|
Pairwise sequence scores | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|
Consensus score | 2827 | hla1631 | HVO_2384 | HQ3172A | Hbo2085 | NP4504A | VNG1663 | Hut0265 | rrnAC1525 | Hmu2088 | Hbo2885 | NP2894A |
2176 | hla1631 | 3848 | 1977 | 1983 | 2096 | 1802 | 1718 | 1829 | 1826 | 1805 | 991 | 969 |
2272 | HVO_2384 | 1977 | 2823 | 1989 | 2143 | 1938 | 1818 | 1921 | 1956 | 1858 | 978 | 992 |
2178 | HQ3172A | 1983 | 1989 | 2818 | 2178 | 1777 | 1723 | 1807 | 1851 | 1779 | 998 | 929 |
2284 | Hbo2085 | 2096 | 2143 | 2178 | 2804 | 1873 | 1723 | 1858 | 1897 | 1801 | 986 | 948 |
2162 | NP4504A | 1802 | 1938 | 1777 | 1873 | 2832 | 1872 | 1970 | 1962 | 1899 | 958 | 943 |
2052 | VNG1663 | 1718 | 1818 | 1723 | 1723 | 1872 | 2803 | 1930 | 2004 | 1840 | 936 | 974 |
2270 | Hut0265 | 1829 | 1921 | 1807 | 1858 | 1970 | 1930 | 2798 | 2234 | 2148 | 944 | 932 |
2281 | rrnAC1525 | 1826 | 1956 | 1851 | 1897 | 1962 | 2004 | 2234 | 2803 | 2199 | 1023 | 978 |
2227 | Hmu2088 | 1805 | 1858 | 1779 | 1801 | 1899 | 1840 | 2148 | 2199 | 2660 | 933 | 931 |
1166 | Hbo2885 | 991 | 978 | 998 | 986 | 958 | 936 | 944 | 1023 | 933 | 3061 | 2080 |
1134 | NP2894A | 969 | 992 | 929 | 948 | 943 | 974 | 932 | 978 | 931 | 2080 | 3054 |
555 symbols consensus ------------------------------------------------------------ #oth 111111111111111111111111111111111111111111111111111111111111 hla1631 MAERVDIVVGGLPPLPSRVDLRGRGGLVANPPELDRVEPVALADIRQSSGVDADGDVVDV HVO_2384 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: HQ3172A :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: Hbo2085 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP4504A :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: VNG1663 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: Hut0265 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: rrnAC1525 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: Hmu2088 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: Hbo2885 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP2894A :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: consensus ------------------------------------------------------------ #oth 111111111111111111111111111111111111111111111111111111111111 hla1631 GQIRVLDAEAHEGVPGGLPEGVERSPTDEDSVLIEDDGVVHALLSVGNRQKPFTGWRSPS HVO_2384 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: HQ3172A :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: Hbo2085 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP4504A :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: VNG1663 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: Hut0265 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: rrnAC1525 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: Hmu2088 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: Hbo2885 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP2894A :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: consensus -------------------MDIADIATPDYVEVDADERLGKVRSIFERENPKGIIVTEDG #oth 111111111111111111113153124622432334422312212.122322.1213432 hla1631 DRHRPRTFNTRRVQPTDWT:N:V:::V:E:::::VS:::A:::::::::::::::::::: HVO_2384 :::::::::::::::::::::::::::::FI:::VN::::::::::::::::::::QD:: HQ3172A ::::::::::::::::::::::TN:::::::::R::K::::I::::D::R:N:::::KE: Hbo2085 ::::::::::::::::::::N::::::::F::::::K:::::::::::::SR:V:::N:: NP4504A ::::::::::::::::::::N::::::K::AQ::::::::::::V::QD:::::V::N:: VNG1663 ::::::::::::::::::::::S:::AN:::::::EQ:::::::L::::::::V::::A: Hut0265 :::::::::::::::::::::::::::R::I:::::::::::::::::::::::::::G: rrnAC1525 :::::::::::::::::::::::::::REF:::::NK::::::::::::::::::::::D Hmu2088 :::::::::::::::::::----------------------:::::::::::::VI:::: Hbo2885 ::::::::::::::::::::E:L::VSEE:EA:SPET:VS:LVGV:DDPTV::VL:-Q:T NP2894A ::::::::::::::::::::::SA:VSTEFE:LSP:TPVS:LTGV:DDPDV::VV:SD:: consensus EYAGVITEKQLVQSHVEDDTKAAALMKS-APKVDRHEDVREVARMLVEGDTKIAPVFEGG #oth 425.111211.53.1331331252224311.42513222.12..2111113321.12.23 hla1631 :::::VG::::MR:RM:::::VS:V::::::S::::::L::T::L:::::V:::::Y::E HVO_2384 ::::::G::::IN:::::N::::::T:A:V::I::::N::::::::::::::V:::Y::E HQ3172A G:N::VG:::::R:RMG::::VDVVT::::::L:::::I::A::::::::VNV::::::N Hbo2085 ::::::G:::::R:RM::::::S:V:::::::I::::::::A:::::::::R:::AY::E NP4504A D:E:I:::R::L:::::::A::NV:TR:NV:Q:N:EDG::::::::::::::V:::::H: VNG1663 A:D:::::R::I:::IG:::RV::MVTD:::::S:T:::::T:::::::G::::::::A: Hut0265 :::::::Q:E::::::::QA::R:::QH::::IK:TG::::T::V:::SG::V:::::AN rrnAC1525 D:T::::Q::::::::::NA::G:MTR::::::E:TD:::::::V::::GV:L:::::A: Hmu2088 A::::::Q::::::::::NA::G:M:R::::::E::D:::::::V::::GA::::::::: Hbo2885 QFE::V:RR::AT:RHPP:Q:VGS:VWH:V:RLAPD::::K:::LMIDS:SQLL:::::D NP2894A DLV::V:RR::TT::HSPEE:L:S:VWH:::T:APD:N::::::LMIDSG:QLL::V::D consensus KLWGVVTGDDILEAVLDNLDALTVEDIYTEDVVTVEEDTHVGQAINRLREHGISRLPVV- #oth 432.1115231.4..242.1122.31241421133724254.412241.2141212.121 hla1631 ::Y:I::V:Q:::::::S:::I::GQ:A::::IGIN:KDT::S:::::::N::::::AL: HVO_2384 :QY:II:Q:A:::::::::::::::Q:::D:::::G:RD:L:::::::::::V::::::: HQ3172A Q:Y:I:::E:::Q:::E::::IS::::F:D:::D:A:QSPL:E:::K::::S:::V:::E Hbo2085 ::Y:II::N::::::::::::IS::::L:K::::IG:KS:::::::::::N:::::::T: NP4504A D::::I:DNA::N:::::::V:::DQ:H::E:::LR::DTL:K:::H:::NA:::::::: VNG1663 S::::I:E:A::D:::A:::::D:R:::::H::::D::DSM:RV::L::::::::::::: Hut0265 :::::I:D::::S::I:::::::::Q:F:G::::AT:::E:::V::K::::::::V::L: rrnAC1525 E:::I::E::::D:::::::::S::::::R::I::S:::N:::VV:L::K::::::::L: Hmu2088 S:::::::::::::::E::::::::Q:::K::::IT:E::::::::L::K:S:::I::L: Hbo2885 DVV:::SA:::::::QPF::VA::G:V::DEL:S::SE:TA:E:VT:F:::H:TH::::: NP2894A SMV::::A:EL::::QSF:E:A::G:A:S:ELISI:PQ:SF:K:LHSF:DNR:AH::::: consensus -DDDGKLTGIVTTHDIVDFVVRDMDRQGRGD-------------------------RSGD #oth 13142713.22122.33134.14642335111212121111122221122111211.3.1 hla1631 ::E::H:V:V:::N:::E:::::QE:::S::::::::::::::::::::::::::::A:: HVO_2384 :N:E:R:E::L::Y:L:E:M:::EG:::KQ:::::::::::::::::::::::::::R:: HQ3172A Q:ESSS::::L:::::I::::::D:::::::::::::::::::::::::::::::::::: Hbo2085 ::E::::::VL:::::IE:S::NA:::::::::::::::::::::::::::::::::R:: NP4504A :N:N::::::I:::::A::A::K::::RT::::::::::::::::::::::::::::R:: VNG1663 :::A:L:S::::RY:::::::::TEKTTV::::::::::::::::::::::::::::::E Hut0265 :N:::::::M::R:::::V::::::KATT:E::::::::::::::::::::::::::A:: rrnAC1525 :G::DG:::M::R:::::V:::::NKTT:::::::::::::::::::::::::::::::E Hmu2088 :::::D:S:M::::::::V:::::NKAT:::::::::::::::::::::::::::::::E Hbo2885 :-E:DAAV::LSLY:M::LT:HSGTQSQG::ATGADAFGG::GGTAGRTHRGGYGA:E:E NP2894A :-:E:SAV:V:SLY:VT:IA::ATTQSQG::AGGTDPFGGEISSSSGRARRGGFGA:E:E consensus IDRMLDLPVYDVMSSPVRTATPDESVEDAVERMFENDISGLVVTPDDDDT-VAGILTKTD #oth 52.21.2..2.4.32.16.3443333321.52.123243111.1244626624.22.... hla1631 ::::::I::::I:::::V:::A::TA:AV:::::D:NV:::::::KGA:::I::MV:::: HVO_2384 T::::::::::L:T::A:::::::::R:::A::L:H::A::::::A:::GE:L:VV:::: HQ3172A L::::::::::L::A::I::Q:N:P:S:::K:::D:::::V::::AAG::TIE:V::::: Hbo2085 L::::::::::L:::::I::::G:KIDTV:S:::D:::E:V::::T:S::E:L::::::: NP4504A TE:::::::::A:N:::Q:ISAEA::R::::::::::FG::::::::N:EF::::::::: VNG1663 :E:L:::::S:E:T:::K::SF:D::R:::DD:LAH:Y::VI::::::ERA:G::::::: Hut0265 V::V:::::::::::::A:T:I::::::::R::L:::YA::::::ER::SL::::I:::: rrnAC1525 :E:V::M::::::::::E::KLGD::::::A::L:::FA::::::E::::H::::::::: Hmu2088 N::V:::::::I:N:::A:TSL:G::R::::::L:::FA:::::::H::SL::::V:::: Hbo2885 LA:LF::::R:::V:::::IR:::TL:T:::A:::T:G:S:::VE::CPV:--::V:::: NP2894A R::L:::::R:::VT::::V::::TL::::AA::DAGV:S::::R:GEPD:--::::::: consensus VLRALTFTEEEHMDVQITNIGLLD-TLSRDDIRESIEAVADKYQDMQVLHAHVRFHEHKE #oth 1.11.121222421..21134.1212421441236136122114414.31.111132.2. hla1631 :::::::::QDS:::::::VA:::::T::EH:V::::Q::S::A::H:I:::::L:A::: HVO_2384 ::::::Y::::Q::::V:::::IE:::::A::NSA:TE::::::R:S::::::::::::: HQ3172A :::::::::::S:::::::::::E:::T:TE:V:::T::V::::Q:::::::::L::::: Hbo2085 :::::::::::R:::::::::::E:::T::SVVD::TK:V::::Q:::H::::::::::: NP4504A ::::::Y::::S:::::::::::::GI::EAV::::TE:::::K::::H::::::T:::: VNG1663 :::::SY:::::L:::::::D::::::::QEV::R::N:VA::G::D:H:::::LSK::: Hut0265 :::::S::::::::::::::N::::::::Q:V:VG::D::::::A:::Q::::::Q:::: rrnAC1525 ::::::Y:::::::::::::K:::::I::A:::SD::T:::::GA:::Q::::::::::: Hmu2088 ::::::::::::::::::::N:::N:I:::::::E:GD::S:::::::Q::::::::::: Hbo2885 I:DS::WETGGNRA::VYGTD::G:DV:Y:::VSMV::FD::DHG:N::D:K:HL:::D: NP2894A I:D:::WEA:GNRA::LYGSD::::DMNY:EVVSM:D:FD:MDGGTN::D:KIHL:::N: consensus KLRGTPLIQCQIRLRTNKGQVAGSGEGYGAEHAFNVALDKLERNVLELKGVRADEEYRGQ #oth 22.....33211..1.26.15311.....1431141.3.211.21116.13542121411 hla1631 :::::::::::::::::E:::G::::::::::::H::::::::::::I:::N:::::::: HVO_2384 ::::::::::::::::SH::L:::::::::::::H::::::::::::V::FE:::R:::: HQ3172A :::::::M::::::::SL:::::::::::::N::Y::::::::::::M:::N:::R:::: Hbo2085 :::::::::S:V::::SH::::::::::::::::H::::::::::::::::N:::K:Q:: NP4504A RM::::::Y::::::::R::I::::::::SKT::R::V::::::::::::I::::::K:: VNG1663 :::::::::S::::::::::I::T::::::DNS:H:::::::::::::::IEH::::E:: Hut0265 ::::::::N::::::::::::::T:::::SKT:::::::::Q:::::R::::S::::::: rrnAC1525 ::::::::::::::::::::A::::::::::T:::::::::::::::::::Q:::::::: Hmu2088 ::::::::::::::::::::A::::::::SDT:::::::::Q:::::M:::::::::::: Hbo2885 :R:::::VLAR:::Y:DS:LYIA:::::::RQ:L:E:C:IV::QIRDE:TYGRSKKHPDE NP2894A TR:::::LLAR:::Y:DG:LFMA:::::::S::LGE:K:T:::RIRDN:TYAQTKKHPDE consensus LL--RKLGEL----- #oth 331211112211211 hla1631 ::::::::::::::: HVO_2384 :::::::N::::::: HQ3172A :I::::::::::::: Hbo2085 VM::::::D:::::: NP4504A :::::::N::::::: VNG1663 :::::::ND:::::: Hut0265 ::::::::::::::: rrnAC1525 ::::::::::::::: Hmu2088 ::::::::::::::: Hbo2885 AFWEKRF:WILEEAA NP2894A EFWDKRF:WWLES::