|
Pairwise sequence scores | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
Consensus score | 3148 | VNG1232 | NP3078A | HQ3358A | hla2614 | rrnAC0127 | Hmu1220 | Hut1189 | HVO_1308 | Hbo0234 |
2448 | VNG1232 | 3219 | 2093 | 1940 | 2246 | 2241 | 2172 | 2210 | 2119 | 2092 |
2411 | NP3078A | 2093 | 3233 | 2058 | 2225 | 2232 | 2203 | 2175 | 2059 | 2141 |
2314 | HQ3358A | 1940 | 2058 | 3188 | 2051 | 2036 | 2111 | 2153 | 2255 | 2367 |
2540 | hla2614 | 2246 | 2225 | 2051 | 3331 | 2223 | 2273 | 2334 | 2227 | 2288 |
2593 | rrnAC0127 | 2241 | 2232 | 2036 | 2223 | 3168 | 2421 | 2364 | 2209 | 2271 |
2594 | Hmu1220 | 2172 | 2203 | 2111 | 2273 | 2421 | 3254 | 2354 | 2253 | 2330 |
2663 | Hut1189 | 2210 | 2175 | 2153 | 2334 | 2364 | 2354 | 3137 | 2250 | 2426 |
2497 | HVO_1308 | 2119 | 2059 | 2255 | 2227 | 2209 | 2253 | 2250 | 3188 | 2518 |
2583 | Hbo0234 | 2092 | 2141 | 2367 | 2288 | 2271 | 2330 | 2426 | 2518 | 3186 |
464 symbols consensus ---------MDAHISPSTVRGRARAPPSKSYTHRAILAAGYADG-ATVRDPLVSADTKAT #oth 2222122221224123.116.221...........2.....2231111421.3....3.. VNG1232 MPWAALLAG:H:TV:::R:::::::::::::::::L::::::::ETV::::::::::R:: NP3078A ::::::::::::::T::::N:TV::::::::::::::::::G::::::KN::F::::R:: HQ3358A :::::::::::VS::R:R::::V::::::::::::::::::G:S:::II:::I::::Q:: hla2614 :::::::::::VNVTS:::::TT::::::::::::L:::::S:::::::S:::::::::: rrnAC0127 :::::::::::IT:AE:::E:T:Q:::::::::::V::::::::::V:H::::::::::: Hmu1220 LVRPADRPDVN:E::::::G:T::::::::::::::::::::::::V:H::::::::R:: Hut1189 :::::::::::V:V:::::T:QVQ::::::::::::::::::E:::::::::E::::E:: HVO_1308 :::::::::::::VT::R:A::T::::::::::::V:::::S:E::V:::A::::::::: Hbo0234 :::::::::::VT::::RID::T::::::::::::::::::GGQ::::LN:::::::::: consensus MRAVEAFGGSV-----ELADDESALEVTGFDGRPATPDDVINCANSGTTMRLVTATAALA #oth 11.1212..4211111446515663313..211.32.41111.1.....1..11121..3 VNG1232 A::::LL::AA:::::--:RENGDWV::::GS:::I::A::D:::::::::::::A:::: NP3078A A:::::Y::TT::::::Q:::D--::::::::T:G::K::::::::::::::T:::G::V HQ3358A :::I:::::T::::::-EHV::NHI:I:::N:::R::T:I:::E:::::T:::A:CG::: hla2614 A:::T::::A:EPESG:RF::AD::V:D:::::::V:::::D:::::::::::::A:::: rrnAC0127 ::::::Y:::::::::S::E:::TV:::::::::E::::::D:::::::::::::::::Q Hmu1220 ::::T::::G::::::A:R:E:TV:D::::::::E::::::D:::::::T:::::::::G Hut1189 :G::::Y::::::::::RGV:--::::::::::::V:S:IV::E:::::::::::::::: HVO_1308 ::::::::::::::::--DC:GQTV::A::G:::G:::::V::E::::::::::GC:::G Hbo0234 ::::D::::DT:::::D:SA:::S:S:S::::::EV:A::V::E:::::::::::C:::G consensus DGLTVLTGDESLRSRPQGPLLDAIG-DLDGRAESTRRNGQAPLVVGGAVDGGEVAIPGDV #oth 1122.....2...1..1....1.2513.22211...4......1.31344..31211.11 VNG1232 ::T::::::::::A::H::::::LS:G:G:T:R:::G::::::::D:P:S::S::L:::: NP3078A :::A:::::::::::::::::::LD:Q:GA::::::E::::::::::DI::::L::R::: HQ3358A :::C::::::::::::H::::E::E:T::::G:::::::::::I::D:FQ::S::::::I hla2614 ::T::::::::::::::::::E:L::::GV::::::G::::::::S:PLA::::::::N: rrnAC0127 :D:A::::::::::::::::::::::Q:N:D:::::H::::::::::GI:::A:E::::: Hmu1220 ::::::::::::::::::::::::TT::::::::::G:::::::::::::::::S::::: Hut1189 ::I::::::D::::::::::::::::Q:::::::::A::::::::K:P::::T:S::::: HVO_1308 E::::::::A::::::H::::::VF:::::::::::::::::::::DGMT::T:E::::: Hbo0234 :::::::::D:::::::::::::VT:::G::G::::::::::::::D:M:::T:S::::: consensus SSQYITALLMAGAVTEEGIDIDLTTELKSAPYVDITLEVLDAFGVEAERT---------- #oth ...1111......1134.1124.1.2...1......211.22.11312721112122222 VNG1232 :::FV:::::::::::T::ET::::::::::::::::D:::::::G:SE::::::::::: NP3078A ::::::G:::::::::S::::E:::A::::::::::::::AD:::D::VIG:GDDSEVRS HQ3358A :::::::::::::::VD::::T:E::::::::::::V:L:S::D:TV::::::::::::: hla2614 ::::V:::::::::::::VE:::::P::::::::::::L::D::I::TPVGDGGDALDGA rrnAC0127 ::::::::::::::SPD::::::::::::S:::::::::::::::D::K::::::::::: Hmu1220 :::::::::::::::DG:::VH:E::::::::::::::::AD::I:::A::::::::::: Hut1189 :::::::::::::I:::::E:A:E::::::::::::I::::::::DV:S::::::::::: HVO_1308 :::F::::::::::::::::VE:::::::S::::::::L:AD:::::T:::::::::::: Hbo0234 :::::S:::::::::D:::::E:E::::::::::::::L::E::::::Q::::::::::: consensus --AAGFAVDGGQSYAPTGGEYAVPGDFSSISYLLAAGALAAADG--VVVEGARPSAQGDA #oth 1121.15.3...2.3.4114.6.......3...1.1..2.2432341412114......2 VNG1232 :::::YR:R:::A:::S:A::::::::::A::::::::::::::AA:::::MH::::::: NP3078A AG:D::R::::::::::D:T:H:::::::M:::::::::::DEE:::::A::H::::::: HQ3358A :::D::::P:::::T::D:T:V::::::::::::::::V::TADGA:II:::H::::::S hla2614 AG::::V:::::::::A::S:T:::::::::::V::::V::EP:EP:RI:::V::::::S rrnAC0127 ::D:::T:::::T:V:D::D:N:::::::M:::::::::::E::::LQ:TS:F::::::: Hmu1220 ::PD::::P::::::::D:::H::::::::::::::::::SE::::LTITS:Y::::::T Hut1189 ::::::D:A:::T:D:A::::::::::::::::::T:::::P::::LT:T:::::::::S HVO_1308 ::D:::S:P:::::::E::A:S:::::::L::::::::V:G:E:ED::I::::::::::S Hbo0234 :::D::S:A:::::D::::::E::::::::::::::::I:::E:ES:::::::::::::: consensus AIVDILERMGADIDWDRDAGEITVSRSELSGVEVDVADTPDLLPTIATLGAAADGDTRIT #oth ...21233..1324.1223.212.4314.1.21.2.211.......12...2...3.1.4 VNG1232 ::::V:::::::::::TES:V:::Q:::::::::G::::::::::::V:::::::T:::: NP3078A :::S:::S:::::E:N::D:R:::RQ:S::::::G::::::::::::V:::::::E:::: HQ3358A :::E:IQS::GQVA:::N:::L::PAAS:T:IT:::GNM::::::::::::I:::::V:N hla2614 :::E:V:::::::E:::E::V:::R:::::::::::G::::::::::A:::V:::::::M rrnAC0127 ::::::D:::::L:::EEH::::::Q:::T:I::G:E::::::::::::::::::V:::: Hmu1220 :::::VRE:::GV::::E::::E:TSAP::::::S::::::::::::::::::::T:::V Hut1189 :::::::::::::S:::::::::::::S::::::S:::::::::::SV:::V:::::::V HVO_1308 :::::VRD:::TV:::E::::LV::AAD:T:TT:::G::::::::::V:::I:::::V:E Hbo0234 :::::VRD::::VT:::::::L::::AT:T:TT:::G::::::::::::::V:::::V:E consensus DCEHVRYKETDRVSAMAEELTKMGASVTEEQDELTIHGGETDLSGATVDGRADHRIVMSL #oth 11....2......1...22.431.1312.5414.212.322214.24.2.13...11.1. VNG1232 :A:::::::::::A::::S:S:L::::E:RP:::VVR::D:E::::S::::G:::L::A: NP3078A ::::::L::::::A:::T::ERL:VETD:YE:::VVY::GI:--:G::A:HD:::::::: HQ3358A N::::::::::::::::T::GA:::::::KH:Q::::::::T:::TH:E:HG:::::::: hla2614 N:::::::::::::::::::E:L::KT:::P:T::V::S:S::R::S:::::::::::A: rrnAC0127 :A:::::::::::::::::::::::E:E:H::::FVY:ADS::V:T::E:::::::I::: Hmu1220 ::::::::::::::::::A::::::::E:R:ET:::::::S::Q::::::::::::I:A: Hut1189 :::::::::::::A:::::::A:::::::::EV:::::DD::::::V::::::::::::: HVO_1308 N:::::F:::::::::::::AE:::N:::QR:R::::::::::V::A::::G:::::::: Hbo0234 N::::::::::::::::D::G:::::::::::R::::::::::V::::E::H:::::::: consensus AVAGLVADGETTIAGAEHVDVSFPNFFDVLADLGAAVQR----- #oth 11.1.1.1.111162311......2..132531.2424643111 VNG1232 :::::::::::::::S::::::::D::E:::G:::DTDG::::: NP3078A ::::::::::V::KN:D:::::::S::ET:::::VG:ETGA::: HQ3358A :I:A:A:E:::::SDS:D::::::S::ES:SA:::S::VDR::: hla2614 :::A:::E:T:::R:G::::::::::::AM::::I::E:DGAGE rrnAC0127 ::::::::::::VT::::::::::D:::::DS:::::EQ::::: Hmu1220 SI:::::::T::VD:I::::::::D:::::G:I:::::H::::: Hut1189 :::::::::::IVQ:G:::::::::::::IESI::S:::E:::: HVO_1308 :::::::::::::::S:::::::::::EAMR::::EMTEH:::: Hbo0234 :I:::::E::::VT::::::::::::::AIES::VS:R:E::::