|
Pairwise sequence scores | |||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Consensus score | 2380 | VNG6351 | NP4822A | hla1771 | HQ1867A | HVO_1478 | Hbo0071 | NP1684A | hla0231 | HVO_0733 | HQ1227A | Hbo0801 | rrnAC0016 | Hmu1182 | NP5186A | VNG0254 | Hut1919 |
1968 | VNG6351 | 2379 | 1727 | 1913 | 1931 | 1915 | 1932 | 1818 | 1760 | 1769 | 1765 | 1748 | 1971 | 1961 | 1860 | 1894 | 1889 |
1901 | NP4822A | 1727 | 2431 | 1810 | 1798 | 1803 | 1798 | 1895 | 1863 | 1879 | 1880 | 1883 | 1842 | 1818 | 1822 | 1823 | 1817 |
2162 | hla1771 | 1913 | 1810 | 2374 | 2231 | 2224 | 2245 | 1981 | 1952 | 1920 | 1901 | 1919 | 2058 | 2065 | 1996 | 1981 | 2017 |
2157 | HQ1867A | 1931 | 1798 | 2231 | 2382 | 2244 | 2288 | 1947 | 1913 | 1928 | 1922 | 1926 | 2042 | 2033 | 2002 | 1996 | 2007 |
2155 | HVO_1478 | 1915 | 1803 | 2224 | 2244 | 2380 | 2278 | 1970 | 1901 | 1931 | 1906 | 1923 | 2019 | 2016 | 1968 | 2015 | 2032 |
2149 | Hbo0071 | 1932 | 1798 | 2245 | 2288 | 2278 | 2377 | 1966 | 1894 | 1915 | 1916 | 1930 | 2038 | 2036 | 1982 | 1992 | 2001 |
2075 | NP1684A | 1818 | 1895 | 1981 | 1947 | 1970 | 1966 | 2420 | 1932 | 1931 | 1922 | 1942 | 2065 | 2060 | 2084 | 1996 | 2043 |
2092 | hla0231 | 1760 | 1863 | 1952 | 1913 | 1901 | 1894 | 1932 | 2486 | 2171 | 2109 | 2176 | 1999 | 2009 | 2008 | 2052 | 2080 |
2077 | HVO_0733 | 1769 | 1879 | 1920 | 1928 | 1931 | 1915 | 1931 | 2171 | 2436 | 2182 | 2223 | 1968 | 1971 | 2020 | 2031 | 2028 |
2067 | HQ1227A | 1765 | 1880 | 1901 | 1922 | 1906 | 1916 | 1922 | 2109 | 2182 | 2462 | 2265 | 1952 | 1947 | 1980 | 2020 | 2010 |
2104 | Hbo0801 | 1748 | 1883 | 1919 | 1926 | 1923 | 1930 | 1942 | 2176 | 2223 | 2265 | 2453 | 1989 | 1998 | 2028 | 2068 | 2057 |
2181 | rrnAC0016 | 1971 | 1842 | 2058 | 2042 | 2019 | 2038 | 2065 | 1999 | 1968 | 1952 | 1989 | 2396 | 2239 | 2075 | 2043 | 2071 |
2179 | Hmu1182 | 1961 | 1818 | 2065 | 2033 | 2016 | 2036 | 2060 | 2009 | 1971 | 1947 | 1998 | 2239 | 2387 | 2056 | 2038 | 2084 |
2126 | NP5186A | 1860 | 1822 | 1996 | 2002 | 1968 | 1982 | 2084 | 2008 | 2020 | 1980 | 2028 | 2075 | 2056 | 2447 | 2133 | 2189 |
2151 | VNG0254 | 1894 | 1823 | 1981 | 1996 | 2015 | 1992 | 1996 | 2052 | 2031 | 2020 | 2068 | 2043 | 2038 | 2133 | 2417 | 2259 |
2167 | Hut1919 | 1889 | 1817 | 2017 | 2007 | 2032 | 2001 | 2043 | 2080 | 2028 | 2010 | 2057 | 2071 | 2084 | 2189 | 2259 | 2409 |
345 symbols consensus ----------MERPTRQRERER-------EREEETDEE--------ELDCPECDSDDIVT #oth 111111111114131.11353754322323735344461111224556732344355233 VNG6351 :::::::::::::A::E::K:QR:::::::QAQTN::A::::::::-QQ::::N:ANVI: NP4822A MVATVTSGSTNQ:TS:EAST:A::::::::KA::AAAT::::::AETVEPDAV:P::V:K hla1771 ::::::::::::::S:::QQ::::::::::T:R:S:::::::::::T:S::::::TE::: HQ1867A ::::::::::::::S:::Q::Q::::::::T:QTS::R::::::::-:T::::E:G:V:: HVO_1478 ::::::::::::::S:::Q::E::::::::ATAQE::Q::::::::-VN::::G::Q::: Hbo0071 ::::::::::::::S:::Q::Q::::::::V:QDS::R::::::::-IA::::E:TN:I: NP1684A :::::::::::PG:::::::ATEG::::::A:A::EA::::::::Q:TG:::::::SL:R hla0231 :::::::::::T::::::DHD:QRVRSEDAD:T:::A:GVEGADAG:::PEDF:PEELTR HVO_0733 :::::::::::K:::::::::HDRTRWGD:SQDDETS::::::::E:::LDNL:PEEV:R HQ1227A :::::::::::T:S::::::DSERTRWQG::::D:NTD::::EAVDDI:LDNV:DK:L:R Hbo0801 :::::::::::T::::::::DSDRTRWQG::::DAA:D::::::EDDI:IEDM:EE:L:R rrnAC0016 ::::::::::::::::::DS:QE:::::::::::SEST:::::::GQQT::::E:ES:SS Hmu1182 :::::::::::::::::::HDG:::::::TQ:Q::E:S:::::::::QT::::::TA:S: NP5186A :::::::::::T::::::::I:ETEG::::T:D:AED:::::::SA:TT::::S:T:::K VNG0254 :::::::::::T:S:::::::TAA:::::KQ:::E:S:::::::EGVRE::::G::NL:K Hut1919 :::::::::::T:S::::::::::::::::S:T::::Q::::::EGVEE::::G::SL:K consensus DAD--GELVCEDCGLVLEEEQIDRGPEWRAFNHSERQSKSRVGAPTTQTMHDKGLTTTID #oth 232133.211221.1121133..2.......111..12.......1.2....1....1.. VNG6351 :QS::-:R::::::::::DD:::H::::::::S:::DQ:::::::::K:::::::::Q:: NP4822A T:::::::IH:PT:::::D:H::::::::::T:::::::::::::::::::::::::Q:: hla1771 :::::Q:::::::::::D:RN::::::::::::::::::::::::I:E:::::::::::: HQ1867A ::::Q:::::N::::::D:R:::::::::::::::::::::::::I:E::::R::::::: HVO_1478 ::::Q:::::D::::::D:R:::::::::::::::::::::::::I:E::::R::::::: Hbo0071 ::::Q:::::D::::::D:R:::::::::::::::::::::::::I:E::::R::::::: NP1684A SG:GG:::::::::::I:::N::::::::::::::::::::::::::::::::::::Q:: hla0231 T:::::::IH:ET::IV::::::P:::::::::::::::::::::::K:::::::::::: HVO_0733 TG::::::IH:ET:III:::R::P:::::::::::::::::::::::::::::::::::: HQ1227A TG:::::IIH:PT:I:V::::::::::::::::::::::::::::::K:::::::::::: Hbo0801 TG::::::IH:PT:I:V::::::P:::::::::::::::::::::::::::::::::::: rrnAC0016 :GG:::::::::::::I:D:N::::::::::::::::::::::::::::::::::::Q:: Hmu1182 :GS:::::I:::::::I:D:N::::::::::::::::::::::::::::::::::::::: NP5186A :G::R:::::N:::::V::DH::P:::::::::::::E:::::::::::::::::::Q:: VNG0254 SS::RA::::N:::::V::::::P:::::::::Q:::E:::::::::::::::::::::: Hut1919 ::::R:::I:::::::V::GN::P:::::::::Q:::E:::::::::::::::::::::: consensus WKDKDAYGRSISSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDRMASALGVPRSVR #oth ...1....1.1113..1..1.........................1...1........1. VNG6351 ::::::::::LDAK::N::N:::::::::::::::::::::::::::::::::::::::: NP4822A ::::::::Q::::D:::::N:::::::::::::::::::::::::::::::::::::::: hla1771 ::::::::::L::::::::::::::::::::::::::::::::::::::::::::::::: HQ1867A ::::::::::L::::::::::::::::::::::::::::::::::V:::::::::::::: HVO_1478 ::::::::::L::::::::::::::::::::::::::::::::::::::::::::::::: Hbo0071 ::::::::::L::::::::::::::::::::::::::::::::::::::::::::::::: NP1684A :::::::::::::::::::::::::::::::::::::::::::::::::S:::::::::: hla0231 :::::::::::::K:::::::::::::::::::::::::::::::::::::::::::::: HVO_0733 :::::::::::::K:::::::::::::::::::::::::::::::::::::::::::::: HQ1227A ::::::::::L::::::::::::::::::::::::::::::::::V:::::::::::::: Hbo0801 :::::::::::::R:::::::::::::::::::::::::::::::::::::::::::::: rrnAC0016 ::::::::::L::::::::::::::::::::::::::::::::::::::::::::::::: Hmu1182 :::::::::::::K:::::::::::::::::::::::::::::::::::::::::::::: NP5186A :::Q:::::::::::::::::::::::::::::::::::::::::::::S::::::::I: VNG0254 :::::::::::::K:::::::::::::::::::::::::::::::::::::::::::::: Hut1919 :::::::::::::K:::::::::::::::::::::::::::::::::::::::::::::: consensus EVASVIYRRALNEDLIRGRSIEGVATSALYAACRQEGIPRSLEEVSEVSRVEQKEIGRTY #oth .....1.....31..........11.12......1.1...1.1.121.1.121....... VNG6351 :::::::::::K::::::::::::::AC::::::::::::T::::T::A:ID:::::::: NP4822A :::::T:::::D:::::::::::A::AT::::::::S:::::D::A::A::::::::::: hla1771 ::::::::::::::::::::::::S:A:::::::::::::::D::AD::::P:::::::: HQ1867A ::::::::::::::::::::::::::::::::::::::::::D::A:::::P:::::::: HVO_1478 ::::::::::::::::::::::::::::::::::::::::::D::A:::::P:::::::: Hbo0071 ::::::::::::::::::::::::::::::::::::::::::D::A:::::P:::::::: NP1684A :::::::::::DD:::::::::::::A:::::::::::::::D::AD:A::::::::::: hla0231 ::::::::::::::::::::::::S:A:::::::K:::::::::I:D:::::R::::::: HVO_0733 :::::::::::S::::::::::::::::::::::K:::::::::I:::::::R::::::: HQ1227A :::::::::::S::::::::::::S:::::::::K:::::::::I:::::::R::::::: Hbo0801 ::::::::::::::::::::::::::::::::::K:::::::::I:D:::::R::::::: rrnAC0016 ::::::::::::::::::::::::::AC::::::::::::::::::D::::::::::::: Hmu1182 :::::::::::D:::::::::::::::C::::::::::::::::::D::::::::::::: NP5186A :::::::::::DD:::::::::::::A:::::::K:::::::::I:::::::R::::::: VNG0254 :::::::::::K::::::::::::::::::::::K:::::::::I:::::::R::::::: Hut1919 :::::::::::DD:::::::::::::::::::::K:::::::::I:::::::R::::::: consensus RYISQELGLEMKPVDPKQYVPRFASELELSEEVQSKANEIIDTTAEQGLLSGKSPTGYAA #oth ..21...3.223.2..2211...2.3.5.111.22.141..111..2.1......1.1.. VNG6351 ::VA:::S::IQ:T:::E:L:::::D:::::::IA::R:::::S:::::::::::S:F:: NP4822A ::L:::::::I::A:::E:::::C:::A:::A:EQ:TR::::V:::E:M::::::::::: hla1771 ::::::::::L:::::::F::::::A:Q:::::::::T::::VS:::::::::::::F:: HQ1867A ::::::::::LR::::::F::::S:S:H:::::::::T::::VS:::::::::::::F:: HVO_1478 ::::::::::L:::::::F::::::A:D::::::A::T::::VS:::::::::::::F:: Hbo0071 ::::::::::L:::::::F::::::A:G::::::A::T::::VS:::::::::::::F:: NP1684A :::A:::S:GLE::::V::::::C:::G:::::EQ:TR:::EV:::K:M::::::::::: hla0231 :::::::::::R:::::K:::::S:::::::::::::::::E::::K::::::::::::: HVO_0733 :::::::::::R:::::K:::::S:::D::K::::::::::E:::::::::::::::F:: HQ1227A :::::::::::R:::::K:::::C:::D::K::::::D:::E:::::::::::::::::: Hbo0801 :::::::::::::::::K:::::S:::D::K::::::::::E::::K::::::::::::: rrnAC0016 ::VA:::E:K:E:::::::::::::::::::::::::::::::::::::::::::::::: Hmu1182 ::VA:::K:K:E::::::::::::::::::::::::::::::V::::::::::::::::: NP5186A :::::::::::E::::QK:::::C:::::::::::::KD::E::::K::::::::::::: VNG0254 :::::::::::::::::K:::::C:::::T:::::::::::E::::E::::::::::::: Hut1919 :::::::::::E:::::K:::::C:::::::::::::::::E::::K::::::::::::: consensus AAIYAASLLCNEKKTQREVADVAQVTEVTIRNRYQEQIEAMGIH- #oth ....................2..1................11244 VNG6351 ::::::::::::::::::::N::N::::::::::::::::::FGV NP4822A ::::::::::::::::::::E:::::::::::::::::::LEL:: hla1771 ::::::::::::::::::::::::::::::::::::::::::FR: HQ1867A ::::::::::::::::::::::::::::::::::::::::::FQ: HVO_1478 ::::::::::::::::::::::::::::::::::::::::::FR: Hbo0071 ::::::::::::::::::::::::::::::::::::::::::FR: NP1684A ::::::::::::::::::::E:::::::::::::::::::L:::: hla0231 ::::::::::::::::::::::::::::::::::::::::::::T HVO_0733 ::::::::::::::::::::E:::::::::::::::::::::::T HQ1227A :::::::::::::::::::::::::::::::::::::::::::PT Hbo0801 ::::::::::::::::::::::::::::::::::::::::::::G rrnAC0016 ::::::::::::::::::::::::::::::::::::::::::::: Hmu1182 ::::::::::::::::::::::::::::::::::::::::::::: NP5186A ::::::::::::::::::::E:::::::::::::::::::::::S VNG0254 ::::::::::::::::::::::::::::::::::::::::::::G Hut1919 ::::::::::::::::::::::::::::::::::::::::::::S