|
Pairwise sequence scores | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
Consensus score | 4534 | VNG2476 | HQ3436A | hla1056 | HVO_0099 | Hbo1397 | NP0898A | Hut1708 | rrnAC2901 | Hmu2665 |
3092 | VNG2476 | 4216 | 2549 | 2758 | 2835 | 2787 | 2610 | 2587 | 2040 | 2715 |
3344 | HQ3436A | 2549 | 4479 | 2934 | 3169 | 3282 | 2824 | 2758 | 2078 | 2824 |
3638 | hla1056 | 2758 | 2934 | 4974 | 3405 | 3359 | 3196 | 2911 | 2211 | 3071 |
3813 | HVO_0099 | 2835 | 3169 | 3405 | 4914 | 3834 | 3176 | 3096 | 2275 | 3194 |
3856 | Hbo1397 | 2787 | 3282 | 3359 | 3834 | 4836 | 3239 | 3082 | 2269 | 3187 |
3637 | NP0898A | 2610 | 2824 | 3196 | 3176 | 3239 | 4608 | 3127 | 2347 | 3232 |
3421 | Hut1708 | 2587 | 2758 | 2911 | 3096 | 3082 | 3127 | 4555 | 2245 | 3325 |
2552 | rrnAC2901 | 2040 | 2078 | 2211 | 2275 | 2269 | 2347 | 2245 | 3340 | 2506 |
3596 | Hmu2665 | 2715 | 2824 | 3071 | 3194 | 3187 | 3232 | 3325 | 2506 | 4566 |
654 symbols consensus ---VDPSRI--EFPAPSFRGAQEQALADIRDAFAAGNDVVLVRAPTGSGKSLLARAIAGC #oth 111211311643111122113134124211211222121111111111111111121214 VNG2476 :::------::----------------------------------------------M:: HQ3436A :::------::---------M:AE:IS::::::::::S:::::::::::::::::::::G hla1056 VAV:::D::PA::::::::::::::::::::::::D:::::::::::::::::::::M:A HVO_0099 :::::::::IDS:::::::::::R::R:::::::D::::::::::::::::::::::::S Hbo1397 ::::::D::LPS:::::Y::::::::C::::::::::::::::::::::::::::S:::A NP0898A :::M:::::VA:::::::::::Q:::::::A::E:::::::::::::::::::::::::: Hut1708 :::::::::ESA:::::Y::N::D::RR::A::E:::::::::::::::::::::::::: rrnAC2901 :::------::------------------------------------------------- Hmu2665 ::::::A::FD:::::EY::N::E:::::::::::::::::::::::::::::::::::: consensus ARTADEAKPSDATGAYYTTPQVSQLDDVAADDLLDDLSIIRGKSNYTCILPGETDTPVDR #oth 223563362542332111111111211123131132253111131151124113411132 VNG2476 ::R:AD:D::::V:::::::::::::::::::::EEFKL::::::::::::::EA::::: HQ3436A ::::TD::::::INS::::::::::::::::P:::::N::::::::::::N:::E::::: hla1056 SA:V::TA::E:::::::::::::I:::E::::::::AV:::::::D::::::H::::N: HVO_0099 :A:V::TS:AQ::D:::::::::::::::E::::S::K::::::::N::IR::E:::::: Hbo1397 :::TE::::AQ::D:::::::::::::::E:E::E:::::::::::::::N::::::::: NP0898A ::QDG:GP:GL::::::::::::::::::G::::::::V::::P::S:::::::T:::NQ Hut1708 ::QGSQ:SAT::I::::::::::::::::::P::::::::::::::K:::S:::::::TQ rrnAC2901 ------------------------------------------------------------ Hmu2665 ::::G::GAEEVID:::::::::::::::E:P::S::EV::::N::D::::::::::::Q consensus APCARERGFDCSVRHRCPYFSDRAIASNRRIAAMTLAYFMQTAGSDVFRKRDVVVIDEAH #oth 111213332115121111112112212436411.......1....1..15...1.1.... VNG2476 ::::::::Y::A:K::::::A::::::S:AF:::::::::R::::E:::::::C:::::: HQ3436A ::::::K:Y::::::::::::::::::::::::::::::::::::::::R:::::::::: hla1056 :::V:QQ::::::K:::::::::::::GN:Y:::::::::R::::E:::::::::::::: HVO_0099 :::::K:::::::::::::::::::::::Q:::::::::::::::::::::::::V:::: Hbo1397 :::::QK::::T:::::::::::::::::K:::::::::::::::::::Q:::::::::: NP0898A :::::::::::P::::::::A:::T::ENP:::::::::::::::E::GE:::::V:::: Hut1708 :::::::E:::Q:K:::::::::S::A:QS::::::::::::::::::GT:::::::::: rrnAC2901 ---------------------------------:::::::::::::::G::::::::::: Hmu2665 :::::::K:::Q:K:::::::::::::::PV:::::::::::::::::GP:::::::::: consensus GLAEWAEMYATIDLSPNTVPVWDDIRVPDV--------DDLERAARFAERLLDVCERRKD #oth ..21......112.62621.2.22441143221111341332324311351753232343 VNG2476 ::::::::::::::DEQR::::E:V:::SG::::::LDG:P::T:D::DH:QG:::GV:: HQ3436A ::P::::::::VN:QS::I:I::::T:::LTA::::ES:P:D:TI::::TVIEA:K:AT: hla1056 ::::::::::::E:::GR:::::EVG::::AADAGPEE:A:D:T::::AS:R:TAK:A:: HVO_0099 ::::::::::::::K:R::::::::G::::AA::::AG:PV:::S::::T:VG::K:E:: Hbo1397 ::::::::::::::N:::::::::VG::N:TT::::AD:P:::TV::::A::Q::SNA:: NP0898A ::::::::::::E:::S::::::AC:P::::::::::::GIADVDGY::::::::S::QT Hut1708 ::G:::::::A:::A:D::::::ARPP:EI::::::::::V:T::DY:AG:SR::D::LT rrnAC2901 ::G:::::::::::::QSI:M:N::D:::I:::::::::G:DE:VA:T::VEHLA:::VK Hmu2665 ::GD::::::::E:G:E:::::E:T:PQA:::::::::::::D::GY:Q::A::G:::VQ consensus ELRGRAELTPEEAARRDRLQELRSELQWFIEDYRDPESPTTWVVDQPDG------EGGPV #oth 2.3525..3421112..1.321141.6..42132.32.2.1..2.152211111122553 VNG2476 ::L:QD:::T:AV:::::::::IA::D:::::::::::A::::::ADE-::::::::--: HQ3436A S:IN:D::::T:::H::::::I::::::::S:A:::Q::::::I::D:-::::::TNND: hla1056 ::T::P::DR::V:::::::::I:::G::L:::::SQ::::::::::::::::::::SAL HVO_0099 ::LTKS::M:::::::::::::IG::N::V::::::Q:::::::::H::::::::::S:I Hbo1397 ::LTKS:::::::S::::::::::::K:::::::::::::::::::FG:::::::::E:I NP0898A ::::::::::D:::E::::A:::RD::::LD:RK:DD:::V::A::S:RGTRKDPR::A: Hut1708 D::AQV::E:::::E::::E::::D:T::Q:AV:::D:::::::::::::::::::::RT rrnAC2901 :::KK::::G::V:E::S:NT::QD:G::R:::T:T::A:::::::A:::::::::HA:: Hmu2665 :::QQE:::A::V:E::::NK::QD:S::V::::::::V:::::::::::::::::::S: consensus TIKPLDPARYLKHTVWDRGNKFALLSATILNKEAFCRGVGLDPSNVALVDVEHTFPVENR #oth 13..11.111.3....2.1111........2.3...121..1.34....113....121. VNG2476 ::::M::E:::S::::::A::H::::::::::A::::S::::::T::::::::::::A:: HQ3436A A::::::::::S::::N:::::::::::::::N::::::::::AE::::::D:::::A:: hla1056 A::::::::::Q::::::::::::::::::S::::::::::N:A::::::::::::LSH: HVO_0099 A:::::::K:::::::::::::::::::::::A::::S::::::K::::::::::::::: Hbo1397 :A::::::::::::::::::::::::::::::D::::::::::::::::::::::::::: NP0898A :V:::::::::H::::::::R:::::::::D:::::::A::N:DT::::::P:::::::: Hut1708 :F:::N:E:F:S::::::::::::::::::::D:::ASA::::GR:::::L::::::::: rrnAC2901 ::::MN:E::::::::::::R:::::::::::::::AN:::::::::::E:G:::::::: Hmu2665 :::::::EK:::::::G::HRH::::::::::::::AN:::::D:::::::G::::::H: consensus PLYDVTQGKMTYEHRDETLPKIARTVVRLMAAHPDEKGLIHCHSYAIQEQLRERLAEFGV #oth ..1..11.1...12.23.2.221232113.15.21.1.11.1...1.145.442.433.1 VNG2476 :::::::::::::N:AQ::::L:D::::V::T::::::IV:A:::D:A:K:AA:::DA:: HQ3436A ::::::C:::::NE::::::AVT:MLI:::::::::::::::::::::SS::R::::L:: hla1056 ::::::::S:::::::::V:::::LI:::::E:::::::::A:::D:AGR:T:L:G:::: HVO_0099 ::::::::::::::::::::::::L::::::K::::::::::::::::AE::R::::M:L Hbo1397 ::::::::::::::::::I:::::LL:::::K:::::::V::::::::SE::K:::QL:L NP0898A :::::::::::::::E:::::L:::::::::::G:::::::A:::::AD::::L:S:::: Hut1708 ::V::::::::::E::A:I::V:E:L:S:::R::E:P::V::::::::DA:ADE:DAL:: rrnAC2901 :::::A::::::::::D:::D::::I::I::R:T:::::::::::::::::K:L:DD::: Hmu2665 :::::::::::::::E::::::::I:::A:QH:::::::V:::::::A:::D:L:VD::: consensus GARVRGHDRDDRDAELAAWKASDDPDVFLSVKMEEALDLNGDLCRWQVLCKAPYLNTNDS #oth 24.213..433.123.43.12114121.21.1.......51.11...12....12..2.. VNG2476 :D:::T::A:T:::::ER:::::::E::VA:::::::::AH::G:::::::::F:::::: HQ3436A ES:IQT::TT:::ES:Q::LST:S::I::::T:::::::Q::::::::I::::::::T:: hla1056 A::::R:::AN::::::::::::::E::V::::::::::K::::::::V:::::R::::: HVO_0099 :N::::::::::N:::ET:::T:R:E:::::::::::::::::::::::::::::::::: Hbo1397 :G:I::::KAN:::::ET::::SGA::::::::::::::K::::::::I::::::::::: NP0898A :G::::::::N:::A::G::R:::::::I:::::::::::::Y:::::::::::P::::: Hut1708 :D:::S::SE:::GQ:::::R::::T:::::::::::::D:::::::L::::::P::R:: rrnAC2901 :::::T::KEG::GA:S:::R::N:::::::::::::::E::::::::::::::P::R:: Hmu2665 :S:L:S::SE:::GQ:T:::R::::::::::::::::::E::::::::I:::::P::R:: consensus RVARRLEDGQWAWYYRTALRTVIQACGRVVRAPDDYGATYLADSSLLDLFDRARGDMPDW #oth ..12..2.12.3..2.3..1.1...1..1..1.1.1.3..2..3.1.21.2212621.4. VNG2476 :::A::A::::::::::::Q:I::::::::::::::::::I::::V::V:E:::::::P: HQ3436A ::S:::S::K:S::R:V::Q::::::::I::S:::H:S:::::::::T::NN::NE::A: hla1056 ::::::A:D:::::H::::::::::::::::::::::::::::D:::::::::KA:T:P: HVO_0099 ::::::::::::::R:A::::::::::::::::::::D::V::::::Q:::KT:T::::: Hbo1397 :::Q:::::::S::R:A::::::::::::::::::::::::::::::Q::::T:SE::E: NP0898A :::::::::::N:::::::::::::::::::S:::::::::::T::::::E::::A::S: Hut1708 :::::::::D::::::S::::::::A::I::S:E:H:V:::::A::::::::::T:::E: rrnAC2901 ::::::::D::G:::::::::::::::::::::::H:::::::T::::::E::DH::::: Hmu2665 :::Q:::::::G:::::::::::::::::::::::H::::::::::::::E:::V::::: consensus FAEQVDRMSTPDLPEFDPAAALG---------------------G---S-G-SGSGSSRG #oth .12.111234.2.15222441232233322322232331222223654353732512456 VNG2476 ::A:::A:T::::A:P::::::::::::::::::ETTAGVEQVEAATR:TDTG:R::TGE HQ3436A :R:::::I:::T::T:EE:INTV::::::::::::::::::::::RASTA:V:SPST:TA hla1056 :RD:I:A:T::T::D:::T:::AGIDAEPSGPSRAARRGGTALG:GSAGS:LG::::LK: HVO_0099 ::A:::::TK::::::::VV:G:RGSNAGNATGGTANLGG::::STGR:R:A:::::DSR Hbo1397 :::::R:::::::::::QE::G:RGRSSGSRP::::::::::::SPRS:PSR:S:::::S NP0898A :::::::::K::::S:::E:::::::::::::::::::::::::-:::-:-:DADSR::T Hut1708 ::::::::ER::::AA::D:::A::::::::::::::::::::::LTDGRSNG:::R:GS rrnAC2901 :RA::::L:Q::::R:A:DQ::S:::::::::::::::::::::-:::-:-:-ALS:GTK Hmu2665 ::D:::::AP:E::A::::S::::::::::::::::::::::::::::-::G::GSTDD: consensus RGSDRSRSRSSSRSE----------------------------NHPLSDVWGDE #oth 543632523544446424223321233233333233222111152.21.1.233 VNG2476 TQP::AA::DDRD::::::::::::::::::::::::::::::GS:VA:::NT: HQ3436A QSD:H:KHAN:NNKTNSEDRRS:::::::::::::::::::::A::::::::EN hla1056 G::HAGD:TA:GEA:TADGTNDGGGTTRTRSEADAERRE::::::::::I:::G HVO_0099 :D:T:GSRSAG::AGGSGGTSSGGSDGRETGGSDGSADDSGRSS::::::::E- Hbo1397 S::S::S::Q::G:TSSRGRSGTGGENSRSRSQSDDADD::RS::::::::::G NP0898A :R:QTGQ:TGENGMD::::::::::::::::::::::::::::D:::::::::G Hut1708 G::R:::RS:::::Q::::::::::::::::::::::::::::SN:VA:::DT: rrnAC2901 :RH:::::::GDG--::::::::::::::::::::::::::::::::::::D-- Hmu2665 A::G::::::RR::S::::::::::::::::::::::::::::KS:MA:::DT: