::I::::::::::::::::G::::IV:::::::::::: consensus DA---------------DELGVDLQYALDTHVHADHISGVRNLAEE-GVEGVIPAAAVDR #oth ..11111111111111154512315313...1....1..2.714343133344134.42. HQ2288A :::::::::::::::::K:M:AE:VAVV:::::::::::L:TVTAR::ATPYMSSK:I:: rrnAC2076 :::::::::::::::::ADRDASITH:I:::::::::::::R::V:T:A:PILSER::A: Hmu0047 :::::::::::::::::TR:DATIE:VI::::::::V::L:SV:AAT:G:ALV::R:HE: Hbo0062 :::::::::::::::::R:Y:A:IVSVI::::::::V::::E::DAVDATP:Y::::EA: Hbo0183 :::::::::::::::::A:Y:ASIE:VI:::::::::::L:E::A:T:AKT:LS:T:A:: Hbo3418 :::::::::::::::::RA::T::T::::::::::::::I:T:S:QTDATA:L::P::A: HVO_1365 :::::::::::::::::KA::AE:T::V:::I:::::::::T:V:DH::A::::E::EA: Hut0945 :::::::::::::::::EDHDA::V:::::::::::V::I:A::DA::::A:L::::I:: rrnB0286 ::::::::::::::::::::::::K::::::I:::::::::G:DAA:::::::::::::: VNG5062 ::::::::::::::::::N::::::::::::::::::::::::::::DI:::::E::::: VNG5235 ::::::::::::::::::N::::::::::::::::::::::::::::DI:::::E::::: VNG6060 ::::::::::::::::::N::::::::::::::::::::::::::::DI:::::E::::: VNG6466 ::::::::::::::::::N::::::::::::::::::::::::::::DI:::::E::::: Hmu3298 ::AELRSASPASQARQDEDF:::::::::::::::::::::A:DD:::::::::E::::: NP0980A ::::::::::::::::::::::E:R::F::::::::V::L:D::A:::::A:L:GP:A:: hla0858 :::::::::::::::::E::::E:T::F:::::::::::L::::D:::::AML::::A:: consensus GVTYADD----------------VTTAADGDTFTVGDATIEAVHTPGHTTGMTSYLVDDS #oth .2543542111112111111112644432123372.323243342....11113342134 HQ2288A :::FD--:::::::::::::::::ESL:P:TA::I::TA:DVLAS::::::GI:LAI:GY rrnAC2076 ::-DD--::::::::::::::::::AL:ADE:LR::S::L:PRPL::::::::GFT:G:V Hmu0047 ::VGT--:::::::::::::::::G:L:::E:RSL:ET:LR::AL::::::::GVA:G:V Hbo0062 :LVADSA::::::::::::::::TKLVS:::EIH:::V:LT::::::::SE::AFQI::: Hbo0183 ::A:VV:::::::::::::::::-VLVE::::I:L:::D:KVI::::::S::::L::G:V Hbo3418 ::E:DVP::::::::::::::::FEQV:::::LS::NVD::VI::::::S:::A:K:G:V HVO_1365 ::D:DTP::::::::::::::::YE:I:::E:L::::TD:::I::::::::::T:A::NV Hut0945 ::ED:::::::::::::::::::L:A:E:::V::I::VE:::I::::::::::::::G:A rrnB0286 :::::AEQSSASPVSQARQDADDL:::E:::::E:::V:::T:A:::::::::::::::: VNG5062 :I:::::::::::::::::::::M:::::::::D:::::::::Y:::::::::::::::: VNG5235 :I:::::::::::::::::::::M:::::::::D:::::::::Y:::::::::::::::: VNG6060 :I:::::::::::::::::::::M:::::::::D:::::::::Y:::::::::::::::: VNG6466 :I:::::::::::::::::::::M:::::::::D:::::::::Y:::::::::::::::: Hmu3298 :::::A:GSSASPASQARQDADAL:::::::::Q::::::::::::::::::::::I::: NP0980A ::::T:E::::::::::::::::::LTQ:::::P::E::::T:F::::::::::::::EG hla0858 :::::::::::::::::::::::::LVE:::E:::::::V:T:F::::::::::::LG:: consensus LLATGDGLFIESVARPDLEEGDDGAPDAARMLYESLQERVLTLPDDTLVAGAHFSDAAEP #oth 2213..21.311.......32322.532.25.161323244423.3231121.4323163 HQ2288A :V-C::T::LDG:::::::A-:NN:QAF:YD:HRTVT::FAD:::::VI:PG:YH:G:PQ rrnAC2076 ::-A::SV:LD::::::::A:A:::R:L::D:HRT:TD:LAA:::E::::PG:Y:ESTV: Hmu0047 ::-:::S::L:::::::::AS::A:A-F::E::AT:T::LDAFD:E::I:PG:VGERTVR Hbo0062 CF-S:::::LD::::::::H::E::E::::R:::TF:SVYG:FD::VR::P::CGE:T:R Hbo0183 ::-::::::TD::::::::A:SE::T::::T:::TIH::I:P:S:G:RI:P::TAS:TAT Hbo3418 :F-::::::T:::::::::D-PEA:T::::T::T::T:K::P:::E:V::P:::::::T: HVO_1365 :F-::::::::::::::::D::E::::::G:::G:::::::SHD::AI::S:::::::I: Hut0945 :::::::::V:::::::::A:::::E::::Q:::T::D:I:::A::V:I::G:T:::::: rrnB0286 ::::::::::::::::::::::E:::::::::::::::::::::::::IG:::::::::: VNG5062 :::::::::::::::::::::::::::::::::::::::::::::::::G::::::::D: VNG5235 :::::::::::::::::::::::::::::::::::::::::::::::::G::::::::D: VNG6060 :::::::::::::::::::::::::::::::::::::::::::::::::G::::::::D: VNG6466 :::::::::::::::::::::::::::::::::::::::::::::::::G::::::::D: Hmu3298 ::::::::::::::::::::::::::::::T:::::::::::::::::IG:::::::::: NP0980A F:::::::::::::::::::::E:::::::T::Q::::::R::::E::IG::::::::A: hla0858 ::::::::::::::::::::::::::E::::::D:::T:::S:D:NV::G:::::::::: consensus AADGTYTAPLGELRDEMDALTMDEDAFVELVLSDMPPRPANYEDIIATNLGQNAVDDEEA #oth 24.1111.41.5.4341421341334.114233131.....3131123...45653.24. HQ2288A SS::S:::R::D::EQLWPF:S:S:T:::RAV::LG:::::D:R::RI:::REQIN:Q:: rrnAC2076 SD:::F:::::G:::QLPGF:::RE::::Y:CD:I::::::F:RV::I:::TETA::DT: Hmu0047 ND::S:A:T::Q::ERLW:FAV::AT:::R:TENV::::::A:A:V:A:::RRTPS:DD: Hbo0062 :V::::::R::T:::RLP::S:::AE:::Y::D::::::::::E::EM:::RSE:E:D:: Hbo0183 SV::::::S::::TAH:E::RY:R:S:::Y::A::::::::::E::E:::::TD:N:::: Hbo3418 ND:A::::E::T:TET::::A::::E:I:FIVA::::::::::E:::::::LESL:::K: HVO_1365 :D::S:::T::::KET:N::S:PK:E:::FI:::::::::::V:::E::::VQES::DR: Hut0945 :::::::::::D::A::E::S::::D::::I:A::::::::F:::::::::::WI::::: rrnB0286 :N:::::::I:Q:VE::::::::::D:::TI:A::::::::::::::::::::T:::::: VNG5062 :::::::::I:::V::::::::::Q:::D::::::::::::::::::::::::::::::: VNG5235 :::::::::I:::V::::::::::Q:::D::::::::::::::::::::::::::::::: VNG6060 :::::::::I:::V::::::::::Q:::D::::::::::::::::::::::::::::::: VNG6466 :::::::::I:::V::::::::::Q:::D::::::::::::::::::::::::::::::: Hmu3298 :D:::::::I:::VA:::::::::E:::D:I::::::::::::E::::::::::::::K: NP0980A :S::::::T::A:DSR::::S::::E::D:::::::::::::::::E:::::REI::::: hla0858 :::::::::I::::ER::::SA:::E:::T::A::::::::::::::::::::::::D:: consensus FTLELGPNNCAASQDSLAGD- #oth .11.1......1344423411 HQ2288A :E::I::::::VAA:-----: rrnAC2076 :E::::::::::APTDTV--: Hmu0047 :EW:::::::::TAE-----: Hbo0062 :E:::::::::V::AD----: Hbo0183 ::::::::::::ESTI----: Hbo3418 :E:::::::::::NGA:TN-: HVO_1365 :E:::::::::::NEA:TN-: Hut0945 ::::::::::::::::::::: rrnB0286 ::::::::::::::E:::::: VNG5062 ::::::::::::::::::::: VNG5235 ::::::::::::::::::::: VNG6060 ::::::::::::::::::::: VNG6466 ::::::::::::::::::::: Hmu3298 ::::::::::::::G:::D:: NP0980A :::::::::::::::A:T::: hla0858 :::::::::::::::A:TS:D