| ||||||||||||||||||||||||||||||||||||||||
| Pairwise sequence scores | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Consensus score | 1629 | NP0484A | hla0546 | Hut2314 | Hut2315 | rrnAC2713 | rrnAC2712 | Hmu3044 | VNG2416 | HQ1002A | HVO_0002 | HVO_2603 | Hbo2241 | Hbo1487 |
| 1004 | NP0484A | 2183 | 849 | 767 | 733 | 824 | 821 | 822 | 841 | 737 | 833 | 680 | 781 | 842 |
| 986 | hla0546 | 849 | 2809 | 724 | 695 | 685 | 690 | 733 | 787 | 850 | 872 | 722 | 797 | 898 |
| 989 | Hut2314 | 767 | 724 | 1674 | 954 | 871 | 883 | 808 | 803 | 765 | 764 | 773 | 760 | 741 |
| 956 | Hut2315 | 733 | 695 | 954 | 2915 | 872 | 905 | 909 | 877 | 709 | 723 | 721 | 757 | 682 |
| 1045 | rrnAC2713 | 824 | 685 | 871 | 872 | 1839 | 1034 | 893 | 757 | 713 | 823 | 761 | 759 | 763 |
| 1050 | rrnAC2712 | 821 | 690 | 883 | 905 | 1034 | 2143 | 994 | 833 | 642 | 802 | 747 | 768 | 789 |
| 1082 | Hmu3044 | 822 | 733 | 808 | 909 | 893 | 994 | 1694 | 804 | 761 | 872 | 727 | 760 | 870 |
| 994 | VNG2416 | 841 | 787 | 803 | 877 | 757 | 833 | 804 | 1867 | 824 | 841 | 811 | 835 | 892 |
| 1061 | HQ1002A | 737 | 850 | 765 | 709 | 713 | 642 | 761 | 824 | 2195 | 869 | 846 | 839 | 1018 |
| 1113 | HVO_0002 | 833 | 872 | 764 | 723 | 823 | 802 | 872 | 841 | 869 | 2040 | 814 | 812 | 1053 |
| 969 | HVO_2603 | 680 | 722 | 773 | 721 | 761 | 747 | 727 | 811 | 846 | 814 | 1519 | 854 | 853 |
| 981 | Hbo2241 | 781 | 797 | 760 | 757 | 759 | 768 | 760 | 835 | 839 | 812 | 854 | 1455 | 862 |
| 1169 | Hbo1487 | 842 | 898 | 741 | 682 | 763 | 789 | 870 | 892 | 1018 | 1053 | 853 | 862 | 2028 |
416 symbols consensus ------------------------------------------------------------ #oth 132323223322232333333314443542532445342445355464551111111111 NP0484A :::::::::::::::::::::::::::MSDRTDGGREGDPSETEPEPEGD:::::::::: hla0546 MDEGDRSDGGDEPDRKTGSADSDPVNDGDFSGDDGNGGDQSVSKEDCETG:::::::::: Hut2314 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: Hut2315 MSDPSDDRDPPDRERDRREPAPDTPSEPGDDDDDSAGNGGVADRDEQSAQDQPSAGRRER rrnAC2713 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: rrnAC2712 :::::::::::::::::::::::MAHISVDAGRRCFSAGGELTKSGGSVR:::::::::: Hmu3044 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: VNG2416 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: HQ1002A MTEKSGDDESPERWDSEHATGIDDSGIEDDHTDSNVGLDARSDVNIEYNQ:::::::::: HVO_0002 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: HVO_2603 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: Hbo2241 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: Hbo1487 :::::::::::::::::::::::::::::::::::::::::::MNDDQGE:::::::::: consensus ----------------------------------------------GEDARSPEGPA--- #oth 111111132332333322122222222213213331333333446654577858686111 NP0484A ::::::PFEYPAAEDRD::::::::::::::::::::::::::DGD::TGD::::LV::: hla0546 ::::::PGESSETGSADTETPSDERGRASDDRIETGQAGSKPSRGR::TG:DRTETD::: Hut2314 :::::::::::::::::::::::::::::::::::::::::VIESE::W:T:AR:KS::: Hut2315 DSTHSPPEDRTAGTRSPLEETEPSNQPPSGDRDHRGADSDQTGAAT:R:VAERHP:SIDR rrnAC2713 :::::::::::::::::::::::::::::::::::::::::::::M:R:ESTNST:S::: rrnAC2712 ::::::::::::::::::::::::::::SNNRKLIGRLRVFVVRMA:S:H::SD:DE::: Hmu3044 ::::::::::::::::::::::::::::::::::::::::::::::MSEP:G:NP:D::: VNG2416 ::::::::::::::::::::::::::::::::::::::::::::MT:D:VPD:TDGP::: HQ1002A :::::::::::::::::::::::::::::::::::::::::::ENDR:NENN:YDR:::: HVO_0002 ::::::::::::::::::::::::::::::::::::::::::::::-----------::: HVO_2603 ::::::::::::::::::::::::::::::::::::::::::::::VS:DSQS:AR:::: Hbo2241 ::::::::::::::::::::::::::::::::::::::::::::::-----------::: Hbo1487 :::::::::::::::::::::::::::::::::::::::::::RDTTD::PR::PN:::: consensus --------------FRSARRG-LLYVRDILSSVAAVVAVGLLLFAVSGVWPPMVAVESGS #oth 11334445446475467967475534214341243.241.33..231.1.1.2..1..1. NP0484A :::::::::EWVRW::TTDD:AVV:L:::VT:::::LL::AV::GI::I::::::::::: hla0546 :RDSNSSGKGVLYR::HN:E:P:MWI:EM:::::I:LVI::I::G::::::::::::::: Hut2314 ::::::::::::AID:FLKSSLA:FAF:T::::LI::MI:G::::T::::S:V::::::: Hut2315 ERRKPPQRRGSASGSD:WLTRVFQ:TF::A:::LI::LI:A::::T::::::L::I::P: rrnAC2713 :::::GGTDESVDASP:F:F::-::::::GT::G::LL::GF::::::::::L::I:::: rrnAC2712 ::::::::::::::--TE:P:GMM::T::V::AGS:LL::V:::::::::::L::I::P: Hmu3044 ::::::::::::::--DDQP:G:V:LF:LV::AG:::::::::::I::::::L::I:::: VNG2416 ::::::::RAAVRW:W:TD:ADV:F:::A:::LLV:SM::::::S:::::::L::::::: HQ1002A ::RREPKHTAESSILTRI:::AVTTL:ET:Y::IV:::I::I:::I:::::::::::::: HVO_0002 ::::::::::VLTRL:T:EE:P::F::EL:T:AL::L::::::::L:::::::::::::: HVO_2603 ::::::::::::::-------:--FA::A::T::V:::::AV:::::::::::::::::: Hbo2241 ::::::::::::::-------:-V::::T:QTL::::F:::::::LT::::::::::::: Hbo1487 ::VSVKSSDTFLHR:LN:ED:I::F::ET:V::S::::I::::::I:::::::::::::: consensus MEPHIDRGDLVFVMEEDRFSGDEADED----TGVVTAETGAETGYRTFGGPGDVIVYDPP #oth .2.3264.121213355.2415428661111311.1365254732552355.1.111522 NP0484A :::NME::::I:IVDNE::TP:::ISNDGST::::P:DVA::HDRTK:SDH::::IFL:N hla0546 :::N:EV::::::T:PG:LAP:A::N:::::I::::H:V:ETAD:Q:::SY:S:VI:R:: Hut2314 :Q::M:V:EF:::::DG::P:P:SQG:::::::I:::H::Q:A:::::::Y::::::Q:D Hut2315 :::N::T:::::::::H::::PG:T:E::::S:I:P:RA:Q::N::M:N:Y::::I:Q:D rrnAC2713 ::::::T::M::::DAE::::Q:DRH-::::-:::::AA::::::Q::QQ::::::FE:N rrnAC2712 :D:::KE::::::::::::::PGDH:-::::-:::::--ANDDS::A:QR:::::::E:D Hmu3044 ::::::T:::::::D::::A:EG:YA:::::::::P:NR::D::::S:QND:::::FQ:D VNG2416 :Q:NLQK::::::T::H:L:PEY:SGG::::::::PHR:ATAH::EKI::T::::::E:D HQ1002A :::EMS::::IL:S:TT::TPSY:H:N:::::::::::V:QSR::Q::::T:S::I:::: HVO_0002 ::::MHK:::::ITGPE:YAP:S:V:G:::::A:::::::::VD::K:::::S:::::D: HVO_2603 :Q:TLE:::::V:TA:V:YG:PA::DY::::-:::::--N:SE::GRL::::::V:::T: Hbo2241 ::::::T::M:V:SDAG::::AS:::H::::-:I::Y--AESD::SR:S:K::::::M:: Hbo1487 ::::MY::::I:ITAP:::TP:Y:YG:::::::I::VDI:S:K:FSS:N:::S::::::: consensus GRAGS-PIIHRAMFWVEAGENWYDRANPAYIGA--DSCDELRNCPAPHAGFITKGDN--- #oth 34766211...1312.343...112135624543133.5..53...233.11.2..2322 NP0484A :EHPI:QV:::::L:::D::::::::D:DA::GA:EN::::EA::::NG:::::::D::: hla0546 ::TT::::::::::H::E::::H:::DDR:HN:::AD:G::NH:::::D::::L:::::: Hut2314 :NETKT:::::::::::N:::::E::GSTA::NA::::E::A:::::::::::::::SVT Hut2315 :NGEAT::::::::::A:E::::::GD::A::NA::N:E::A:::::::::::::::::: rrnAC2713 :NEQRT:::::S:L::D::::::::::RE:V:NA:::::::::::::::::::::::KVT rrnAC2712 :NSRQT:::::::L::::D::::::::QD:::SA:::::::TS:::D::::::::::::: Hmu3044 :DGA:T:V::::::::NES:::::K:D::::N::::::E:::::::DS:::V:::::::: VNG2416 :NSRAV::::::R:::DNE:::::::DESIVA::::::S::::::::::::::::::NRS HQ1002A Q:V:::::::::H:Y::D:::::EE::S::LT:::SG:::::::::::::::::::A::: HVO_0002 :S::P:::::::::::DD::::::::::E:MS::::N:R::A::::EYS::::::::::: HVO_2603 S:D:::::::::V::::D:::::::::SS:VDGS::::A::L::::::::YV:R::D::: Hbo2241 E:T:::::::::R:Y::S::::::::A:DA:APGI:N::::T:::::N::Y::::::::: Hbo1487 S:::::::::::R:Y:::E:::::K:::N::N::::::A:::::::::::::::::A::: consensus NGRYDQVNG--I-------ADPVKPEWVRGTAEVRVPYLGYVRLQLAG--ALA-----A- #oth 166...3642131111111261.145.151314531.51.62.16766117866756745 NP0484A ::D:::::Q::L:::::::S:::::::IT::::::I::::HI::TF::::QP:PPVTEPV hla0546 ::E:::A::::L::::::::A:::AD::T:V:R:::::::::::ITT:::QADLSDVL:T Hut2314 :S::::LME::::::::::SS::::A:IV:::::G::W::QL::ARD-::---:::::-: Hut2315 :RY::::GNQ:F:::::::SG::::::II::::YN::G::R:::LTGE:::QSRYGTV:K rrnAC2713 :SK::::T:::A:::::::STV:R::::I::GIF:I:R:::::V:PSQ::LWHTSVSMPV rrnAC2712 :::::::GSSP::::::::SE::::G::V::::M:::L::Q::::---::-WNQAGATDV Hmu3044 :AG::::::::LPSCGPGAC:::RKS::V::::T:::L::NI::::QR::::::::::-: VNG2416 :NY:::SA:::L:::::::SE::::G:::::::Y:::FA:W:::VIS:EATV:RPGGA:L HQ1002A :A::::AT::::::::::::G:::RT:I::A:RF:I::::::::::::::::TVNPVLWV HVO_0002 :P:::::S:::::::::::::::R::::Q:V:RI:I:L::W:::T::N::SI:TTTPV:P HVO_2603 :DY:::AR::::::::::::S::R:D:::AKGQFH:::::EL::EVQK::L:-:::::-: Hbo2241 VRQ:::AR:::L::::::::R::::::::AK:Q::::F::W:::AI::::KA-:::::-: Hbo1487 ::::::AS::::::::::::E:::T::ID:V:H::I::::::::E:::::MF:PMPVS:: consensus -------------------------------------------------------- #oth 44445444424323345453543554331233333323323211221111111111 NP0484A G:::::::::::::::ATNATSAGPQAV:::::::::::::::::::::::::::: hla0546 SVVMQTGGVGADADGVSSGSGSSEKITVPDAKPIVSGGEVTAEAVA:::::::::: Hut2314 :::::::::::::::::::::::::::::::::::::::::::::::::::::::: Hut2315 DAEHVTAGTTVTAATNGTESVDFPSIAP:::::::::::::::::::::::::::: rrnAC2713 G:::::::::::::::DVSAPAAS:::::::::::::::::::::::::::::::: rrnAC2712 GANETGLAVTNEAETAAVNATASG:::::::::::::::::::::::::::::::: Hmu3044 :::::::::::::::::::::::::::::::::::::::::::::::::::::::: VNG2416 GGERALGQA::::::::::::::::::::::::::::::::::::::::::::::: HQ1002A SGIR:::::::::::::::::::::::::::::::::::::::::::::::::::: HVO_0002 APVEFVDVPTMETAVPDASTANAPAGDAPGSDAAATTAPLRVEAGNTPMRTAALAA HVO_2603 :::::::::::::::::::::::::::::::::::::::::::::::::::::::: Hbo2241 :::::::::::::::::::::::::::::::::::::::::::::::::::::::: Hbo1487 ::::::::::::::::HVDSVNAQTDTAPGFESTNQTVSVV:::::::::::::::