| ||||||||||||||||||||||||||||||||||||||||
| Pairwise sequence scores | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Consensus score | 4931 | rrnAC1310 | Hmu1814 | Hmu0733 | rrnAC0155 | VNG0401 | HQ1716A | hla2364 | HVO_0874 | Hbo0665 | NP0210A | Hut0355 |
| 3799 | rrnAC1310 | 4878 | 4351 | 3205 | 3506 | 3566 | 3549 | 3632 | 3614 | 3641 | 3616 | 3651 |
| 3814 | Hmu1814 | 4351 | 4887 | 3216 | 3473 | 3590 | 3603 | 3649 | 3590 | 3611 | 3607 | 3647 |
| 3896 | Hmu0733 | 3205 | 3216 | 4859 | 3849 | 3639 | 3681 | 3680 | 3666 | 3658 | 3623 | 3791 |
| 4250 | rrnAC0155 | 3506 | 3473 | 3849 | 4915 | 3971 | 3952 | 4060 | 4037 | 3989 | 3960 | 4039 |
| 4404 | VNG0401 | 3566 | 3590 | 3639 | 3971 | 4938 | 4133 | 4206 | 4210 | 4252 | 4237 | 4234 |
| 4400 | HQ1716A | 3549 | 3603 | 3681 | 3952 | 4133 | 4914 | 4269 | 4356 | 4331 | 4146 | 4228 |
| 4543 | hla2364 | 3632 | 3649 | 3680 | 4060 | 4206 | 4269 | 4945 | 4374 | 4335 | 4300 | 4291 |
| 4511 | HVO_0874 | 3614 | 3590 | 3666 | 4037 | 4210 | 4356 | 4374 | 4915 | 4660 | 4243 | 4287 |
| 4521 | Hbo0665 | 3641 | 3611 | 3658 | 3989 | 4252 | 4331 | 4335 | 4660 | 4918 | 4274 | 4302 |
| 4440 | NP0210A | 3616 | 3607 | 3623 | 3960 | 4237 | 4146 | 4300 | 4243 | 4274 | 4913 | 4318 |
| 4525 | Hut0355 | 3651 | 3647 | 3791 | 4039 | 4234 | 4228 | 4291 | 4287 | 4302 | 4318 | 4925 |
642 symbols consensus MSSVDKQLEDLKAEIEEEVPRDISVSDVKYEGPELVVYTRDPKKFAQNGDLVRRLASKLR #oth ..41142.25324214413.42.2131.21......1..2.1251.72221114..22.1 rrnAC1310 :::A:ET:DRI::QV:::T:D::EIES:AF::::::I::P:AQTV:NRDGI::N::QT:: Hmu1814 :::A:ET::KIRTTV:Q:T:D::EIAS:TF::::::I::P:AR:V:NRDR::PN::QT:Q Hmu0733 ::T::::::TVRET:D:V:::E:TI:::T:::::::I::::::Q::R::::::::::E:: rrnAC0155 ::T:::::::V::T:D:::::R::::::T:::::::I::::::E::A:S::::::::::: VNG0401 ::T::R:::E:QD::VS:I:A::::T:::::::::::::::::Q:::D:::::::::::: HQ1716A :::::T:::E::S::MA:L:S:::::::T::::::::::::::R::K::::::D::G::: hla2364 ::Q:::::DT::S:::Q:I:N::T:T:::::::::::::::::E::GD:::I:::::::: HVO_0874 :::::::::N:::::TN:L::::::::::::::::::::::::::::::::I:K:::::: Hbo0665 :::::::::E:::::TN:L:S::::::::::::::::::::::::::::::I:K:::::: NP0210A ::A:ERK:D:I:ST:VS:::N::::::::::::::::::K:::R::SD:::::Q:::::: Hut0355 ::N::Q::A:T:ET:VS:::N:::IT::T:::::::I::::::S::E::::::::::::: consensus KRITVRPDPDVLSPPARAREQIRSVIPEEAGVTDLDFHEDTGEVVIEAEKPGMVIGRHGS #oth ...21..1242.33152.23415431.12.2132.1.151....212.3...4...13.2 rrnAC1310 :::N:::TQEA:V::NE::A::TQT:::D:::QN:::DRQ::::F:::::::R::::::A Hmu1814 :::N:::TQGA:VDEQ::::E:S:T::DA:::QN:::DH:::::F:::::::L::::::E Hmu0733 :::S::::::::T::S::E:A::KAV:D::EISE::::A:::::L:K:T:::V:::QS:E rrnAC0155 ::::::::::::A:::E:E:A::EL:::::::M::N::A::::::VQ:Q:::V::::R:: VNG0401 :::::::::A:::S:K:::DRVLD:::::::::N:::::::::::::::::::::::::: HQ1716A ::::I::::EE:AS::::QD::HD:::D::::::::::H:::::::::::::I::::G:E hla2364 ::::I::::SA:A:::::E:EV:::::::::::::::::::::::::::::::::::R:: HVO_0874 :::::::::::::D:RE:EPK:L:::::::::::::::I::::::::::::::::::::: Hbo0665 :::::::::::::::RE:E:RVL:::::::::::::::::::::::::S::::::::::: NP0210A :::::::::E:::R:SD:::::M:::::::::::::::P::::::::::::::::::::: Hut0355 ::::::::T::::::RE::DEVH:::::::S::::::::::::::::::::::::::::: consensus TLREITQEVGWTPEVVRTPPIESSTVSNVRNFLKQERDERRDILERVGRQIHREEMSDDE #oth ..11.1241...........1..1..2...12.11..21..21.112....1.1322.21 rrnAC1310 ::D::SAS::::::::::::M::::::::::Y:::::E::::::Q::::::N:PTT::ED Hmu1814 ::D::SAS::::::::::::M::::::::::::::::T:::::::::::::N:PTTD:AD Hmu0733 :::K:::R:::::::::::::::A::Q::::L:Q::::::::V:::::::::::P::::: rrnAC0155 ::::::::::::::::::::::::::E::::::::::ED:::::::::::::::P::::: VNG0401 ::::::::A::::::::::::::::::::::::::::::::::::T::::::::::Q::: HQ1716A :::::::Q:::::::::::::::::::::::::::::::::::::::::::::::L:::: hla2364 :::::::K::::::::::::::::::::::G:::N::E:::::::::::::::::::::: HVO_0874 :::::::K:::::::::::::::::::::::::::::ED::R::::T:::::::QL:::: Hbo0665 ::::::K::::::::::::::::::::::::::::::::::Q::::::::::::QL:::: NP0210A :::::::::::::::::::::::::::::::::::::E::::::::I::::::::::::: Hut0355 :::::::K::::::::::::::::::::::::::::::D::::::::::::::::::::: consensus WVRITTLGCCREVGRAAFILSTPETRILIDCGDKPGAEGEVPYLQVPEALGAGANSIDAV #oth 1..211..1......11.111..11.1.1.1.11..13222...221..113.2332... rrnAC1310 :::L::::::::::::::::::::S::::::::::::::::::::A::::A::P::L::: Hmu1814 :::L:::::::::::::::::::DS::::::::::::::::::::A::::A::PQ::::: Hmu0733 Y::::M::G::::::N::::::::S:V::::::V::SS-QQ:::EI:::F:::::G:::: rrnAC0155 Y::::::::::::::::::::::D::::::::N::::N::Q:::DI:::F:::T:G:::: VNG0401 Y::V::::::::::::S:V:::::::::V:::::::S:D:::::::Q:::AG:::T:::: HQ1716A ::::S:::::::::::S:V:::::::::::::::::SD-D:::::A:::::S::S:V::: hla2364 ::::::::::::::::::::::::::V:::::::::::::::::::::::::::ATL::: HVO_0874 ::::::::::::::::S::V::::::::V:::::::SD-D:::::::::::S::::L::: Hbo0665 ::::S:::::::::::S:::::::::::::::::::SD-D:::::::::::S::::L::: NP0210A ::::::::::::::::::::N:::::V:::::::::::::::::::::::::::SNL::: Hut0355 ::::::::::::::::S:::::::::V:::A:::::::D:Y::::::::::V::S::::: consensus VLTHAHLDHSALIPLLFKYGYDGPIYTTEPTRDLMGLLTLDYLDVAAKEGRTPPYDSEMV #oth 1.........112.1..1........1.1.....1...1..2..21221.11...1.22. rrnAC1310 ::::::::::::::I:::::::::::::A:::::::::Q:::::::S::::::::E:QQ: Hmu1814 ::::::::::::::I:::::::::::::A:::::::::Q::::::::::::A:::E:QQ: Hmu0733 ::::::::::G:V::::E::::::::C:::::::L::::::A::ATTG::HA::::::R: rrnAC0155 ::::::::::::V::::E::::::::C::::::::::::::H::T::DD::::::::::: VNG0401 I::::::::::F::::::::::::::C::::::::::::::::::::::::A:::::::: HQ1716A ::::::::::::L:::::::::::::::::::::::::Q::::::::::::::::::S:: hla2364 :::::::::::FV::::::::::::::::::::::::::::::::::::::::::E:SQ: HVO_0874 ::::::::::::::::::::::::::::::::::::::::::::::S::::::::E:::: Hbo0665 I::::::::::::::::::::::::::::::::::::::::::::::::::::::E:::: NP0210A ::::::::::::::::::::::::::C:::::::::::::::::::S::::::::::SQ: Hut0355 :::::::::::::::::::::::::::::::::::::::::::::::::::A:::::::: consensus REAIKHTIPLEYGDVTDIAPDIKLTFHNAGHILGSAVTHFHIGDGLYNVAFSGDIHYDDT #oth .111..1.12.1.1....1..2...2.1...1..1112...1.1.2...........3.. rrnAC1310 :D:L:::::::F:N:::::::::::M:::::::::::C:::::E:R:::::::::::K:: Hmu1814 :D:L:::::V:::N:::::::::::M::::::::A::::::::::H:::::::::::T:: Hmu0733 :D::::::T::::::::::::::::L:D:::A:::::::::::::::::::::::::::: rrnAC0155 :::::::::::::::::::::::::L:::::::::S:C:::V:::::::::::::::::: VNG0401 ::::::C::::::::::::::V:::::::::::::::S:::::::::::::::::::::: HQ1716A ::T::::::::::::::::::V:::::::::::::::::::::::::::::::::::E:: hla2364 :::::::::::::::::::::V:::::::::::::S:::::::::::::::::::::E:: HVO_0874 :::::::::::::::::::::V:::::::::::::::S:::::::::::::::::::E:: Hbo0665 ::::::C::::::::::::::V:::::::::::::::S:::::::::::::::::::E:: NP0210A ::::::C::::::::::::::L:::::::::::::::::::V:::::::::::::::::: Hut0355 :::::::::I::::::::S::::::M::::::::::IS:::::::::::::::::::::: consensus RLFNGAVNDFPRVETLVLESTYGGRNDYQTDQEDSERKLKEVINETYDRGGKVLIPAFAV #oth ..12..1.1........1......11.....13.1.25.34312122242.2111.21.. rrnAC1310 ::LD::::::::::::::::::::K:::::::S::::V:RD::::S:END:::::::::: Hmu1814 ::LD::::::::::::::::::::K:::::::A::::V::KA:::AH:::::I::::::: Hmu0733 :::E::T:E::::::::::::::::::::::R::A::::L:LVR::H::D:T:VV:SP:: rrnAC0155 :::D::::::::::::::::::::::::::::::::::::QI:QNA:::N::::::T::: VNG0401 :::::::::::::::::M::::::::::::::::::::::R::::::ED::::::::::: HQ1716A :::::::::::::::::::::::::D:::::::::::E:I:::::::::D:::V:::::: hla2364 ::::::::::::::::::::::::::::::::A:::EA::::::::::Q::::V:::::: HVO_0874 ::::::::::::::::::::::::::::::::Q:::ER:I:::::::::::::V:::::: Hbo0665 ::::::::::::::::::::::::::::::::A:::E::ID::::::::::::::::::: NP0210A ::::::::::::::::::::::::::::::::::::ET:::I:R::TTE::::::::::: Hut0355 ::::::::E:::::::::::::::::::::::A:::QR:::I:R:::E:D:S:::::::: consensus GRSQEIMLVLEEAMREGDIPEMPVHLDGMIWEATAIHTTYPEYLRDDLRDRIFHEDENPF #oth .....2.....1...5.2..31.11....11....1..1...1..12.11..12213... rrnAC1310 :::::L:::::::::K::::T:::Y:::::R:::::::A::::::::::Q::LY:::::: Hmu1814 :::::L:::::::::S::::TV::Y:::::R:::::::A::::::::::Q::LY:::::: Hmu0733 :::::L:::::A:::A:::::::IY::::::::::V::::::F::E:::::::D:AD::: rrnAC0155 :::::L:::::::::N:::::::::::::::::::V::::::::::G:Q::::D::K::: VNG0401 :::::M:::::::::::E:::::I::::::::::::::::::::::::::::::S:S::: HQ1716A :::::::::::::::T:E::Q:::::::::::::::::::::::::N:::::::D::::: hla2364 :::::::::::::::N::::::::::::::::::::::::::::::::::::::D::::: HVO_0874 :::::::::::::::S:K:::::::::::::::::::::::::::::::::::::::::: Hbo0665 :::::::::::::::S:K::S::::::::::::::::::::::::::::::::::::::: NP0210A :::::::::::::::::E::TV::::::::::::::::::::::::::::::::D::::: Hut0355 :::::L:::::::::::::::::::::::M::::::::::::::::::::::::D::::: consensus LADQFNHIDGGEEERQDVADGEPCIILSTSGMVTGGPIMSWLRHIGPDPDSTLTFVGYQA #oth ..23.221.2.222.2222.1232.11211..22...11...423131211213111... rrnAC1310 ::E::EQV:::D:M:::I::D::A:::T:::::::::V:::::LL:S:::::MA:::::: Hmu1814 ::E::QQV:::Q:M:::I::D::::::T:::::::::V:::::LL:S:::N:MM:::::: Hmu0733 :::A:EPV:-:DAD:AAL:::::G:V:APD:::::::VH:::E:LAG:A::::AML:::: rrnAC0155 :::R::P::::D:::EEI:::DS:::::::::L::::V::::DQL:::::::::::D::: VNG0401 ::P:::::::::::::A:::DDQ::::::::::S::::::::E::A:::::::::::::: HQ1716A ::EE:::::A::::::A:S::::::V::::::I:::::::::Q:::T::::R:V:::::: hla2364 :::::::::A::D::::::::DE:::I:::::IE:::::::::::::::::N:V:::::: HVO_0874 ::EE:::::::::::::::::DQA::::::::::::::::::::V::::K:R:V:::::: Hbo0665 :::E::::::::D:::::::DG:A::::::::::::::::::::V::::K:R:V:::::: NP0210A ::::::::::::::::E::::G:::V:::::::E::::::::N:::SEEK::M::::::: Hut0355 ::::::::::::::::E:T::::A:V::::::::::::::::E:F:S::::::::::::: consensus QGTLGRRIQNGWDEIPVND-GSG-GRGETLSLEMNVETVDGFSGHADRQGLENFVKTMNP #oth 2....21.13.3.221342344411153314.515212.1........1..13..2..1. rrnAC1310 E:::::Q::R:Q:::TLG::T:::P:A:RV::RL::::::::::::::::::S::E::H: Hmu1814 E:::::Q::R:Q:::TLS::::::P:A:RV::K:EI::::::::::::::::T::E::H: Hmu0733 S:::::::R::::DL:IG::---::-:::V::D:R::S:::::::::::::::::R:::: rrnAC0155 E::::K:::R:I::V::SGS---:::N:KVP:::T::::::::::::::::::::::::: VNG0401 :::::::::S:R:K::MP:SR:::::T:H:Q:N:G:::::::::::::::::D::R:::: HQ1716A :::::::::D::::::I:G:DQL:::S:::T:::D:T::S:::::::::::::::::::: hla2364 :::::::::::::::::DGW:G:::::D::T:Q:GT:V:::::::::::::::::::::: HVO_0874 ::::::::::::::::::GRD:M:::SD::K:K:D::::::::::::::::::::::::: Hbo0665 :::::::::::::::::::RDNV:::SN::Q:K:D:::::::::::::A::::::::::: NP0210A :::::S:::S::::::M::R:N:R:---::K:N::::::::::::::::::M:::R:::: Hut0355 ::::::::::::::::M:N::N:R:::N:::::::::::::::::::::::::::::::: consensus RPEKVLCVHGDESSVQDLSSALYHDYNMRTFAPKNLETFRFV #oth 1...11.....122111...2..133.2..22.1......14 rrnAC1310 ::::I::::::A:TTNQ::::::QKF::::HN::::::::LS Hmu1814 :::::I::::::Q:TNQ::::::QKF::::YN:::::::::: Hmu0733 S::::::::::::AT::::::::::H:L:::S:::::::::: rrnAC0155 ::::I::::::::AT:::::S::::Q:I:::::E:::::::R VNG0401 ::::::::::::::T:::::::::EF:::::::::::::::: HQ1716A ::::I:::::::Q:::::::G::::::L:::::::::::::L hla2364 :::::::::::::::::::::::::::::::::::::::::K HVO_0874 ::::::::::::R::::::::::::::::::::::::::::K Hbo0665 ::::::::::::R:::::::::::N::::::::::::::::R NP0210A ::::::::::::::::::::::::EF:::::::::::::::K Hut0355 ::::::::::::::::::::::::E:::::::::::::::::