|
Pairwise sequence scores | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|
Consensus score | 2820 | hla1865 | HQ2629A | HVO_1604 | Hbo3241 | VNG0502 | NP1666A | Hut0194 | rrnAC3495 | Hmu1041 | Hbo3544 | rrnB0206 |
2346 | hla1865 | 2838 | 2180 | 2302 | 2253 | 2128 | 2068 | 2113 | 2155 | 2188 | 1894 | 1852 |
2235 | HQ2629A | 2180 | 2821 | 2239 | 2318 | 2002 | 1968 | 2059 | 2077 | 2121 | 1865 | 1800 |
2362 | HVO_1604 | 2302 | 2239 | 2831 | 2362 | 2122 | 2050 | 2132 | 2130 | 2186 | 1941 | 1848 |
2337 | Hbo3241 | 2253 | 2318 | 2362 | 2819 | 2051 | 2011 | 2088 | 2124 | 2168 | 1889 | 1839 |
2335 | VNG0502 | 2128 | 2002 | 2122 | 2051 | 2826 | 2077 | 2180 | 2217 | 2220 | 1951 | 1919 |
2376 | NP1666A | 2068 | 1968 | 2050 | 2011 | 2077 | 2818 | 2283 | 2322 | 2290 | 2026 | 1926 |
2435 | Hut0194 | 2113 | 2059 | 2132 | 2088 | 2180 | 2283 | 2820 | 2377 | 2306 | 2060 | 1975 |
2467 | rrnAC3495 | 2155 | 2077 | 2130 | 2124 | 2217 | 2322 | 2377 | 2836 | 2438 | 2060 | 1929 |
2495 | Hmu1041 | 2188 | 2121 | 2186 | 2168 | 2220 | 2290 | 2306 | 2438 | 2957 | 2051 | 1957 |
2125 | Hbo3544 | 1894 | 1865 | 1941 | 1889 | 1951 | 2026 | 2060 | 2060 | 2051 | 2809 | 2105 |
2057 | rrnB0206 | 1852 | 1800 | 1848 | 1839 | 1919 | 1926 | 1975 | 1929 | 1957 | 2105 | 2810 |
388 symbols consensus MTEFSDRVEQVSISGIREVFEAAGEDAINLGLGQPDFPTPDHARQAAVEAIEAGKADAYT #oth .37114.11421.....2...1.11.1....1.....11.2.2.3..32.132.62.2.. hla1865 :PN::::::RI:::::::::::::D::::::::::::::::::::::ID::::::::::: HQ2629A :YS::::::S::::::::::::::::::::::::::::A:A:::D::::::Q::E::::: HVO_1604 ::H::::::RI::::::K::::::::::::::::::::A:::::::::::::::E::G:: Hbo3241 :S:::::I:K:::::::::::::::::::::I:::::AA:E:::R::I:::KD:R::::: VNG0502 ::::::::A::::::::A::::::::::::::::::::::::::::::D:::S:A::G:: NP1666A ::D::::::R::::::::::::::D:::::::::::::::::V:E::I::::::DV:::: Hut0194 :PD::H:::::::::::::::::S::::::::::::::A:E:::E::::::R::D::G:: rrnAC3495 ::A::R::::::::::::::::::::::::::::::::::E:::E::::::Q:::V:::: Hmu1041 :::::R:::::::::::::::::::::::::::::::::::::::::::::Q:::::::: Hbo3544 :SKYAP:::KMD:::::::::G:S::D::::I::::::::E:I:D::LS:V:D:VV:S:: rrnB0206 :SQYAA:::EMD::::::::::::::::::::::::::::E:::E::MS::QD:MG:S:: consensus SNKGTRELREAIAAKHARDNGIDVDPDNIIATAGGSEALHIAIEAHVD------------ #oth 2.1.353.111.221141.22543414311..1.1...1.212...14111111111111 hla1865 E:::::S::::::E::RT:Q:::L::S:V:::::::::::::L::::::::::::::::: HQ2629A E:::MMS:::::::::Q::QN:T:N::E:::::::::::::VM:::I::::::::::::: HVO_1604 G:::LPS::::::E::R::Q:V:L:::DV::::::::::::::::::N:::::::::::: Hbo3241 E:::I:S:::::::::E::Q::ERH::D::::::::::::::M::::G:::::::::::: VNG0502 ::R::AA:VD::VE:::::Q:V::A:AGV:::::::::::L:M::::::::::::::::: NP1666A :::::::::::::::YD:::DFA:::E::V::S:::::::L::::::::::::::::::: Hut0194 :::::L::::::::::::::DL::::G:V:::S:::::::::L::::::::::::::::: rrnAC3495 :::::E::::::::::E:::DLE:::GD::::S:::::::::L::::::::::::::::: Hmu1041 :::::::::::::D:::::::M::::E:V:::S:::::::::L:::::GPGHSPGSDRTQ Hbo3544 G:::ILG:::G:SE:YE::S:LS:::::::::S:A::::::::::::R:::::::::::: rrnB0206 ::::IP::::::SDRY:T:::Q:IPAE:::::::A:::I:V::::::Q:::::::::::: consensus ---AGDEVIIPDPGFVSYDALTHLAGGTPVPVPLRDDLTLDPAAVEEAITDDTAAFVVNS #oth 111413..14.....11.11.24211.2.3212..1...22.121.32..21.32.1... hla1865 ::::::::L:::::::::::::K:T::E:::::::::::I::::I:A::::::V:::::: HQ2629A :::P::::LV::::::::::::R:::::::::::::::::::::I::R::A::::::::: HVO_1604 :::E::::::::::::::::::K::::E::::::::::::::::::D:::E::::::::: Hbo3241 :::S::::::::::::::::::K::D::::::::::::::::::::::::::::::I::: VNG0502 :::P::::LF::::::::::::RM:::N::GL::::::::A:ET::DH:::::::::::: NP1666A :::::E:::F:::::::::::::I:::E:N::S:::::::S::D::A:::::::M::::: Hut0194 ::::DE:::Y::::::::E::::::::::R::E::::::::::D::A::::::::::::: rrnAC3495 :::::Q:::F:::::::::::::::::::R:::::E:::MA:ET:::::::::::::::: Hmu1041 SDN::Q:::F:::::::::::::::::::K:::::::::::::T::::::::::::I::: Hbo3544 :::N:G::::::::::A:EQ:AV::::::K::E::::::::::T::D:::E::DL:I::: rrnB0206 :::P::::LC:::::LA:EQ:VL::::E:KR:E:::::::::::::N::::N:SL:I::: consensus PANPTGAVQSPADMREFARIADEHDVLCISDEVYEHIVFEGEHRSPAEFAETDNVVVVNA #oth .1......1235.211.....1111.3.11.....33..1.112..31.33311.12211 hla1865 :G::::::S:EE:V:::::::::::::::::::::YT::::::Y::M::T:::::::I:S HQ2629A :G::::::S:QT:I:::::::::Y::F::::::::YT::D::FH::LA::DR:::::::S HVO_1604 :G::::::SP:D:IA::::::::::::::::::::YT:::::::::I::::::::::::S Hbo3241 :G::::::SP:E:I:::::::::::::::::::::YT::D::F::::::::::::::::S VNG0502 :::::::::::::::A::::::::::::::::::::::::::::::M:::D::::::::: NP1666A ::::::::::E::::::::::AD:::V:L::::::PF::D:V:::::A:D::G::::::: Hut0194 :::::::::::::::::::::::::::::::::::::::::::::::::::S:::::I:: rrnAC3495 :::::::::::E::::::::::::::::::::::::Q::::::::::::S::G:::I::: Hmu1041 :::::::::::D:::A::::::::::::L::::::::::::::::::::DDGG::::::: Hbo3544 :::::::::TES:::::::::::Y::V:LL::::::::::::::::M:::T:::::Q::: rrnB0206 ::::::::::KR::A:::::::::E:I:L::::::K:::D:::H::::::NS:R:IQAS: consensus ASKLYSMTGWRLGWVTGSSERIERMLRVHQYVQACASAPAQYAAEAALSGPQDPVEEMTA #oth 1..31..........41243.21..1.1...3....1..1.1......3.112315..23 hla1865 ::::F::::::::::Y::E::V:::::::::A::::::::::::::::R:DHGV:D:::: HQ2629A :::::::::::::::L::TS:V:::::::::T::::A::S:F::::::T::::VIT:::D HVO_1604 ::::F::::::::::Y::TR:V:::::::::::::::::::F:::::::::::RI::::E Hbo3241 :::::::::::::::H:::R:::::V:A:::::::::::::F::::::T:::GI:D:::D VNG0502 C::T:::::::::::AA:ER:A::::::::::::::::::::::::::::::GV:D::V: NP1666A :::A:::::::::::::T::::D::::::::A::::::::::::::::::::E:::::RS Hut0194 :::A::::::::::::::D::::::::::::G:::::::::::::::::::::R:G::VD rrnAC3495 C::A:::::::::::::ATD:::::::::::A::::::::::::::::T:::E::A::RE Hmu1041 C::S:::::::::::::A:D:::::::::::A:::::::::F:::::::::::V::::R: Hbo3544 C::S::::::::::::A:DD::::::::::::::::::::::::::::K:::E:::::VS rrnB0206 C::T:::::::::::AA:A::::::::::::::::::::S::::::::T:::E::R::VS consensus AFEERRDVLLDGLEDIGLDVPTPKGAFYAMPEVPDGWVDECIDRGVVVVPGEAFGEHGAG #oth 2.34..12211.1421.142.3.4....2..5..1.134122111.11...31..36.6. hla1865 S::R:::L::::FDE::I:C:::Q:::::::R::E:F::::L::::::::::::::::R: HQ2629A S::R:::LIV:::T::::E::::R::::C::K::::F:M::LE:::II:::D:::AN:S: HVO_1604 T:R::::LVVE:::::::T::S:G::::V:::::E:F:::::::::II::::::::::H: Hbo3241 S:QR:::IVV::::::::T:::::::::::::::::F::::LE:::I::::::::AN:D: VNG0502 :::A::::::::::AM:::::::G:::::::T:::::I::VV:::::::::S:::D:::: NP1666A :::T:::::V:::::M::S::::::::::::::::::T::V::::::::::::::DA::: Hut0194 ::::::N::::::::M::QT::::::::::::::E:::E:V::::::::::A:::DG:E: rrnAC3495 ::K::::::::::NEM:::C:::::::::::K::::::::V::::::::::D:::::::: Hmu1041 :::Q::::::::::::::EC:::E:::::::K::::F:::::E::::::::::::AQ::: Hbo3544 :::T:::::::::D::::ET:R:E:::::::S::E::AS:VL:N::I::::DV:::R::: rrnB0206 ::::::N::::::A:::::T:V:::::::::H:::::TQKML:ND:I::::::::PS:K: consensus YARISYATDEETLKEALDVMAEATAAVR #oth 3..1..112323.31.121.65125135 hla1865 H:::::::::SE:R:::::::D:YE:AK HQ2629A :::L:::::::S:R::::I:QQ:YT::S HVO_1604 :::L:::::T:S:R::IEI:G::YD::V Hbo3241 :::L::::::AS:H::::I::::YD::V VNG0502 T::::::::MA::RD:I:::RA:::::Q NP1666A H::::::V:V::::D::E::G:::::L: Hut0194 :::::::::M:Q::::I:::SA:::::: rrnAC3495 :::::::::M:::E::I:I::D::::L: Hmu1041 ::::::PV:V:::::::SI:D::L:::Q Hbo3544 ::::::::NV:::::::E::KSV:RSF- rrnB0206 Q:::::::STAE:::::E::RTV:NSL-