| ||||||||||||||||||||||||||||||||||||||||
| Pairwise sequence scores | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Consensus score | 6599 | HQ1460A | VNG0163 | NP0538A | Hut1187 | rrnAC2532 | Hmu0289 | hla0404 | HVO_0552 | Hbo0977 |
| 4489 | HQ1460A | 6904 | 3638 | 3744 | 4021 | 3874 | 3976 | 4049 | 4212 | 4356 |
| 4666 | VNG0163 | 3638 | 6423 | 3868 | 3907 | 4049 | 4174 | 4133 | 4161 | 4125 |
| 4772 | NP0538A | 3744 | 3868 | 6527 | 4066 | 4259 | 4367 | 4234 | 4233 | 4218 |
| 4916 | Hut1187 | 4021 | 3907 | 4066 | 6831 | 4544 | 4547 | 4302 | 4286 | 4306 |
| 5207 | rrnAC2532 | 3874 | 4049 | 4259 | 4544 | 7649 | 5141 | 4517 | 4487 | 4477 |
| 5309 | Hmu0289 | 3976 | 4174 | 4367 | 4547 | 5141 | 6846 | 4658 | 4589 | 4543 |
| 5327 | hla0404 | 4049 | 4133 | 4234 | 4302 | 4517 | 4658 | 6876 | 4922 | 4851 |
| 5317 | HVO_0552 | 4212 | 4161 | 4233 | 4286 | 4487 | 4589 | 4922 | 6830 | 5194 |
| 5378 | Hbo0977 | 4356 | 4125 | 4218 | 4306 | 4477 | 4543 | 4851 | 5194 | 6873 |
1109 symbols consensus ------------------------------------------------------------ #oth 111111111111111111111111111111111111111111111111111111111111 HQ1460A :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: VNG0163 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP0538A :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: Hut1187 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: rrnAC2532 MALDSPVGRRLGLVLQSRSNGVGPDQLFGDSELDHRAVCVIGEKGAERLAGPERGVVGRD Hmu0289 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: hla0404 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: HVO_0552 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: Hbo0977 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: consensus ------------------------------------------MEATGIVGEFLSLKAETD #oth 1111111111111111111111111111111111111111112343...11124.13321 HQ1460A :::::::::::::::::::::::::::::::::::::::::::TSQ:::D::F::R:::: VNG0163 ::::::::::::::::::::::::::::::::::::::::::---M:::D::QA:::::: NP0538A ::::::::::::::::::::::::::::::::::::::::::-M:S:::::YFE:R:SAS Hut1187 :::::::::::::::::::::::::::::::::::::::::MT:::::::::F:::DGA: rrnAC2532 SLCCVHTRPYGLWPLHWPRPAAATTLSRPAILTPRTATRTCMT::::::::::T::EG:: Hmu0289 :::::::::::::::::::::::::::::::::::::::::MT::::::::::::::DS: hla0404 ::::::::::::::::::::::::::::::::::::::::::-MP::::::::D:::::: HVO_0552 :::::::::::::::::::::::::::::::::::::::::::TTQ::::Q:::::E::: Hbo0977 :::::::::::::::::::::::::::::::::::::::::::TSQ::::::::::S::: consensus ADLLAMQCGDFYEFFAEDAELVADELDLKVSQKSSHGSSYPMAGVPVDDLTPYLKALVER #oth ..2.1..2.......22..13.241...2..11.11.2..1.....221....132.1.. HQ1460A ::::T:::::::::::::::::SA::::T::E::::::::::::::I::::::::S:::: VNG0163 :::::::V::::::::A::RT::SV:::Q::E::N:::::::::::::::::::A::::: NP0538A :::::::M:::::::G::::::G::::::::ER::G:E::A::::::::::::::::A:: Hut1187 :::::::V:::::::GA:::T:::::::Q::::::::::::::::::NE:::::T::::: rrnAC2532 ::::::::::::::::::::I::::::::::::::::::::::::::::::::VS::::: Hmu0289 :::::::::::::::D::::I::::::::::::::::A:::::::::::::::VS::::: hla0404 ::I:::::::::::::D:::::::::::T:::::::::::::::::LSE::::V:::::: HVO_0552 ::::::::::::::::D:::T:GR::::::::::::::::::::::LN:::::::::::: Hbo0977 ::V:T::::::::::GD:::F::E:::::::::::::::::::::::::::::::V:::: consensus GYRVAVADQHETDDGHARE-ITRVVTPGTLLETTDADARYLAAVV-----------DAGG #oth ..1..1.1.41223.2522213121....112141231211.12.121111343555434 HQ1460A :::::::::Y:A:::DHYRR:S:::::::::S:D::::::I::::GD::::LTATETTET VNG0163 :::::::E:S:::A:DIERE:E:::::::::AS::::P:::::::::::::::::RE::: NP0538A :::::::::R:::::IV:::V::T::::::V::D::::K:::S:::::::::::::YENN Hut1187 ::H:::::::::::::::K:VEKI:::::::S::::G::::::I::::::::::::-E:E rrnAC2532 :::::I::::::EN:::::::::::::::H:::G:ES:Q::::::::::::REASR:S:D Hmu0289 ::::::::::::A::::::::::::::::H:::::DA:Q::::::GTGGDSSDPVAG:D: hla0404 :::::::::Y::E::::::::::::::::::::A:D:::::::I::::::::REGD::D: HVO_0552 :::::::::Y::ES:DL:REVK:::::::::::SR:::QF::::::::::::::::TD:D Hbo0977 :::::::::FDGE:::Y:K:::::A:::::::::::::::I:SM::::::::::AP:DDE consensus GYGLAFADVTTGQFFVTQVADADAAY---TELYRFDPAEVLPGPTVRNDDEFLGRLRERT #oth 63.1.3411...3.4214422432471222..12.3.1.2....41.41.331431.231 HQ1460A TI:I:::E::::S::IGD::::ET:::::A::T::::V:I::::::::A:::IR:::DG: VNG0163 DW::::V:::::::R::RG::RAD:V:::::::::A::::::::AL:G::D:::V::::: NP0538A E::::LC:I:::::RA:A:SGP:::DRAL::::::G:V:L:::::::T::S:::Q::::L Hut1187 AW::::::::::E::::::::R::VF:::S:::::::::::::::::A:::MIE:::::: rrnAC2532 T::I:AT:::::::Q:::LD::::GE:AL::::T:G:::I::::EL:::::::D:::::: Hmu0289 S::::V::::::::H:::LDGP::RTRIQ::::K::::::::::DL:G::D::D:::::: hla0404 P::::L::::::R:L::E:D:EGDLR:::A::::::::::::::R:::::RL::AV::DL HVO_0552 :V::::S:I:::::L::EA:TV:D:A:::A:::::A:V::::::EL:S:::T:S::::A: Hbo0977 :V:::::::::::::::ETD:::::::::S:::::S:V:I:::::::G::D::S:::QD: consensus DASLSLHDTEAFAPGRARHRVREQFGRETVDSVGI-DSDLAVRAAGAVLSYVEETGVGVL #oth 11321213331.22...3141211..64231111223434133.1.1225.122114.21 HQ1460A ::TV:SFE:A:::L:::::ILS::::TTAI::LN::ET:V:IQ::::I:T:ID::DT::R VNG0163 ::T:T:::AG::DA:::T::::::::DGVIE:L:VAADGPV::::::AVG:IAAADE::: NP0538A :GR:T::::D::::::::A:LG::::-DA::A::L:E::A::A:::::ID::D:::::A: Hut1187 :::V:::A::::::::::::L:::::T::IE::::G:AES:IA:G:::::::::::Q::: rrnAC2532 ::A:T:::SAS:E::::S:T::::::S::::::::G:QNV:::::::::::::D::::T: Hmu0289 ::A:TV:TE:S:::::::::::DH::P::::::::A:D:A:IC::::::::::D::::T: hla0404 SG:V:VF:A::::::::K:A:::::::::A::::::::E::L:::::::G::::::A::: HVO_0552 :::F::FA:::::::::::A::::::AS::::::L::::::T::::G::A::::::A::: Hbo0977 ::::::FEAD:::::::K:V::D::::::LE:::L:N::::::::::::R::::::T::: consensus ASITRLQAYGARDHVELDATTQRNLELTETMHGDR--DGSLFDTIDHTVTSAGGRLLREW #oth 2121.115246411141.2..1.......1.312411311.2311...2111.4.3.32. HQ1460A :A:::::PLDSDT:LA::T::R:::::::::::::GG::T:LG:::::A::::H:Q:::: VNG0163 ::VS:I:PF:GG:::::::::::::::::::T:GS::::::LA:::::ASA::::R:AA: NP0538A :::::::::APD:::S::G::::::::::P:TEGG::Q-T::A:V:::E::::R:::EA: Hut1187 ::M::::R:::S:::::::::::::::::::R:E:::T:::L:::::::::::T:T::A: rrnAC2532 :AV:::::::E::::D:::::::::::::::Q::S::S::::::::::::A::::::QQ: Hmu0289 :::::::S:::T:::N:::::::::::::::Q:GT:::::::::::::A:A::A:::::: hla0404 ::::::T:::DG:::AV::::::::::::::R::A:::::::E:V:::::A::::::::: HVO_0552 R:M::::V:HPS:LL::::::::::::::::::::::S:::::::::::::P:::::::: Hbo0977 Q:M::::T:ET:::L::::::::::::::::::ET::::T:V:A:::::::P:::::::: consensus LTRPRRDRAELDRRQDAVEALADAALARERLRETLGDAYDLERLASRAASGSADARDLLA #oth 23..31414115..332131.352111.122311.333.....1.1123112.1.32.12 HQ1460A IM::Q:EQT:IT::L:CI:::V::P:::::IA:::NGS:::::::A:CI:ER:::T:::R VNG0163 V:::T::::::::::A::G:::::::::DA:GDV::EI:::::::::::::R:::T:::R NP0538A :K::LKR:G::::::Q::A::VGD:::::A:::::SS::::::V::::VA:N:::DA::R Hut1187 :Q::::S:ET::::G:S:::::TE:M::::::DV::::::::::::K:::::::::::R: rrnAC2532 :Q::::N::::Q:::SC:A::SE::M::::I::::S:::::::::A::T:::::::::R: Hmu0289 :Q:::::::::T:::SCIA::TE::M:::Q:C:::S::::::::::K:V:::::::::R: hla0404 I:::::::E::N::L:::::::S:::::D::::::::::::::::A::T::::G::E::S HVO_0552 ::::::::D::A::H::::S::S:::::::V::V:DG::::::::::S:::::G:SE::S Hbo0977 :::::::::::E::L:::T:::RE::S:::V:D::DGV:::::::A:::::::G:S:::S consensus VRDTLALLPAVADAITETP-LAESPLADVLARPDREAAADLRAELADALADDPPKTVRQG #oth 2321.332231333243343.12..2343243413231341231.33.1121..1.332. HQ1460A I:E::EI::TLDEV:::SI::S::::MQ:VT::TEDTVKVV:D::TA::V:E::::I:D: VNG0163 ::::::A::D::::L:T::E:::::AR:::::V::A::::V:::::::::::::::LSE: NP0538A A:E::G:VEDLRTR:DDAAR:SS::V::LF:DL:V::VET::S::-E:::::::::LHE: Hut1187 AV:::E:FET:RAIVR:::T::::::STW:DE::PA:V:T:A:D:DA:IV::::G:ITE: rrnAC2532 :QE:::::GQ::::V:::ER::::::::A:DGA:::::DS:A:::DS::VA:::G::::: Hmu0289 :AG::S::ET:E:V:D:DDR::D:::::A:D:L:::VV:::A:::DA::V::::G::::: hla0404 :::S:::V::L:::VSG:A:::D::V:A::E:I:::R::T:HD:::::::E:::::KT:: HVO_0552 :::::SV:::L::::EG:E:::D::::E:VS::::D::::::TD::::::E::::::T:: Hbo0977 ::::::V:::::E::E:S:::S::::S::V:::::::::A:HD::::::::::::::::: consensus GLFRRGYDDELDELIERHETALEWLDTLADREKRRHGLTHLSVDRNKTDGYYIQVGKSEA #oth .1236.1.32..32323.15153.313.12..2253212.12........1.....1.21 HQ1460A :::QY:::A:::S:R::::::Q::M:K::Q::TET:N:N:::::::::::H:::::::V: VNG0163 ::LQA:::EA::::LAA:DEHRA:::G::::::D:L:I:::Q::::::::::::::N::T NP0538A ::I:::::E:::D:V::::::V::FE:::E::::A:::::VT:::::::::::::::::T Hut1187 :II:E:::A::::V:DE:::::::IE::PE::Q:E::I:::::::::::::::::::::T rrnAC2532 :::K::H::D:::I:DE::A:::::E::P::::E:T:I:::::::::::::::::::::T Hmu0289 :::C::::E:::AV:::::D:::::E::P::::ETT:I:::::::::::::::::::::: hla0404 ::L:V:::G::::::A:::K:N::::R::E::::QY::S:VT::::::::::::::::A: HVO_0552 :::QT:::::::D::::::S:KS:::::::::::D:::S:VT::::::::::::::::V: Hbo0977 :::KH::::::::::DS::E:QR:I:::::::::Q:S:S:VT::::::::::::::::V: consensus DAVPD----HYREIKTLKNSKRFTTDELEEREREILRLEEARGELEYELFCELRERVADH #oth 14..111113.251.2...12.1233..512..311.1.15.212.113.43..131134 HQ1460A :Q::E::::::::::::::::::K::::A::::D::::::S:::M::::::::::QI::Y VNG0163 :::::GEDGA::R::Q:::AT:Y:MA::DSH:::V::I:AE:A:::R:::AA:::::GER NP0538A :::::::::::EG::::::AE:YVFE::R:K:::::::::V::DR:::A::R:::S:::S Hut1187 GK:::::::::ENV::::::E:Y:IA::T::::K:F::::R:HD::RQC:E::::A:::: rrnAC2532 ::::E::::K:QH:::::::::Y::P::D:K::DV:::::R:HDM:::H:QR::A:::E: Hmu0289 :D:::::::R:EG::E::::::::::::Q::::AVF::::Q:H:M:::::GD::::::ED hla0404 :G::E::::::::::::::::::V::::::::::V:::::::::::::::E:::::::AD HVO_0552 :Q::::::::::Q::::::::::V:E::::K::::::::::::D::::::ED::::::R: Hbo0977 :Q::E::::::::::::::::::V:E::::::::::::::S:::::::::::::::::A: consensus AELLQDVGRALAEIDALASLATHAAGNDWTRPELTDGRALDIEAGRHPVVEQTTEFVPND #oth .32..31.122.12.1441..4..1412.2..21326452211........2113..... HQ1460A :AM::T::QVI::::::H::::::VE::::::T:RADHTV:::::::::::::::::::: VNG0163 :AV::::::::::V:::V:::E:::A:Q:V::::VA:DG:::D:::::::::::S::::: NP0538A :::::R:::T:::L:VYC:::A:::KHG::::::::T::I:::::::::::TEVQ::::: Hut1187 :D:::G::Q:::AV:VM:A:::::VR::::::T:R:S::::V:::::::::::::::::: rrnAC2532 :T:::::::T:::L::F::::V::VE:::A::AVV::NE:S::::::::::::::::::: Hmu0289 :T::::A::V:::L::V::::I::VR::::::::::::E::V:::::::::::::::::: hla0404 ::::::::::V:::::::::::::::::::::::A:E:R::V:::::::::R::D::::: HVO_0552 :::::::::TI::V:::::::::::::G:::::::EAG:::::::::::::T::D::::: Hbo0977 :::::::::V:::::V:S::::::::::::::T:::PGPVR::::::::::R:::::::: consensus LRMDD----------------ERRFLIVTGPNMSGKSTYMRQAALITLLAQVGSFVPARS #oth 1221311111111111111112.3.12............1..1.1.2...12......22 HQ1460A :QLE:::::::::::::::::::N::L::::::::::::L::V:::::::HA::::::AA VNG0163 A:F:A::::::::::::::::S:::QV:::::::::::::::V:V:V:::::::::::DA NP0538A :YL:R:::::::::::::::::::::L:::::::::::::::::::::::::::::::D: Hut1187 :::::::::::::::::::::D::::::::::::::::::::::::V::::I:::::::: rrnAC2532 :Y:::::::::::::::::::D:Q:::::::::::::::::::::::::::::::::::: Hmu0289 ::::GATSPPDQERASGHADAD:Q:::::::::::::::::::::::::::::::::::A hla0404 ::L:G::::::::::::::::::G::::::::::::::::::::::Q::::A:::::::T HVO_0552 :::::::::::::::::::::::G:::::::::::::::::::::::::::::::::::: Hbo0977 :Y:::::::::::::::::::::G::::::::::::::::::::::V::::::::::::: consensus ATVGLVDGIYTRVGALDELAQGRSTFMVEMQELSNILHSATEDSLVILDEVGRGTATYDG #oth .21.2...11..........1.........1..12...1.131.1.1..........1.. HQ1460A ::I:A:::::::::::::::::::::::::::::K:::::SSE::::::::::::::::: VNG0163 :RI:::::::::::::::::G:::::::::E:::R:::A::S::::V::::::::::::: NP0538A :R::::::VF::::::::::::::::::::E::::::::::::::::::::::::::::: Hut1187 :E:::::::::::::::::::::::::::::::A:::::::::::::::::::::::::: rrnAC2532 :::::::::F::::::::::::::::::::::::::::::::E::::::::::::::F:: Hmu0289 :::::::::::::::::::::::::::::::::::::::::D:::::::::::::::::: hla0404 :::::::::::::::::::::::::::::::::::::::::A::I::::::::::::::: HVO_0552 ::::V::::::::::::::::::::::::::::::::::::::::::::::::::::::: Hbo0977 :EI:V::::::::::::::::::::::::::::::::::::::::::::::::::::::: consensus ISIAWAATEYLHNEVRA----KTLFATHYHELTTLADHLDRVENVHVAAD---------- #oth 1.........1222232211131..........2.112133.4.....121111111111 HQ1460A :::::::::::SAAQSTAPSPRV::::::::::::::RIAG:S::::::E:::::::::: VNG0163 :::::::::::::::::::::T:::::::::::A::::::A:V::::::E:::::::::: NP0538A :::::::::::::::G:::::F:::::::::::::::E:P::::::::VA:::::::::: Hut1187 V::::::::::SSAQS:SPSP:::::::::::::::::ISG:::::::V:EPAGGTDGDD rrnAC2532 ::::::::::IV:SIQS::::::::::::::::A:GEE:PT:::::::V::::::::::: Hmu0289 :::::::::::::::::::::::::::::::::S::::::::H::::::::::::::::: hla0404 :::::::::::::::::::::R:::::::::::::::::P::::::::V::::::::::: HVO_0552 :::::::::::::::::::::::::::::::::S::::::::A::::::::::::::::: Hbo0977 :::::::::::::::::::::::::::::::::S::::::::A::::::E:::::::::: consensus -------ERDGDVTFLRTVRDGPTDRSYGVHVADLAGVPDPVVDRARAVLDRLREEKAIE #oth 112233333112.......32.111....1...3.....4..12.135..32..213.11 HQ1460A :::::::::N:::::::::ES::A:::::I:::E::::::::LT:::D::ST::ADE::: VNG0163 :::::::::::A::::::::::A::::::::::A:::::E:::::::G::::::::N:V: NP0538A :::GDPEDG::::::::::EP:A:::::::::::::::::::::::G:::S::::DR:V: Hut1187 AGPPTTDGA:D::::::::::::A:::::::::T:::::::::S:::E::RK::ADE::D rrnAC2532 :GEPRSAGS::::::::::::::::::::::::::::::E:::::SQ:::::::DD:::: Hmu0289 ::::::::S::::::::::::::::::::I:::::::::E:::::S:T:::::::::::: hla0404 :::::::K:::E::::::::::::N::::::::::::::A:::S::GT:::::::::::: HVO_0552 :::::::::::::::::::V:::::::::I:::::::::R::::::GD:::::::::::: Hbo0977 :::::::::::::::::::Q:::::::::I:::::::::K:::S::DN::EK:::::::: consensus AK-----------------GSASGE--PVQAVFDLDSGQFREADAGESG----------- #oth 2311122222222222222.345432224.2...132.4334335545323222221222 HQ1460A VETQNHADTSKRDQEENMT:GDKSAETTQ:V:::VN::DI:V:E:::NT::::::::::: VNG0163 :::::::::::::::::::::-A::::S::::::V:::G:VD-------::::::::::: NP0538A ::::::::::::::::::::GD::::::::T::::SD:::::-------::::::::::: Hut1187 VQ::::::::::::::::N:R::E:::TR:V:::::::EL::S:TDD::::::::::::: rrnAC2532 IR:::::::::::::::::::EQNDGGTT::::::::::::DGA:QSG:AAA:::::::: Hmu0289 :::::::::::::::::::::G:S::::::T:::VNA:G:KR::ES:TA::::::::::: hla0404 :::::GGARGGGGERGGFT:T:D:D::TK:V::::S::S:S:S:DA::TAAG:::::::A HVO_0552 :::::::::::::::::::::GTS::::::::::VG:::MKV:E::D::GDGDDSAGSGA Hbo0977 ::::::::::::::::::::GE:DK::::::::::S::E:SSGESSGQAGSGQTTDGQIV consensus -----------------G--A--G--ETANGEATAESDEGDA----LDPETEAVLDELAE #oth 223223232133333454553453554436466434344544111141211511231.43 HQ1460A :::::::::::::::ENQTTPTSDNRKLK:NR::S::P:HAR::::V:SD:KE:IN::QS VNG0163 :::::::::::::::::-::-::-::--------DAG:D:E:::::D:::AA::::::RT NP0538A :::::::::::::::::-::-::-::---::DNS:D::::GE:::::::::A::V::::D Hut1187 ::::::::::::::::T:DPPADQMGD:DETVGGGTGPIV:Q::::FGEDAP:::EA:ES rrnAC2532 :::::::::::::GSTAEPV:TD:DP:H:P:::A::GPK::ERAAS::S::::::S::T: Hmu0289 :::::::::::::::::-::-::-::-::D:GTA::ASD:G-::::::::::::VE::T: hla0404 PGSGGGRNGATPGSASD:ASGSA:TA:::GAAE::::A:T:R::::F::::R::IE:::D HVO_0552 PANGATGTGAAGNGSVDAAA:VE:SA:ADRAGTGSD:EAEA:::::::::::::::::QS Hbo0977 DGQTADGQAASADQRES:VA:AQQSQHA::::S::GR:ASR:::::T:::ADEI::::R: consensus LDVNETPPVELLAKVQEWQRRLDDN---- #oth 2123212.121133.12..63.3342211 HQ1460A ::IES:A::T::QT:EQ::KQ:T:ADNEE VNG0163 VELA::S:::::GT::A::D::E:-:::: NP0538A :E:D:::::::M:R:::::Q:::GE:::: Hut1187 ::IE::::::::GE::::::::E--:::: rrnAC2532 :::::::::::M:::::::AE:::E:::: Hmu0289 :::::::::::::T::Q::EQ:::G:::: hla0404 V::A::A:::::SR:::::E:::E:R::: HVO_0552 T:::D:S:LD:M::::A::SK::GGDGE: Hbo0977 T:::SNA:LDIM::::::::::S::D:::