| ||||||||||||||||||||||||||||||||||||||||
| Pairwise sequence scores | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Consensus score | 7468 | VNG2636 | hla0680 | HQ3072A | HVO_0393 | Hbo1110 | NP0504A | Hut1003 | Hmu0338 | rrnAC2116 |
| 6276 | VNG2636 | 7408 | 5723 | 5699 | 5655 | 5915 | 6061 | 5996 | 5947 | 5889 |
| 6465 | hla0680 | 5723 | 7416 | 5974 | 6233 | 6247 | 5829 | 5981 | 6160 | 6055 |
| 6234 | HQ3072A | 5699 | 5974 | 7645 | 5947 | 6343 | 5842 | 5655 | 5755 | 5710 |
| 6337 | HVO_0393 | 5655 | 6233 | 5947 | 7436 | 6318 | 5786 | 5665 | 5805 | 5789 |
| 6550 | Hbo1110 | 5915 | 6247 | 6343 | 6318 | 7397 | 6113 | 5890 | 5995 | 5880 |
| 6513 | NP0504A | 6061 | 5829 | 5842 | 5786 | 6113 | 7426 | 6030 | 6153 | 6157 |
| 6520 | Hut1003 | 5996 | 5981 | 5655 | 5665 | 5890 | 6030 | 7472 | 6400 | 6597 |
| 6660 | Hmu0338 | 5947 | 6160 | 5755 | 5805 | 5995 | 6153 | 6400 | 7610 | 6624 |
| 6638 | rrnAC2116 | 5889 | 6055 | 5710 | 5789 | 5880 | 6157 | 6597 | 6624 | 7477 |
1048 symbols consensus MSKDYIEVRGAEEHNLKDLDVEIPREEFTVVTGLSGSGKSSLAFETVYAEGQRRYIESLS #oth .141311....11...212.141...311...............1.1............. VNG2636 ::EE::::::::::::T:::::L:::SLN:::::::::::::::::I::::::::::::: hla0680 :::::::::::::::::::::R::::::::::::::::::::::D::::::::::::::: HQ3072A ::T:F:::::::::::D::::Q::::S::::::::::::::::::::::::::::::::: HVO_0393 :::::::::::::::::N:::R::::T:::::::::::::::::D::::::::::::::: Hbo1110 ::::F::::::::::::::::Q::::A:::::::::::::::::::I::::::::::::: NP0504A :TD:IV-::::S::::::I::S:::::::::::::::::::::::::::::::::::::: Hut1003 ::::V:::::::Q:::::V:CT:::::L::::::::::::::::::I::::::::::::: Hmu0338 :TRE::::::::::::::I::::::::L:::::::::::::::::::::::::::::::: rrnAC2116 ::::I:::::::::::::V::::::::L:::::::::::::::::::::::::::::::: consensus AYARNFLGQMDKPQVESVEGLSPAISIDQKNAANNPRSTVGTVTELHDYLRLLYARVGTP #oth .............1..3..............1........................1.11 VNG2636 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: hla0680 ::::::::::::::::::::::::::::::::::::::::::::::::::::::::I::Q HQ3072A ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::VQ HVO_0393 :::::::::::::K::A::::::::::::::G:::::::::::::::::::::::::::Q Hbo1110 ::::::::::::::::A::::::::::::::::::::::::::::::::::::::::::Q NP0504A ::::::::::::::::N::::::::::::::::::::::::::::::::::::::::::: Hut1003 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: Hmu0338 ::::::::::::::::T:::::::::::::::::::::::::::::::::::::::I::: rrnAC2116 ::::::::::::::::N::::::::::::::::::::::::::::::::::::::::::: consensus HCPECGREVGEQSAQNMVRRILELPEGTRAKIAAPVVRDQKGAFEDLFDELVSEGYARVE #oth 11.31.21......13..51223..3..11.23..12..1..2.212.21..31..2.11 VNG2636 :::::::::::::::Q:::::FD::A::K::LL:::::::::::::::ED::N:::S::A hla0680 YD:VT:E::::::::D::NQ::::::::::::::::I:::::::::::E::::D:::::: HQ3072A YD:LT:EV:::::::E::EQLMS::V:::::V:::IA::E::T:A:R:::::AD:::::: HVO_0393 YD:IT:A::::::::D::DQ:::::::::::VV:::::::::E:K:::SD:::::::::: Hbo1110 YD:LT:E::::::::D::TQ::S::D::::::V:::::::::::::::::::AD:::::: NP0504A :::::::::::::::Q::::L::::D:::::LC:::::::::::::T:S:::::::T:I: Hut1003 ::::::::::::::E:::S:::::::::KL:::::I::::::::::R::D::G:::S::: Hmu0338 ::::::::::::::::::::M:A::::::::::::::::::::::E::E::::::::::: rrnAC2116 ::::::::::::::::::S:L::::::::::LC::::::::::::::::D::G:::S::: consensus VDGEEYDLTLDRPDLDENYDHTIDVVVDRVKVSPDARSRITDSVETALEEADGVLKVIVP #oth ...143..2622.2..2.....1..1...122422111..1.......3112.31.112. VNG2636 ::::S:::AY:D::::::::::V:::::::T:TE::::::::::::::D::::::::V:: hla0680 ::::PI:::::D:E::Q::::::::I::::T::::::::::::::::::::::A::L::: HQ3072A :::KT::::RET:S::K::::::::I:::I:ID:E:TA::::::::::D::G::::::I: HVO_0393 :::::F::SFET::::K:::::::::::::::A:E:::::A::::::::::G::::L::: Hbo1110 ::::AF:::VN:::::K::::::::::::::IR:ED::::A:::::::T:::::::LV:: NP0504A ::::::::SMET:::::::::::::::::::LRASD::::::::::::Q:::::::::L: Hut1003 :::::H:::::::::::::::::::I::::T:A:::::::::::::::TA:::I:::::: Hmu0338 ::::P::::I:D:::::::::::::I::::S::A::::::::::::::::GA:IT:::L: rrnAC2116 :::::F:::::::E:::::::::::::::::I:::::::::::::::::::::T::::L: consensus DPPADVP--L-GSNARSTGDLA-DGDGD-----DRLVVEFSEELACTHCGIDISEIETRS #oth .12223411211231.1..2.132234.232223.12111.12.111112222311.... VNG2636 :AGP:TE:::G:AT::::::::D:AAD::::::-:::::::DA::::::::::::::::: hla0680 :::::::::F:A:::::::S::E:A:::::::::::::::::::GNPNSDVQF:A::::: HQ3072A :::::::::F:A:::::::A:G:-::S::::::N::I:::::::GNPNSD:QFV:::::: HVO_0393 :::::L:::F:A::T::::S:::-:E::::::::::::::::::GNPNSSFRF::::::: Hbo1110 :::E:::::F::::T::::::::-:E::::::::::::Q:::::GNPNSDFQFT:::::: NP0504A ::::EAD::I::TE:::::::::-::D::::::E::TA::::::::::::::LP:::::: Hut1003 :::E:AE:::G:AT::::::::E:ESH:TAA:::::::::::D::::::::::::T:::: Hmu0338 :::EG:S:::G:AT::::::::GT::S:DHSDRE:::::::::::::::::::::::::: rrnAC2116 ::AEGAAET:G::D::A::::::::EE:DGATS::I:::L::D::::::::::::::::: consensus FSFNSPHGACPECEGLGETKEVDEDLVVTDPSKPLKHVFEPWSYDRTYYRRQLDNVAAHF #oth ......1....2...1.41...112..14.31..211...1...3.1..1111.2..3.. VNG2636 :::::::::::::::I:N::::S:::::V:T:::I:D:::A:::Q:S:::TR::A::::: hla0680 ::::::Y::::::::I:S::::::G::ID:S::::::::::::::::::S:::::::D:: HQ3072A ::::::Y::::::::::Q::::::::::R::::::TD:::A:::::S:::TRI:A::S:: HVO_0393 :::::::::::::::::KA::::P::::::::::::::::::::N::::::::::::D:: Hbo1110 :::::::::::A:::::Q::::::::::V:S:::V:::::::::N:S:::TRI:S::::: NP0504A :::::::::::D:::I:::::::::::::::T::I:D:::::::S:S:::TR::S::::: Hut1003 :::::::::::A::::::::::S::::I::::::::::::::::N::::S:::::::E:: Hmu0338 ::::::::::::::::::::::S:E::IQ:R::::::::::::::::::S:::::::D:: rrnAC2116 ::::::::::::::::::::::S::::::::T:::::::::::::::::S:::::::E:: consensus GVSVDTPFEELDEDVQRQFLYGTDDEVVFEWQTKNGTRRKTERFEGVIPNLERRHVETDS #oth 1.113.1.21.2242.31..1..135.1.213.1....2.121....21.....1..... VNG2636 ::::::::D:::DA::QA:::::S::::::RS::::::::EK::::::::::::Y::::: hla0680 :::LS::::::::TI::::::::::L:H:::T::::::E::::::::::::::::::::: HQ3072A D:::K:S:AD::S:T:::::::::T:::::R::R:::::::K:::::::::::::::::: HVO_0393 :::::::::::SDE::DA::F::SED:::::T::::::H:EHP::::VG::::::::::: Hbo1110 D:::::::::::::::::::::::EQ:::KR::R::::::EK:::::::::::::::::: NP0504A ::D:E::::D::::::::::::::E:::::R:::::::::EK:::::M::::::Y::::: Hut1003 :::LE::::::P:SI::::::::::V:H:Q::::::::E::::::::::::::::::::: Hmu0338 :::LE::::::::SI:H::::::::L:H::::::::::E::::::::V:::::::::::: rrnAC2116 ::DLS::::::::S::::::::::SR:H:::R::::::E::::::::::::::::::::: consensus DRTREHIEEYMAVTTCPACDGTRLKAQSRHVLVDG-----------------TSITEVNR #oth 111.1...21.11....4.2.1...32..1.1.2211111111111111111.3111..2 VNG2636 ES::D:::T::S:::::::::::::PS::A:::::::::::::::::::::::P::D::: hla0680 E:A:D::::::::::::E:E:::::E:::::::AD::::::::::::::::::A:::::E HQ3072A :S:::::::::::::::::::::::K:::::::GE::::::::::::::::::A:::::Q HVO_0393 ::::D::::F:::::::D:N:S:::E:::::R:G:::::::::::::::::::TLP:::: Hbo1110 :S::::::D::::::::D:::::::E:::::::AD::::::::::::::::::::::::: NP0504A :S::::::T:::T::::S:::::::PE::A:::AD::::::::::::::::::A:::::: Hut1003 ::A::::::F::T::::N:E::::::E::A::::::::::::::::::::::::::D::E Hmu0338 ::A::::::F:::::::E:E::::::E::::::::SSASDASGTSSEVSSDG:::::::: rrnAC2116 ::A::::::F::T::::::E::::::E::A:::::::::::::::::::::::::::::E consensus MSIGDALEHFEGLEAELSERDRTIAEEILKEIRARLGFMEEVGLEYLTLDREASTLSGGE #oth 11.22.12...11145131.232..4..1....1..1..2....1.1......1...... VNG2636 :::::::A::::M::::DA::TK::A:::::::::::::T:::::::::::::::::::: hla0680 :::AE:R:::::M:GA:N::ET:::T::F::::S::::::::::::I::::::::::::: HQ3072A :::::::T::::::S:::::EE:::S:::::::S::R::Q:::::::::::::::::::: HVO_0393 :T:AG::::::::::D::::H::::Q:::::::::::::T:::::::::::::A:::::: Hbo1110 :::::::::::::::::D::E::::::::::::::::::::::::::::::::::::::: NP0504A :::::::::::T:D:D:G::E::::::::::::::::::::::::::::::::::::::: Hut1003 L:::::::::::M:DGM::::AM::T:::::::::::::Q:::::::::::::::::::: Hmu0338 :::::::::::::::S:D:::TK::::::::::::::::::::::::::::::::::::: rrnAC2116 :::S:::A::::M:EN::A:::K::::::::::::::::T::::D::::::::::::::: consensus SQRIRLATQVGSGLVGVLYVLDEPSIGLHQRDNDRLLNTLEGLRDLGNTLLVVEHDEETM #oth .........1........................1..1..11........2.....1... VNG2636 :::::::::I:::::::::::::::::::::::::::::::E::::::::I::::::::: hla0680 ::::::::::::::::::::::::::::::::::::::::A:::::::::V::::::::: HQ3072A :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: HVO_0393 ::::::::::::::::::::::::::::::::::K:::::::::::::::I::::::::: Hbo1110 ::::::::::::::::::::::::::::::::::::::::::::::::::I::::::::: NP0504A ::::::::::::::::::::::::::::::::::K::D::::::::::::V::::::::: Hut1003 :::::::::I:::::::::::::::::::::::::::::::E::::::::::::::T::: Hmu0338 :::::::::I::::::::::::::::::::::::::::::AE:::::::::::::::::: rrnAC2116 :::::::::I:::::::::::::::::::::::::::::::E::::::::::::::T::: consensus RRADNIIDMGPGPGKRGGEVVVNGDFDDVCAAEDSITGDYLSGRRDIPVPDERRESDGEL #oth 1...411.......32..11.1212222142321.1.11..1.224.1..12..34135. VNG2636 ::::TV::::::::RH:::::A::SVA::M::T::::::::A::EQ::::::::DY:DT: hla0680 ::::E::::::::::::::::AQ:::::IV::D::::A::::::K:::::E:::DP:::: HQ3072A ::::S:::::::::SQ::::::H:::ET::E::::::::::::Q:Q::::ED:::::TA: HVO_0393 ::::E::::::::::::::::AQ:::::IV::D::::A::::::K::D::ES:::G:::: Hbo1110 :::::VV:::::::::::::::Q:::::I:::D:::::::::::KE::::::::S:ENF: NP0504A W:::::::::::::::::D::A:::VE::M:T:E:V:::::A:::E:::::::::A::Y: Hut1003 ::::::V:::::::N::::I::::PVE::LDS:E:::::::A:E:S::::::::DP::T: Hmu0338 :::::::::::::::::::::::::M:E:IDC:::V::E::::E:T:::::D::A::TH: rrnAC2116 ::::Q::::::::::::::::::ASM:E:IDT:E:V::E::::E:T:::::S:::A:::: consensus TVRGARQHNLADLDVDLPIGTFTAITGVSGSGKSTLMHDILYKGLARRMNDNTSVNPGEH #oth 113..1....322..42.2131.11...........2.11....11.2...1.1.2..1. VNG2636 ::T:::::::RN::::::::A::::::::::::::::::::::::::E:::::::D::D: hla0680 ::::::::::KN:::S::L::L:TV:::::::::::I::V::::IV:E:::::::D:::: HQ3072A :I:::C::::KNI::Q::::Q::::::::::::::::::::::::::E:::::::D:::: HVO_0393 V:::::::::D::::PI:LE::::V:::::::::::::E::::::::::::::::D:::: Hbo1110 ::::::::::K::::E::::Q:::::::::::::::::E::::::::T:::::::H::D: NP0504A ::::::::::RGV:::F:M:C:::::::::::::::L:E::::::V:::::-:D:::::: Hut1003 :IQ:::::::::::::I:L::::::::::::::::::::V:::::::E:::::::::::: Hmu0338 :IE:::::::::::::::::C::::::::::::::::::V:::::V:::::-:D:::::: rrnAC2116 :::::::::::::::SI:L::::::::::::::::::::V:::::V:::::-:D:::::: consensus DAIEGIDDIETVRLIDQSPIGRTPRSNPATYTGVFDYIRELFAETKLSKQRGYEKGRFSF #oth .2.1.4141.......................21..11..1..1.2.111...21..... VNG2636 :::::TEHV::::::::::::::::::::::::I::::::K::Q:::AT::::K:::::: hla0680 :::D:M:Q::::::::::::::::::::::::D::::V:::::::::::R:::::::::: HQ3072A :::::T:E:::::::::::::::::::::::::::::V:::::::::::::::A:::::: HVO_0393 :::::Y:::::::::::::::::::::::::::::::V:::::::::::::::::::::: Hbo1110 ::::::EH:::::::::::::::::::::::::::::::::::::::::::::::::::: NP0504A :D:::::::::::::::::::::::::::::::::::::::::::::A:::::A:::::: Hut1003 ::::::EG::::::::::::::::::::::::D:::H::::::::::AT::::K:::::: Hmu0338 :G:::::E::::::::::::::::::::::::N:::H::::::::N:::::::::::::: rrnAC2116 :::D:L::::::::::::::::::::::::::N:::H::::::::S::::::::V::::: consensus NVKGGRCEACGGQGTVKIDMNFLSDVYVPCEECGGARYNDETLDVTYKDATIADVLDMEV #oth ........3.1...111.1.....1.3....1.2.1...12..1..1.22..1...1.2. VNG2636 :::::::::::::::Q::::::::::H::::::::D::::::::::F:GK::::::::S: hla0680 ::::::::E:::::::::E::::::::::::::::::::::::E::::::::S:::::S: HQ3072A ::::::::T::::::::::::::::::::::T::::::::K:::::::ER::::::E::: HVO_0393 ::::::::::K:::N:::E::::::::::::::N:::::A:::::::::K:::::::::: Hbo1110 ::::::::::::::::::E::::::::::::::D::::::A::::::::K::S::::::: NP0504A :::::::::::::::::::::::::::::::::D::::::::::::::G:::S::::::: Hut1003 ::::::::::::::::T:::::::N:E::::::::D:::A::::::::GK::::::E:T: Hmu0338 ::::::::::::::N:::E::::::::::::::D::::::::::::::::::S:::::S: rrnAC2116 ::::::::G:::::::T:::::::::T:::::::::::::::::::::G:::::::::T: consensus DEAHDFFESHSGIRRRLQLLEDVGLGYMRLGQPSTTLSGGEAQRVKLAEELGKKDSGDTL #oth 3..21..1223212...2..4....1..4...............1........232.2.. VNG2636 E:::::::AD:RLG:::::::::::D:::::::::::::::::::::::::::QS::::: hla0680 :::Y::::::Q:LQ:::K::K:::::::E:::::::::::::::::::::::::AT:::: HQ3072A S::LE::SAN:Q::::::::::::::::T::::::::::::::::::::::::RQT:::: HVO_0393 :::L::::AN:Q::::::::H:::::::Q:::::::::::::::::::::::::QT:::: Hbo1110 S::LE::::N:Q::::::::::::::::T:::::::::::::::::::::::::QA:::: NP0504A ::::E:::G::::::::K::Q:::::::::::::::::::::::I::::::::Q:T:N:: Hut1003 A:::E:::::P::::::E::R:::::::K::::::::::::::::::::::::::::E:: Hmu0338 A::Y::::G:T::::::K::K::::D::::::::::::::::::I::::::::::::E:: rrnAC2116 E::Y:::::::::::::E::K::::::::::::::::::::::::::::::::::::E:: consensus YLLDEPTTGLHKEDERKLIDVLHRLTDNGNTVVVIEHELDLVKNADHIVDLGPEGGENGG #oth ...........22......2..1..1.4....2.1......1....411.......23.. VNG2636 :::::::::::SH::::::E::Q::::R:::::::::::::::::::V::::::::AA:: hla0680 :::::::::::::::::::::::::V:A::::::::::::::::::RVI:::::::DG:: HQ3072A :::::::::::::::::::S::Q:::::::::I:V::::::I::::T::::::::::::: HVO_0393 :::::::::::::::::::E::Q::V::::::L:V:::::::::::::::::::::AG:: Hbo1110 :::::::::::::::::::E::Q:::::::::::V:::::::::::N::::::::::::: NP0504A :::::::::::SA::::::::::::::D::::::V:::::::::::::::::::::DG:: Hut1003 :::::::::::PA::::::::::::::D::::::::::::::::::R:I::::::::::: Hmu0338 :::::::::::P:::::::::::::::E:::::::::::::::::::::::::::::H:: rrnAC2116 :::::::::::P:::::::::::::::D:::::::::::::I::::Q:I::::::::::: consensus DIVATGTPEDVARTEDSHTGRYLRDLLPAVDIEGPRADRR-------------------- #oth 42..5....41.1325.1..1....4..41142...311211111111111111111111 VNG2636 :V:::::::A::::D::::::::::K:::::R::::SG:E:::::::::::::::::::: hla0680 EL::N::::::::E:::::::::::M::::::A:::D::::::::::::::::::::::: HQ3072A ::::V::::SI:::DT:Y::Q::::H::D:::A::::::DNTTADSITETDTSTDTNMNQ HVO_0393 T:::S::::EI:ANP::::::::::Y::D::E::::S::::::::::::::::::::::: Hbo1110 EV:::::::E:::V:Q::::::::::::D:E:D:::S::::::::::::::::::::::: NP0504A ::::E::::T::::DA:::::::::H:::::M::::GGK::::::::::::::::::::: Hut1003 AV:::::::T:::::G:Y::::::::::GI:L:::::::E:::::::::::::::::::: Hmu0338 T:::E::::::::N:E:Y::Q:::::::K::L:::::::D:::::::::::::::::::: rrnAC2116 VL::Q::::::::::A:Y::Q:::::::N::L:::::::D:::::::::::::::::::: consensus ----------------KP--APAADDD- #oth 1111111111111111521133324..1 VNG2636 ::::::::::::::::::::--:LS::: hla0680 :::::::::::::::::::::-V::::: HQ3072A TTANTNTNPKSDSDGEE:::::TTN::: HVO_0393 :::::::::::::::::::::KVTN::D Hbo1110 :::::::::::::::::::::K::S::: NP0504A ::::::::::::::::--::-R::G::: Hut1003 ::::::::::::::::LA::S:P:A::: Hmu0338 ::::::::::::::::VA::Q::::::: rrnAC2116 ::::::::::::::::TAAEQ:::::::