|
Pairwise sequence scores | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Consensus score | 1776 | VNG0880 | hla2688 | HVO_1562 | Hbo3488 | HQ2661A | Hmu0626 | rrnAC0442 | NP3472A | rrnAC1772 | Hut0321 |
1161 | VNG0880 | 1899 | 893 | 892 | 946 | 970 | 993 | 1070 | 1067 | 919 | 892 |
1205 | hla2688 | 893 | 1779 | 1247 | 1273 | 1264 | 940 | 1000 | 957 | 858 | 887 |
1323 | HVO_1562 | 892 | 1247 | 1773 | 1427 | 1460 | 969 | 963 | 950 | 921 | 905 |
1365 | Hbo3488 | 946 | 1273 | 1427 | 1775 | 1500 | 945 | 1017 | 997 | 920 | 950 |
1396 | HQ2661A | 970 | 1264 | 1460 | 1500 | 1785 | 967 | 1045 | 1004 | 937 | 932 |
1249 | Hmu0626 | 993 | 940 | 969 | 945 | 967 | 1695 | 1225 | 1195 | 1159 | 1168 |
1304 | rrnAC0442 | 1070 | 1000 | 963 | 1017 | 1045 | 1225 | 1786 | 1380 | 1130 | 1164 |
1334 | NP3472A | 1067 | 957 | 950 | 997 | 1004 | 1195 | 1380 | 1771 | 1147 | 1148 |
1175 | rrnAC1772 | 919 | 858 | 921 | 920 | 937 | 1159 | 1130 | 1147 | 1703 | 1229 |
1210 | Hut0321 | 892 | 887 | 905 | 950 | 932 | 1168 | 1164 | 1148 | 1229 | 1726 |
257 symbols consensus ------------MRTPTN---SGRPDALNGDRSDPYEPELGEFPNADRRAAD--GDNVTK #oth 111111111111.443643463434556445554213..21234671634544142514. VNG0880 MLLSVPGWYQVV:FN:N:GSEFA:NR:RLD:TPN:::::V:SL:EG::SQ:G::S:T:N: hla2688 :::::::::::::::::-GDL:DG:AEEL:RDQPVFG::I:::EHSE::::QAD:EGEM: HVO_1562 :::::::::::::::::HDEF:::L:S::::::NVFG::::::S::::::DEL:::KE:: Hbo3488 :::::::::::::::::SDDT:::L:P::::H:GVFS:::::::::EQ::GES:TAKE:: HQ2661A ::::::::::::::::M:NDI:::::S:::::::VFS::::::::::D::N:I:::ME:: Hmu0626 :::::::::::::KN---:::---------LDAN::::::AS:DDM:AD:G:::::A:A: rrnAC0442 ::::::::::::::DM:PGPDLSG:Q:ADEFQ::::A::V::L:--EQS:Q:::SEK:N: NP3472A ::::::::::::::Q:DS:::-SL:RTGQDHTLS::::::::V:SN:LSM::::L:::N: rrnAC1772 :::::::::::::HD:E::::---------RLT:A::::V:NL::E:SGRDE::-E::V: Hut0321 :::::::::::::NPDL::::---MNPHDSG:T:::A:::::IATDEGD---:::E:::: consensus TGTTTVGIKTEDGVVIATDMRASLGGRFVSNKNVQKVEEIHPTAALTIVGSVGGAQSFIR #oth ....11.13.42.122.1.1...1.1321.1.3.1...111.31.1112...11..11.1 VNG0880 ::::I::LT:Q:::LM:S:::::::::VI:::::::::::Q:N:::S:S::::::::::: hla2688 ::::::::::A::::M::::::::::-M::S:D::::::V::RG::::A:::SA::NL:S HVO_1562 :::::::::::E:::L:::::::M:-YM::S:D::::::::::G::::A:::SA:::L:S Hbo3488 :::::::L:::::::L:::::::::-HM::S::::::::::::G::::A:::SA:::L:: HQ2661A :::::::L::Q::T:L:::::::::-:M::S:D::::::::::G::::A:::SA:::L:S Hmu0626 :::::I::T:DG::::::::::::::::::::S:::::Q:::S::::L:::::::::::: rrnAC0442 :::::I::S:S::::::::::::::::::::::::::::::::::::L:::::::::::: NP3472A :::::I::S:AE::::::::::::::::::::::::::Q:::S::::L:::::::::::: rrnAC1772 :::::::LS:::::I::::R::::::::::::Q:::::Q::::::M:L:::::::::::: Hut0321 :::::::LA::E:::::::R::::::::::::::V::::::::::M:L:::::::::::: consensus SLRAEVRLYEARRGEDMSINALSTLAGNFARGGPFFAINPILGGVDDEGSHVYSIDPAGG #oth 1111.33...3..1122.16..1.131.11.1.212313..1..1.12.4.1112.11.1 VNG0880 :::::AN::::::::Y:::D::::M:S:LL::::::RVV::::::::D:G::F:L::::S hla2688 T:K::TS:::T:::K:::ME:::::T::LL:S:A:YIVQ::::::::::::I::::AL:: HVO_1562 ::::::::::::::::::MQ:::::V:::L:S:G:YVVQ:::::::ET:P:I:::::::S Hbo3488 :I::::::::S:::::::MQ:::::L:::L:S:A:YIVQ:::::F::::A:I:::::::S HQ2661A :I::::::::::::::::ME:::::L:::L:S:G::IVQ::::::::D:P:I:::::::S Hmu0626 T::S:SD:::V::::P:::S::A:::::::::::::::::::::::E::::::::::::: rrnAC0442 T:::::N:::::::::I:MK:::::::::::::::::::::::::::D:H:::::::::: NP3472A ::::::D:::::::::I:::::A::::::::::::::::::::::::::H:::::::::: rrnAC1772 :::::AD:::V::D:PL::H::A:::::::::::Y::::::V::::E:::::::V::::: Hut0321 T::S:AS:::T::D:P::::::A::::::::::::L::H::::::::::::::T:::::: consensus VMEDDYTVTGSGSQYALGVLEQEYEDDLSIEEAKEVAARAIKAAVERDTASGNGINVAVV #oth 33212.111...331.3.21.32144121531.253.362151.3...11....242241 VNG0880 S:S:T::AQ:::MP::::::::::SE::TMAD:EQ:::H:V:S:S::::::::::HITKI hla2688 TT:EE:::::::::::::::::::D::VTVD:::TM::K::QS:::::L::::::::::: HVO_1562 IL:EE::::::::::::::::::F::G:::::::G::TK::RS:::::L:::::::I::: Hbo3488 IL:EE:::::::::::::::::::SN::::::::TT::::::S:::::L::::::::C:: HQ2661A II:EE:::::::::::::::::Q:NE::::::::T::::S:ES:::::L::::::::C:: Hmu0626 ::::::::::::M:V:H:K::DR:H::::M:::E:L:VE:VY::T::::G::::VY::T: rrnAC0442 ::K:::::::::LTV:Y:T::DR::E:MTN::::::::AS::::A::::G:::::YL:D: NP3472A ::K:::::::::LTV:Y:T::R:::::MTN::::R:::SG:::::::::G::::VFL:T: rrnAC1772 :L::::::::::TMV:T:TI:GQ:DHGM:LS::RDL:I::VN::A::::G::::VVL:EI Hut0321 ::::::A:::::M:V:Y:TI:G:::S:::T:::::L:TN:VQ::S::::G::::LVI:EI consensus TDDGVEITGHKDFEDLL #oth .4111216424222423 VNG0880 :H::LTTV:::E:DA:: hla2688 :::::D::RY:::D::: HVO_1562 :E:::D:QR:QN::G:E Hbo3488 :E::::::Q::::::V: HQ2661A :E::::::Q:E:::E:V Hmu0626 :G:::D:::YD:::GAR rrnAC0442 :A:::D:N:Y-::DE:: NP3472A ::ED:::K:::::DEV: rrnAC1772 ::E::::DAFD:Y:SAE Hut0321 ::E::::EEFD:LA:A: