| |||||||||||||||||||||||||||||||
| Pairwise sequence scores | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Consensus score | 1975 | hla1866 | hla2176 | NP2604A | HQ2792A | VNG1412 | HVO_2861 | Hbo2627 | Hut0603 | rrnAC1001 | Hmu1645 | NP1910A | hla1217 |
| 468 | hla1866 | 2502 | 129 | 279 | 236 | 294 | 326 | 291 | 278 | 290 | 292 | 313 | 369 |
| 406 | hla2176 | 129 | 2267 | 279 | 303 | 331 | 296 | 292 | 313 | 271 | 282 | 370 | 320 |
| 1323 | NP2604A | 279 | 279 | 1950 | 885 | 1030 | 1111 | 1093 | 1004 | 1090 | 914 | 945 | 1064 |
| 1140 | HQ2792A | 236 | 303 | 885 | 1951 | 938 | 987 | 1113 | 991 | 965 | 874 | 786 | 915 |
| 1377 | VNG1412 | 294 | 331 | 1030 | 938 | 2137 | 1131 | 1138 | 997 | 1154 | 939 | 940 | 1037 |
| 1400 | HVO_2861 | 326 | 296 | 1111 | 987 | 1131 | 1970 | 1347 | 1081 | 1130 | 929 | 948 | 1112 |
| 1404 | Hbo2627 | 291 | 292 | 1093 | 1113 | 1138 | 1347 | 1982 | 1111 | 1181 | 1007 | 909 | 1060 |
| 1315 | Hut0603 | 278 | 313 | 1004 | 991 | 997 | 1081 | 1111 | 1960 | 1205 | 1046 | 947 | 1050 |
| 1428 | rrnAC1001 | 290 | 271 | 1090 | 965 | 1154 | 1130 | 1181 | 1205 | 2006 | 1171 | 921 | 1013 |
| 1211 | Hmu1645 | 292 | 282 | 914 | 874 | 939 | 929 | 1007 | 1046 | 1171 | 1692 | 882 | 914 |
| 1142 | NP1910A | 313 | 370 | 945 | 786 | 940 | 948 | 909 | 947 | 921 | 882 | 1952 | 1041 |
| 1317 | hla1217 | 369 | 320 | 1064 | 915 | 1037 | 1112 | 1060 | 1050 | 1013 | 914 | 1041 | 1945 |
378 symbols consensus ----------------MTSNLLETDVGDVLEAVFDADDDEVYVVDPSAETIEALVAAASD #oth 111111112212234457636377466845844475754737132246655652244694 hla1866 ::::::::MAPPTAGED:::PDSD:PSE:AV:LDE:::GLADAIESALAGRS:I::VGVP hla2176 :::::::::::::VTSSSPPT:PLAD:TMSIGS:TDP----I::::DPSLLA::A::YR: NP2604A :::::::::::::::::K:::::RTM::::::AL::A:::LF:IN:D::A::S::ETL-- HQ2792A ::::::::::::::MSLDA:V:G::M:H::SS:LSEVTGA::::N:TQDLTK:::TDC:: VNG1412 MRPIKLNSHTPYRWVE::A:::G:T:A:T::G::GD:P::L::::::RHAV::::E::N: HVO_2861 ::::::::::::::MTIR::::AEG:E:IIQS:LSSSE:::L:AN:T::V::G:::V:T: Hbo2627 ::::::::::::::MTID::M:TE:AERI:RS:L:SGAED:L::::T:DV:DT:::V::E Hut0603 :::::::::::::::MS:D::IA::IRT::::AVP:T-:R:T::N:AP:::V:::STLE: rrnAC1001 ::::::::::::::::::E:::QD:I:SM:TT::G:T:EP::::N::RQ::SE::STLDA Hmu1645 ::::::::::::::::--------------------------:L:E-------------- NP1910A :::::::::::::::::ETAQ::SG:VG:V:TA:TDGT:SLV:::::E::LA:::S:SF- hla1217 :::::::::::::::::V:::::A::EN::D:A:AG::Q:LF:::::::::VS::E::I: consensus --------------------------DADLPEVRLLADERT------------LKDVMDD #oth 411111111111111111111111115674153524233531111111111111233223 hla1866 ::::::::::::::::::::::::::L:L::PI-:A:R:::RGGTWRVACRPGVA:ALGR hla2176 AAPEAVNPDLDALRDAARGDEAPLSPA::::RLTV::RDHV::::::::::::VDAIT:P NP2604A ::::::::::::::::::::::::::::ES:P:C:F::SE:::::::::::::::::L:: HQ2792A I:::::::::::::::::::::::::LTNDTS::::S::QR::::::::::::::E:::N VNG1412 Y::::::::::::::::::::::::::TP::TL:V::::::::::::::::::::::::: HVO_2861 I::::::::::::::::::::::::::G::::I::V:::GV::::::::::::::::L:: Hbo2627 T:::::::::::::::::::::::::EDG:::I:MI:::SV::::::::::::::::::: Hut0603 ::::::::::::::::::::::::::HDSA:S::::SP:HA::::::::::::::Q::G: rrnAC1001 :::::::::::::::::::::::::::SGA::::::::::A::::::::::::::::::: Hmu1645 ::::::::::::::::::::::::::HE:P:A:::::EN:A:::::::::::::::E:G: NP1910A :::::::::::::::::::::::::::RT::TLLV::E::::::::::::::::::A:G: hla1217 ::::::::::::::::::::::::::RD::::MSM:V:::::::::::::::::::::E: consensus -FIVASNAADLVEDGVLSLRTLDDEPD--NSLLVTPDAVVALVTA-----GDQVAGLTTD #oth 1.321162.322233524213554766113424238354423284111115372332632 hla1866 A:VLGTAV:EA:AE:AIE:::VA::::VQRI:FAS::RID:V:GP:::::EKDRTLV:EE hla2176 ::YS::QL:A:T:A::WD::::AAPQP:::AV:AGRSDGCVVIA:SSGRD::GASESP:: NP2604A ::L:::R:::HI:ADR:EI:V-N:AAA::::::::A:::::V:RG:::::D::::::::: HQ2792A :::::::::E::DSN::T::VD:VSEP:::::I::TS:T::MIQT:::::NN:::::IA: VNG1412 ::::::T::N:::::S:A:::V:V:NR::SPM:::EERAI::LET::::::RF:G::A:: HVO_2861 :::::::::N::A::A::M::AA::VE:::T:F:::NS:::::A::::::::K::::V:: Hbo2627 :::::::::::::SES::M::T:NGTA:::A::I:K::::S::::::::::::::::V:T Hut0603 ::L:::S::::ID::T::::V::EQ:V:::::V::D::::S:::::::::T:AA:::::: rrnAC1001 ::L:::T::::IDE:R:TM:L:::V:N::H:VA::V:T:Y::::I:::::S:T:G::G:: Hmu1645 ::::::T::::::AD::E:KI:E:V:N::H:::IGSES::S:ID::::::::A:::::S: NP1910A ::V:::K::A:::E:D::::V:SEPA:::::VFAAE:QI::P:PT:::::::G::A:S:: hla1217 ::L:::K:::::A::::D::L:GETV::::A:F:S:SR::V::ST:::::D:R::A:AS: consensus DDAFV-----DSAYDAYDDAWADADEYSLRTPAISRVRETLEEEIGEETRADFDAVLDSL #oth 35544111114645554877235.5738221.237114412534234533322441.523 hla1866 APKR::::::TP:GR:VRERF:A:TPETVDM::R::LLAAAC:TLDDRFAD:VA::::A: hla2176 RGPWCRISADPTLR:R:V:LV:::EAVRI:::SRH:LYGA:RDRC:S:VADETVRL::AG NP2604A :E::I:::::::::QRITGE::::ENFN::::SLI::::::TD:L::S::EN::::::A: HQ2792A EIE:::::::T:VR:S:EQ:FES:TS:P:Q:::::S::S::AS:::D:::S:::S::TT: VNG1412 ::DLA:::::ET::::ANTD::A:::FA::::::D::::::GDD:NADVGD:::D::A:: HVO_2861 :E::::::::ET:FE:HQAH:E::P:FK::::PLA::::::G:D:S:::L:::::::G:: Hbo2627 ::E:::::::AA:::T:TMQ:EE:PQ:K::::P:E:::A::::::SADA:D:::S::S:: Hut0603 :GE:::::::A:TVAF:::V:ET:S:F:::::PL::::S::AA::S:DA::::::::::: rrnAC1001 :A:::::::::N:::YH:S::T::::::::::PLN::QS:::SD::P::AS::ND::S:: Hmu1645 E:::L::::::DISSF:::E:DR::S:::::::M:::MD:::SD::P::A:::EG::A:: NP1910A :GVV:::::::DV:ES:H:RFET:LD:D::::S:T::::::::ALD:Q:::::::::EAV hla1217 ::E:::::::AEVFETHS::F:::ET:G::::::::::::MAA::::A::E::::::AAM consensus Q-TARGDGDGLDEVTISLLVAAKNEELLYDISKW---------GEDVGIASKATFSRTKT #oth 514222234333213322122.1255.12.11111111111112.12.211211111211 hla1866 PYG:V:RTGEVTDR:LLVAL::RHDH::W:LRR:IGDGADGGSA:G::::AGQDLTDDRR hla2176 N:DPLDR:AA---RVRAYAAG:RRAA:DR:LRRA:::::::::C::A:LG:S:::T:I:R NP2604A E:::::::E::::::::::::::::D:::::::::::::::::::::::::::::::::: HQ2792A :::::D:RSA:N::I:::::::::NV:::::::::::::::::::::::::::::::::: VNG1412 E:::::::E:::::::::::::::R::::::::::::::::::::::::::::::::::: HVO_2861 S:S:::::::::::::::::::R::V:::::::::::::::::::::::::::::::::: Hbo2627 :::::::::::::::::::::::::V:::::::::::::::::::::::::::::::::: Hut0603 S::::S:DG:I:::::::::::R:R:::::::::::::::::::::::L::::::::::: rrnAC1001 S:::::::::::::::::::::R:G:::::::::::::::::::::::L::::::::::: Hmu1645 ::::::::::::::::::::::::G:::::::::::::::::::::I:L::::::::::: NP1910A P:EV:SR::S::::S:L::LT:::GN::::::::::::::::::::::V::::::::::: hla1217 D:S:::ADGEV::::VA:::::::DV:::::::::::::::::::::::::::::::::: consensus KLEDLGLIDTEKVPIDVGRPRLRLKLGDDRLQDADADELASVAQSLLA------------ #oth 61126112211111221...11..422444.75343543264355445311111111111 hla1866 A:VRR:::EAI:M:AGD:::Q:::RAV::A:LR:TPE:VL::LRGRF:LPVDEDGRVRQP hla2176 D:VEA::LG::S:SQP:::::Q::-VARGA:A::SSPAA:LA:LRKKGL::::::::::: NP2604A RM::N:ILG::::::::::::::::::::N:RG::IGS:VEST::M:E:::::::::::: HQ2792A E::ES::::::::::::::::::::::HNQ:VR:SS:Q::G::E:::::::::::::::: VNG1412 :::::::V::::::::::::::::::A::::E::P:P:F:N::E:M:::::::::::::: HVO_2861 :::E:::::::::::::::::::::::A:E:VA:G:::::DE::K::DA::::::::::: Hbo2627 :::EM::::::::::::::::::::::::::VN::P:Q::G::::::::::::::::::: Hut0603 Q:::K::L::::::::::::::::L::EQ:::::::::::D::IE::SS::::::::::: rrnAC1001 ::::MN::::::::::::::::::M::::::K:::P:::::::::I::A::::::::::: Hmu1645 T:::M:::::::::::::::::::M:::E:::SV:S::::::::GII:S::::::::::: NP1910A D:::A::L::::::::::::::::::::N:::GR::VD:VET:ADI:N:::::::::::: hla1217 R:::::I:::::::::::::::::::::E::NGL::A:::AEVAEMM::::::::::::: consensus ------------------ #oth 111111111111111111 hla1866 PGRDERRPVWERTRRDKN hla2176 :::::::::::::::::: NP2604A :::::::::::::::::: HQ2792A :::::::::::::::::: VNG1412 :::::::::::::::::: HVO_2861 :::::::::::::::::: Hbo2627 :::::::::::::::::: Hut0603 :::::::::::::::::: rrnAC1001 :::::::::::::::::: Hmu1645 :::::::::::::::::: NP1910A :::::::::::::::::: hla1217 ::::::::::::::::::