|
Pairwise sequence scores | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
Consensus score | 2599 | VNG2154 | hla0226 | HQ3256A | Hbo1179 | HVO_0302 | NP5162A | Hut2539 | rrnAC2735 | Hmu2917 |
1959 | VNG2154 | 2626 | 1771 | 1733 | 1789 | 1774 | 1684 | 1733 | 1695 | 1757 |
2037 | hla0226 | 1771 | 2657 | 1879 | 1920 | 1952 | 1702 | 1722 | 1653 | 1726 |
2054 | HQ3256A | 1733 | 1879 | 2760 | 2110 | 1987 | 1637 | 1699 | 1645 | 1713 |
2110 | Hbo1179 | 1789 | 1920 | 2110 | 2770 | 2114 | 1737 | 1691 | 1698 | 1716 |
2176 | HVO_0302 | 1774 | 1952 | 1987 | 2114 | 2740 | 1805 | 1767 | 1803 | 1781 |
2004 | NP5162A | 1684 | 1702 | 1637 | 1737 | 1805 | 2636 | 1774 | 1817 | 1836 |
2020 | Hut2539 | 1733 | 1722 | 1699 | 1691 | 1767 | 1774 | 2627 | 1850 | 1892 |
1984 | rrnAC2735 | 1695 | 1653 | 1645 | 1698 | 1803 | 1817 | 1850 | 2646 | 1948 |
2033 | Hmu2917 | 1757 | 1726 | 1713 | 1716 | 1781 | 1836 | 1892 | 1948 | 2565 |
393 symbols consensus -MLLVLCVDLDDDLGRKTGIETPVVGRDAVEDAAVALATADPEDSDVNVLFQGVHLYDEL #oth 1...1..1.....1....244...1.134125...31.21......2..1.1.1241.52 VNG2154 :::::::::::::::::::VP::::::ND::H:::S::E::::::::::::E::::H:RY hla0226 ::::::::::::::::::::P:::I:A:D:TE::::::::::::::::::::::NVH::: HQ3256A M::::::::::::::::::LQ:::I::ETI:R:::D:::::::::::::::::I:Q::K: Hbo1179 :::::::I::::::::::RFD:::::::S::A::::::::::::::S::::::I:EH:S: HVO_0302 :::::::::::::::::::LS::::::QR::::::::::::::::::::::::IQVH::: NP5162A ::::I:::::::::::::DF:::::::::::E:::::::::::::::::C::::::::TI Hut2539 :::::::::::::I:::::::::::::::::S:::EF:::::::::L::::E:I:::::: rrnAC2735 :::::::I::::::::::::D:::I:::::V:::::::SN:::::::::::E:::I::DI Hmu2917 ::::I:::::::::::::DC:::::::::::S:::E:::::::::::::::E::::::SI consensus D-----DEAVEVAAVTGVDGSDVAANRAVGEEVDTVLASLSTGEDVRAVVVTDGAQDESV #oth 5543211.512..1...3322..3...21.4.1.2...2.22213131221........1 VNG2154 SD::::::D:V::::::::RG:::::::::R:::E::::::PTDP::::::::::::::: hla0226 AAG:::G::::::::::::::::K::::::Q:::R:::E:::::E:S:::I::::::::: HQ3256A SHDQAV::DIA:::::::::G::E:::VI:::::R:::G:::::NINTI:I::::::::I Hbo1179 VADAEV::Q::::::::TQ::::K::::I:::I:R:::G:::::N:S:I:I::::::::: HVO_0302 LESE::::E::::::::LE::::K::::I:D:I:::::::::::P:H:I:I::::::::: NP5162A ::::::::S::::V:::TAKA::S:::K:::::::::::::::::::::::::::::::: Hut2539 :RA:::G:S::::::::IE:::::::::::V:I:::::G:T::::::::I:::::::::: rrnAC2735 T:::::::P:::::::::::::::::::::::::::::::AAS:::::LL:::::::::: Hmu2917 ::::::::::::::::::::::::::::::::::::::::TAS:::::LL:::::::::: consensus LPVIRSRVPIDGVRRVVVRQAQDLESMYYTIKQVLADPETRGTILVPLGILLLIYPLAII #oth 1......23.1222........1...2...3...12.1.......1...1......2323 VNG2154 V:::::::::EALK::::::::::::::::L:::MN::::::::::::::::::::::VL hla0226 :::::::M::::M:::::::::::::L::::::::::::::::::::::V:::::::VVV HQ3256A :::::::::::S::::::::::::::I:::M::::::S::::::::::::::::::FVT: Hbo1179 :::::::::::S::::::::::::::I:::M:::::::::::::::::::::::::FLT: HVO_0302 ::::::::::::::::::::::N:::::::M:::::::::::::::::::::::::FVT: NP5162A ::::::::::::::::::::::::::::::F::::::::::::::I::::::::::V::V Hut2539 V:::::::D::::::::::::::::::::::::::N::::::::::::::::::::::V: rrnAC2735 V:::::::Q:::::::::::::N::::::::::::D:::::::::::::::::::::T:A Hmu2917 V::::::IH::::H:::::::::::::::::::::D:::::::::::::::::::::::L consensus ANFLGLPGA-VLGIISGLLGLYILFRGLGLEDTLDDAVDRVRDGLYAGRVTLITYVVAAA #oth 1351341.2222.25.121.1.4.2....21533.332424142.12...131...1.31 VNG2154 :DV::::::::::VS:AAV:::A::::::::RVA::::N:L:::::T::::::::::::: hla0226 ::LFDIA::A::::L::VV:::S::::::::E:I:G:AAS::NV::T:::::V:::::L: HQ3256A :SLFDV:::V::::::::::::T:S::::I::V:::I:A:T::I::E::::F::::A:I: Hbo1179 ::RFNV:::A:::LV:A:::::T::::::::TVV::::S:G::I::E:::::::::A:L: HVO_0302 :S:FDV:::V:::L::A:::::T::::::::SAV:E:A::A:NV:::::::I::::A::: NP5162A :DM:::::S:T::V::A::::::::::::::S:I:E:LEQ::V::F::::Q:V::::::: Hut2539 :::::M::D::F:LA:::::I:::S:::::G:AV:GV:::A:S::::::::IV:::::GV rrnAC2735 VEA::Y::S:A::VM:::::::::A::::A:KI::E::E:TTA::::::::I:::::::: Hmu2917 ::::E:::S:AI::::::::::V:A::::A:E:::RT:::::S::::::::V:::::::: consensus LLAVGGVRGVALLETVRA----GDPTAGLALAALVHGAVQWFAAAGITSSLGQVTDEYLA #oth .321.124.4443254466541454636534.3234.213.2.1..212.1.11..1..3 VNG2154 ::VI:::E:A:R:DA:::HAD::ALAPSTVV:::TY:::R::::::L:T::::::::::: hla0226 :IV::::Q:MDTI::::SVRG::GV:V:I::::F:::F:::L:V::V::::::I:::::: HQ3256A :II:::F::Y::::L::KAS::PEI:LV:GA::FI::S::::::::V::::::::::::S Hbo1179 :M::::F:::::::AIQ:TVA:T:::PP:I::::::::::::::::V::::::I:::::: HVO_0302 ::V:::::::E:::::SESVA::::P:::V::T::::::E:::::::::::::::::::H NP5162A :V:::I:G::ETAGELTT::::V::E:VS:T::F:Y:::E:V::::VIA:::R::::::S Hut2539 :::I::AS:LEM:D:::GGLESATLG:TQ:V::VLA::IH:L:::::::::::::::::: rrnAC2735 :::I:::S::QE::RQ--::::T::D:LEVI:S::S::I:::::::::::::R::::::D Hmu2917 :MVI:::S::RTV:SM--::::AVESVAE:I:G::F:S:R::::::::::F:R:::K::S consensus DRFRWRYLNAPFYVLAIAIVLYAVSGFFL-----------QSFSLTYLAVALTAGTLLGV #oth 12.2.........131.14.1131.311.311113223234644134..34.12...221 VNG2154 :::::::::::::::S::A:::TL::::::::::::::::EYVT::E::AV::::::VS: hla0226 G::::::::::::::S::V::::::::::P:::::AAPGVT:LG:PD::M::A::::TA: HQ3256A ::::::::::::::G::S::::V::::::P::::QGAAAG::::::Q:::G::::::::: Hbo1179 :::K::::::::::A:::::::V::::::NVNGVAGVPGV:P::::D:::G::V:::::: HVO_0302 :::K:::::::::::::::::::L:::::P::::EGVVGV:T:Y:PG::::::V:::::: NP5162A GG::::::::::::V:::V::HGL:A:::E:::::::::LDFAGIS:::AT::V:::V:L Hut2539 G::::::::::::I::::G:IH:::LYV::::::::::::GRV::S:::AM::::::::L rrnAC2735 GS:::::::::::::S::L::H:::A::::::::::::::GVQD:E:::IM::G:::::L Hmu2917 :S:E:::::::::::S::A:::G::SY:::::::::::::GTATIEE::::::::::::L consensus LSTLAFAVAESRFP----GADPERE-------- #oth 4...31.11.42441111322455442322111 VNG2154 :::::L::V::W--::::R:T::GS:::::::: hla0226 :::::::::::QL:::::S:::T--:::::::: HQ3256A F:::V:::::::::TTASSS::P:G:::::::: Hbo1179 :::::::I:::W::T::::VE:T:G:::::::: HVO_0302 ::::T:::::::Y:T::::S:G:N:QPA::::: NP5162A A:::::::::Q:Y:::::L::A:S:SELAG::: Hut2539 F::::::I::D:LE::::S:ESQASA::::::: rrnAC2735 V:::G:::::A::D::::R:EQHNQGPGGPSSE Hmu2917 G::::::I::T:WQ::::::::V--::::::::