|
Pairwise sequence scores | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Consensus score | 1377 | HQ1672A | hla2216 | HVO_1072 | Hbo0572 | VNG0559 | NP1426A | Hut1249 | rrnAC3523 | Hmu0991 | HQ2050A | rrnAC1903 | HVO_2250 |
1156 | HQ1672A | 1372 | 1153 | 1171 | 1149 | 1108 | 1055 | 1073 | 1048 | 1034 | 848 | 809 | 822 |
1223 | hla2216 | 1153 | 1873 | 1206 | 1170 | 1128 | 1136 | 1141 | 1063 | 1093 | 887 | 905 | 900 |
1192 | HVO_1072 | 1171 | 1206 | 1394 | 1260 | 1112 | 1102 | 1076 | 1048 | 1079 | 878 | 857 | 864 |
1189 | Hbo0572 | 1149 | 1170 | 1260 | 1382 | 1103 | 1081 | 1061 | 1030 | 1061 | 858 | 840 | 859 |
1178 | VNG0559 | 1108 | 1128 | 1112 | 1103 | 1389 | 1097 | 1123 | 1103 | 1128 | 860 | 849 | 867 |
1203 | NP1426A | 1055 | 1136 | 1102 | 1081 | 1097 | 1387 | 1083 | 1081 | 1134 | 880 | 877 | 894 |
1172 | Hut1249 | 1073 | 1141 | 1076 | 1061 | 1123 | 1083 | 1372 | 1161 | 1159 | 867 | 853 | 891 |
1163 | rrnAC3523 | 1048 | 1063 | 1048 | 1030 | 1103 | 1081 | 1161 | 1390 | 1233 | 865 | 865 | 888 |
1182 | Hmu0991 | 1034 | 1093 | 1079 | 1061 | 1128 | 1134 | 1159 | 1233 | 1403 | 833 | 852 | 883 |
949 | HQ2050A | 848 | 887 | 878 | 858 | 860 | 880 | 867 | 865 | 833 | 1328 | 1026 | 1044 |
972 | rrnAC1903 | 809 | 905 | 857 | 840 | 849 | 877 | 853 | 865 | 852 | 1026 | 1345 | 1157 |
966 | HVO_2250 | 822 | 900 | 864 | 859 | 867 | 894 | 891 | 888 | 883 | 1044 | 1157 | 1328 |
254 symbols consensus ------------------------------------------------------------ #oth 111111111111111111111111111111111111111111111111111111111111 HQ1672A :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: hla2216 VVRTVRHPRPARGDGGVLGEAGARLRVTESRLRVACSRTPRPVRSGFTGPDNRHALLIRP HVO_1072 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: Hbo0572 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: VNG0559 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP1426A :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: Hut1249 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: rrnAC3523 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: Hmu0991 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: HQ2050A :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: rrnAC1903 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: HVO_2250 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: consensus ----MDQLRQSLLEAPIIEKDGYEYFVHPISDGVPMLEPELLREIVIKIIRKAELEDVDK #oth 1111.22.42..11..1.1.22.3.1...2.1...1.3.3....1.13121223222... HQ1672A ::::::::::::::::::::GD:::::::V:::::V:R::::::::::::::V:VDN::: hla2216 STGD:::::::::D::::::GE:Q:::::::::::::K:::::::::R::::::::N::: HVO_1072 :::::::::::::D::::::GD:::::::::::::::::G:::::::::::::N::N::: Hbo0572 ::::::::::::::::::::GE:::::::::::::::::G:::::::::::::D:::::: VNG0559 ::::::R:K::::D:::::::::H:::::::::::::::::::::::R:::::::DE::: NP1426A ::::::::Q::::::::::::::H:::::::::::::::N:::::::::::::Q::N::: Hut1249 ::::::R:K::::D::V:::EE:Q:::::::::::::R:::::::::R:::::::::::: rrnAC3523 ::::::R:KK::::::::::E::H:::::::::::::R:::::::::::::::::D:::: Hmu0991 ::::::::K::::D:::::::::H:::::::::::::R:::::::::::::::::::::: HQ2050A :::::ER:HE::H:::::D::::::L:::::N:::V:::G::::V::D:MQQSDF-N::: rrnAC1903 :::::EK::E::H:::::D::::S:L:::L:N::::::::::::V:VGVT:A:D:-:::: HVO_2250 :::::QR:EE::H:::::D::::S:L:::::N:::::D:Q::::V:VG:T:A:D:-:::: consensus IVTPAAMGIHISTAVSLMTDIPLVVIRKRQYGLDGEVSLSQQTGYSESEMYINDVEEGDR #oth ..1.1.....11..1..1..1.1..1...2...21.22.314...1.22.11..162114 HQ1672A :::::::::::::::::::::::::::::::::E:::::::::::A:N:::::::RD:E: hla2216 ::::::::::::::L::::::::::::::::::::::P:F:E:::::::::::::::::: HVO_1072 :::::::::::::::::::::::::::::E:::::::::H:::::::GD:F::::N:::: Hbo0572 :::::::::::::::::::::::::::::E::::::I::::::::::ND:F::::S:D:: VNG0559 ::::::::::::::::::::::I::::::E:::P:::A:::E:::::N:::::::H:::: NP1426A :::::::::::::::::::::::::::::E::::::TP:F:::::::NQ::::::D:::S Hut1249 :::::::::::::::::::::::::::::::::E:::::Q:V:::::::::V:::Y:::K rrnAC3523 :::::::::::::::::::::::::V:::::::::::::::V:::::::::V:::Y:::Q Hmu0991 :::::::::::::::::::::::::V:::::::::::::::V:::::N:::V:::Y:::: HQ2050A ::A:E:::::LA::L::Q::V::::::::S:::P:::A:HKS::::::::::::I:A::: rrnAC1903 ::A:E::::::A::L::Q:::::::::::S::::D::P:HKT::::::::F:::I:A::D HVO_2250 ::A:E::::::A::L::Q::V::::::::E:::::::A:H:T::::::::F:::I:D::: consensus VLVLDDVLSTGGTLAAICDAL-DDIGADIVDIVAVIKKA-GENELDDTDYDVKTLINVDV #oth 2.12..1......141223..1242.1115.212211.42.3222224334121.2114. HQ1672A :::::::::::::MR:VL:::::Q:::EV::T:::::::::P::::ES:H::::::::R: hla2216 :::::::::::::MK::L:::T:EV::EV::V::::::::::::::::::N:::::::T: HVO_1072 :::::::::::::MK:VL:::::H::::V::T::I::::::P:::::S:HH:::::::T: Hbo0572 :::I:::::::::MC:VL::::KST::EV::T:::::::::P:::::::HH:::::::T: VNG0559 ::::::::::::::R::T::::EQT:::VA:VL::::::::P:::::::M::R::::::: NP1426A ::::::::::::::S:::S:::E::::::::V::::::VG:::::ESSP:SA:::::::: Hut1249 :::::::::::::::G:TG:::EE:::E::::::::::VG:::KI::S:F:::::::::: rrnAC3523 :::::::::::::::GLTG:::E::::::R:::C:::::D:T:K::EAG::A::::::Q: Hmu0991 ::::::::::::::::LTG:::E::::::C:::C::::EG:::K:A:DG:HA:::::::: HQ2050A I:II::L:::::::::::G:::::::TE:I:::V::R:I::QSAM:ELEH::TS:VDIT: rrnAC1903 L:IV::L::::::M::::E::::::::::S:::V:FR:Q:::SA::::::::TS:LDIS: HVO_2250 :::V::L:::::::::::G::::::::EVS:::VA:R:V:::TA::::::EATS:VDIS: consensus EDGEVVIVDENGDD #oth 5222.313145114 HQ1672A T::T:::::S:::G hla2216 :::::::::AK::: HVO_1072 ::::::::::H::: Hbo0572 :::::::::::::: VNG0559 A:::::V::DQ::H NP1426A :::::::I:S:::N Hut1249 ::M::I::::Q::G rrnAC3523 I::::T::::H::: Hmu0991 V:::::V::DY::: HQ2050A :::::T:Q------ rrnAC1903 DQDG:T:H:----- HVO_2250 DEDG:E:H------