|
Pairwise sequence scores | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
Consensus score | 3723 | rrnAC0843 | Hmu1614 | VNG1073 | NP2738A | Hut1085 | HQ2402A | hla1769 | Hbo0179 | HVO_1375 |
2287 | rrnAC0843 | 3997 | 1882 | 1619 | 1680 | 1737 | 1536 | 1635 | 1823 | 1727 |
2208 | Hmu1614 | 1882 | 3890 | 1509 | 1607 | 1788 | 1507 | 1551 | 1621 | 1658 |
2170 | VNG1073 | 1619 | 1509 | 3727 | 1652 | 1465 | 1457 | 1535 | 1638 | 1656 |
2225 | NP2738A | 1680 | 1607 | 1652 | 3698 | 1633 | 1581 | 1658 | 1707 | 1675 |
2291 | Hut1085 | 1737 | 1788 | 1465 | 1633 | 3782 | 1562 | 1692 | 1780 | 1794 |
2205 | HQ2402A | 1536 | 1507 | 1457 | 1581 | 1562 | 3794 | 1757 | 2064 | 1947 |
2459 | hla1769 | 1635 | 1551 | 1535 | 1658 | 1692 | 1757 | 5312 | 2240 | 2254 |
2669 | Hbo0179 | 1823 | 1621 | 1638 | 1707 | 1780 | 2064 | 2240 | 4276 | 2701 |
2551 | HVO_1375 | 1727 | 1658 | 1656 | 1675 | 1794 | 1947 | 2254 | 2701 | 4915 |
763 symbols consensus --------------------------------MRD---W-------------LSHRADTT #oth 111111111112222222222222221223221132331111111111331213511622 rrnAC0843 :::::::::::MVRCRSPSRPVWESIRQRWGP:::PLN:P::::::::TQDLVT:::::: Hmu1614 :::::::::::::::::::::::::::::MVTLPEPEE:PVENPLPERSNDL:CE::SA: VNG1073 ::::::::::::::::::::::::::::::::::::::E:::::::::::::VTLQ:T:N NP2738A :::::::::::::::::::::::::::::::::::::::::::::::::::::AV:::A: Hut1085 ::::::::::::::::::::::::::::::::::TLDA:P::::::::QVDP:TA::SS: HQ2402A ::::::::::::::::::::::::::::::::::Q:::::::::::::::::::Q::E:S hla1769 ::::::::::::::::::::::::::::::::::::::::::::::::::::::::VVSS Hbo0179 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::R:S HVO_1375 MTGAPDDAAGGNDSESTEDDATAADARGFAGP::::::::::::::::::::::::VAA: consensus PDATALIDAATGDAWTYAELDAAVDALAGRLAALGVEPGDRLGVVLETRPAFVTLVHAAA #oth .223.2252341453214311641244124132323443222133241233424342.24 rrnAC0843 ::R::MVA::S:N:V::RK:::::::V:AE:DRRVDA:DATVATL:P::::VG::LF::M Hmu1614 ::::::::TDG::T:::::F:SR:E:WR:G::T:VD::AP:I:L::P:G:::A:ALF:I: VNG1073 ::RP::V::::DRT:::DA::S::::T::S::::::T::::VA:L:::::::A:::F::: NP2738A :G::::AV:D-:PDRS:D:::ER:EV::::::::::GV::TVA:C::::HE::VV:::LQ Hut1085 ::R::V:ESE::ER:::E::FDEA:W::::I::ACEGRP::::IAM::GID::RAT:::W HQ2402A :T:C:::::E:::NY:F:A::Q::ER:::::IT:::SQ:::::I::SP:VES:LIFY::: hla1769 ::D::::R:ED:E::::TD::RL:SET:D::V:H:I:AD:::::LTPPYVGT:G:::::M Hbo0179 ::::::VR:V::E::DFT:::GM::EM::::V::::A:::HV::::QP:VEY:::I:::M HVO_1375 ::RQ:::H:::::S::FR::::L::ET::Q:::::::A::H:::::TPGIDY:R:I:::T consensus RLGATLVPLNDRLTARELATQAETADVDAVVCGASTESAA-------ADIDDAPVVSVDD #oth .213231..451244522643335143433213451253322131144366242442234 rrnAC0843 ::::::A:::VE:D:AT:QS:LS:V:A:LL:::D::A:L::::::::::::GC:T::::R Hmu1614 :RNGVA::::V:EATETV:R::T::G::::L:SPA:::T::::R::AVAPPE:T:C:IGE VNG1073 ::::V:::::A::SQP::::::DAVAPV::I::RD:AT:::::::::-:RL:::A:R:A: NP2738A ::::V::::HTEQ:PP::R:RLSAVPPE:A::::A::A:L:::::::T:AAETT::T::E Hut1085 :::TAI:::DT:EPTEQ:DFL::K:A:::I:ATDR:AE:I::::::::::EGC::F:::E HQ2402A :I:::A:::GH::::T:IE:RLTH:T:QT:I::R:ADKTVFEAA::T:IEN:ISII:M:K hla1769 :I:::F:::GQE::E:::TERV:R::L:::::AEP::G::LGAVEECEGG:EI::L:::: Hbo0179 :::V:::::G:::::::::E:I:::::TVL::::E::AR:::::::VEAT::V:LL::ES HVO_1375 ::::V::::S:::::D:IGRNV:L:::TTL:::E::::T:::::::VEATT:V::::::: consensus PTADAVRALESTDPGP-------VTPAEWALDDTQLLLFTSGTTGEPKAVRLTAGNLLAS #oth 45565154245452451111111352364465344222......13.12.3..52.2521 rrnAC0843 ELSA:AV:D:TAAA:SADETATD::::PLSRT::::VI::::::S:::G::::V:::V:: Hmu1614 :S:GD::R::P:E:AG:::::::-S:::ADAGTDR:V::::::::T::G::::R:::I:: VNG1073 DAT--::P:SG:::DA::::::::::VDS:W:::R::::::::::D:T:::::YR::A:: NP2738A ::::-A:P:SGVT:E::::::::FDLP:::::EPLAV:::::::::::G:V::L::V::: Hut1085 TDVSG:A::PAH:G:T:::::::-::RARYPS::H:IM:::::::::TG:K::LT::F:: HQ2402A S:I:S:DSV:N:I:AG::::::::NT:T:NSQR::::::::::::S::::K:::::I:W: hla1769 :A:E::T:VH:V::::::::::::E:P:::TT:YLCI::::::::D::P:P:::::VYS: Hbo0179 T:TTE:VS:T:VL:D::::::::IP::S:S:A:V::::::::::::::::K::M:::::: HVO_1375 :RWEG:IN:S:IA:KR::::::::E:VG:S:SE:M::::::::::T:::::::M:::::N consensus AVASAFRLGVDPDDRWLVTLPLHHMGGLAPVLRSALYGTTVVLQR--EFDAAATADDLRT #oth .31123.1.343412.1131122.1..22133.33...1231124113.21332343157 rrnAC0843 ::::SY::::L:::::::C::TY:::::::FI:::::::AA:V::::S:::D::QQV:AE Hmu1614 ::G::H::::SAS:::::C::MY:::::::LV::T:::::T::::::S::P:E::RV:GA VNG1073 :A:::A::::L::::::CP:SMY:T::VSV:::T::::::A::T:TPG:::::VG:A:E: NP2738A :T::::::::QRG:C:H:P::MY::::::::Y::V::::ALSV:S::T:::E:::ER::N Hut1085 :I:::::::LTRR:::::SV:MV:::::::LV::T::::S:::::::::EP:E::AVI:D HQ2402A :::::::V:IT::EQ::::::::::::I::I::GP:::M::::RG::::::EQAVA::HQ hla1769 :::::::::::HE:::::S:S::::::::::Y::::::::L:::E::G:SPGG::::ID: Hbo0179 :T::M::::F::::::::::S::::::I:::::MP:::M::::RD::::::G:A:::IDR HVO_1375 :::G:::V::SR::::::::S::::::IG:I::GP::::::::RE::G:::GGA:::IGK consensus YDVTGVSLVPTMLRRLLDS--RGTLPDSLRFVLLGGAPAPRELIERCRDASVPVYPTYGM #oth 433.11.1..1..511234113353234..21.1..112254.111243331.13....3 rrnAC0843 HG:::::::::::S::::A::GWEP:A:::::::::G::SET::::::ERD::::::::: Hmu1614 ASI::::::::::T::::E::GWRPA:G:::::::::::RPA::::::::E::::::::T VNG1073 H:C:::::::P::D::VEA::-DAV::::::A:V::::T:P::V::ACA:G:::C::::A NP2738A VEA:A::::::::E::IAV::-:D:::-:::A:V::::C:AS:V::AH:RG:::A::::: Hut1085 F::::I:F:::::S:::EE:::WSP::L:::::::::A:::D::::SEA:G::A:::::: HQ2402A ::I:A::::::::::M:N:ANKSSF:ET::T:::::::T:TA::NQ:Q:E:I::C::::L hla1769 :::::I:::::::QQM::R::::::S:T::VA::::::::D::::::::Y:I:::::::: Hbo0179 ::::A::::::::::M:::::::::AS:::T::::::::::::V:::::Y:I:::::::: HVO_1375 :::::::::::::T:M:::::::::S::::V:::::::::D:::::::NY::::H::::: consensus TETASQIATATPSEAFDHPGTVGRPLLFTDVTVVDEDG-DPCEPGETGEIVVDGPTVTPG #oth ..21..21.131541344331..3.1522322123331144342.34.22111..111.. rrnAC0843 ::::::::::R:ET::E:A::::Q::V:::::::A-:::AA:D:::R::::::::::::: Hmu1614 :::::::T:::::::::Q:E::::::DG:T:::LN-::::A:R:::V::L::S::::::: VNG1073 ::::::A::LHA:D:PA::ES::::::G:T::::EP:THT:VPD:QA:LLA:S::::::: NP2738A ::A:::::::A::M:RA::HS::Y::M:AE::::NDE::VG::::TV:D::::::M:::: Hut1085 ::::::V:::::TQ::EN:::::Q::M::K:AII:-::::S:A::::::::I:::::::: HQ2402A ::::::V:::R:QT::NN:D:::T:::WS:I:I:::S::S:QPA:SP::::::::::::: hla1769 ::S::::T::::RQTKGRL::::::IFG::::::::N::T:V::::::::::::::I::: Hbo0179 :::S::V:::R:D:::::V:::::::FW::::::N:::::RLP::::::F::S::::S:: HVO_1375 ::::::V:::::R::::DV:::::::Y:::LR:::::::T:V:::TP::L::S::::S:: consensus YLDGEETA--------------------------AFDERGLRTGDIGYRDDDGRLYVVGR #oth .33345241111111111111111111111112462433.12.1.3.34.34.414.31. rrnAC0843 ::N:DDD:::::::::::::::::::::::::::-:SDH:F::S::::::A::H:W:E:: Hmu1614 :::ESQ:::::::::::::::::::::::::::D::::::F::::L::::::::CF:::: VNG1073 :-A::G::::::::::::::::::::::::::::PRC:H::L:::R:WI:A::F:H:G:: NP2738A :::D:T:::::::::::::::::::::::::::AR:TA:::::::R:::::::::H:::: Hut1085 :::D:A:R:::::::::::::::::::::::::RV::::::H:::L::::EH:::::::: HQ2402A :-A:P::M::::::::::::::::::::::::::TTGAY:FH:::::IL:TN:::T::N: hla1769 :I::AGAQRGSDNTRTGGGKNGADGSNTAALDRSS:GSH::H:::V:CF::E:Y:::LN: Hbo0179 :YNNP:AT::::::::::::::::::::::::AA:::::::H:::V::V:EG:::::LN: HVO_1375 :YRNP:AT::::::::::::::::::::::::AD::SDA::::::::::::::L:::LN: consensus VDDRIVTGGENVDPGEVAAVLREHPAVEDAAVVGIPDDEWGERVAALVV----------- #oth 51.4.1......2144144211421323332.1.22.33..21.3.11211111111111 rrnAC0843 :::Q:::::::::AST::DTI:::::::::::::L::E:::Q:::::::::::::::::: Hmu1614 :::M::::::::R:AR::RTIERL::::T:::::V::E:::Q::::A::::::::::::: VNG1073 AS:E:I::::::R:EA::::::::::I:AV::::V:::A::D::G::::::::::::::: NP2738A S::T::::::::::T::E:A::A:S::DAC::::LA:::::Q:::::::::::::::::: Hut1085 I::::::::::::::GIQS:IES::G:AESV::::::E::::::G::::::::::::::: HQ2402A L::::::::::::::::TT::ES::::AA::::::::SD:::::V:A:T::::::::::: hla1769 L::::I::::::E::::ID::::F:SA:::::::LD::V:::::S::LAVGDRLRDTEVT Hbo0179 ::::::::::::::::::D:::S::D:H:V:::::::A::::C:S::::::::::::::: HVO_1375 K::::I::::::::::::::::D::D:D::T:L:V::A:::::::::::::::::::::: consensus ---------------PDDDEL-----------------------------------DDDA #oth 111111111111111245327311111111111111111111111111111111122655 rrnAC0843 :::::::::::::::---GDV:::::::::::::::::::::::::::::::::::SPT: Hmu1614 ::::::::::::::::VT::::::::::::::::::::::::::::::::::::::TAP: VNG1073 ::::::::::::::::A::TAD:::::::::::::::::::::::::::::::::VSVAS NP2738A :::::::::::::::S:G:DT:::::::::::::::::::::::::::::::::::TP:: Hut1085 ::::::::::::::::QN:TEP:::::::::::::::::::::::::::::::::::S:E HQ2402A ::::::::::::::::VMT:RA:::::::::::::::::::::::::::::::::VSN:D hla1769 AEGPTGVDGLDESDE::GGDDDDREPTDPDGGDESRPDENGSDKEGPDESDAAPLV::EQ Hbo0179 :::::::::::::::S:T:::::::::::::::::::::::::::::::::::::::RSG HVO_1375 ::::::::::::::::A:P:NP:::::::::::::::::::::::::::::::::P::ED consensus LRSFCRERLAGFKIPKTVAIVDALPRTVSGTVDREAVRERLRDRAAD------------- #oth 24332224..3124.1413621211..3...12.31234525547555443322212222 rrnAC0843 V:DH:A::::PYEV::::R:A::::::A::::::A:::SHFGTASESNESA::::::::: Hmu1614 VIEAVADD::D:AV::::TL:::::::Q::::::QQL:DL:GRSEN:::::::::::::: VNG1073 ::A::DG::::Y:H:RV::A:::::::A::::::Q:AVAE:::D::P::::::::::::: NP2738A ::EH:::::::Y:L:R:IGV:::::::A::::::D:A:D::SECQ--::::::::::::: Hut1085 IE:L:::E::S::V::SI::GE:I:::::::::::::I::I:H:---::::::::::::: HQ2402A :::HA:DY::::::::QIRV::T::::I:::IN:D::H:LFMTD::VTPEDE:::::::: hla1769 :V::V:D::::::::::::Y::E:::::::::::::::RI::::GY:PRRDADLETAGFE Hbo0179 ::D:A::Q:::::::RVI:FA:E:::::::::E::::::Q:IE:REAVA::::::::::: HVO_1375 :DA::::::::::C:RL::TA:E:S::::::::::::::::VAAKPVAEAEPEHATDYDD consensus ------------------------------------------------------------ #oth 222222221221332333232323233322322233232221332313332222222232 rrnAC0843 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: Hmu1614 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: VNG1073 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP2738A :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: Hut1085 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: HQ2402A :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: hla1769 PAEPTEPAGPDDPDDPATAPATSNDREETGDGERVDDGGTDDDDETDDQSVGDDSRDGEG Hbo0179 ::::::::GDTDESDEREAGDVGDAGSVSGEDDAGEKEAEDDEKVNDEKVDETDAEGDLG HVO_1375 TNDDAGDDGDDDDESDDSETDSGEATPASDADEAAIDDAEGDATVADAERDGDEAEDDSE consensus ------------------------------------------- #oth 3332222232233323322222122222211111111111111 rrnAC0843 ::::::::::::::::::::::::::::::::::::::::::: Hmu1614 ::::::::::::::::::::::::::::::::::::::::::: VNG1073 ::::::::::::::::::::::::::::::::::::::::::: NP2738A ::::::::::::::::::::::::::::::::::::::::::: Hut1085 ::::::::::::::::::::::::::::::::::::::::::: HQ2402A ::::::::::::::::::::::::::::::::::::::::::: hla1769 SGDDGSGDDGGDGDEDAAERSEAIDDRVGG::::::::::::: Hbo0179 TNTEA::RADGTQSSSNTDN::::::::::::::::::::::: HVO_1375 ASVDGAERGDAERAEGDTDNGDADAGDTDGGDGGDEFVPDRDE