[L] (RecA) COG0468 RecA/RadA recombinase 9 genomes BUD0277 9 proteins a Hsa Halobacterium sp. NRC-1 b Hma Haloarcula marismortui f Hvo Haloferax volcanii g Hbo Halogeometricum borinquense h Hmu Halomicrobium mukohataei i Hut Halorhabdus utahensis j Hla Halorubrum lacusprofundi q Nph Natronomonas pharaonis x Hwa Haloquadratum walsbyi VNG1711 rrnAC1595 HVO_2547 Hbo2306 Hmu2020 Hut3026 hla0849 NP4888A HQ2825A

Pairwise sequence scores
Consensus score	1754	HQ2825A	NP4888A	Hut3026	VNG1711	hla0849	Hmu2020	rrnAC1595	HVO_2547	Hbo2306
1334	HQ2825A	2367	1117	1127	1093	1264	1159	1212	1233	1281
1407	NP4888A	1117	1787	1223	1228	1211	1296	1297	1218	1275
1355	Hut3026	1127	1223	2448	1206	1224	1269	1311	1240	1238
1370	VNG1711	1093	1228	1206	1776	1196	1251	1326	1148	1227
1434	hla0849	1264	1211	1224	1196	1768	1189	1233	1335	1379
1430	Hmu2020	1159	1296	1269	1251	1189	1783	1401	1219	1311
1451	rrnAC1595	1212	1297	1311	1326	1233	1401	1777	1229	1380
1403	HVO_2547	1233	1218	1240	1148	1335	1219	1229	1736	1418
1531	Hbo2306	1281	1275	1238	1227	1379	1311	1380	1418	1727

417 symbols
consensus       ------------------------------------------------------------
#oth            111111111111111111111111111111111111111111111111111111111112
HQ2825A         MADEHDEDTNDQTDETEINSGSEEVDHVDASETDADADTDTDTDTDASAVDSEPDQGTDT
NP4888A         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
Hut3026         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
VNG1711         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
hla0849         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
Hmu2020         :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::M
rrnAC1595       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
HVO_2547        ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
Hbo2306         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::

consensus       --------DADDEAEELEDISGVGPSKAEALREAGFESVDDVRAADQSELADVDGIGNAL
#oth            321324544662342112.1..1.332.23.211.21122.22212112.232211....
HQ2825A         DADTDSESEVT:D::AF:::::::SDR::S:::::YD:FE:I:::S::A:::::D:::::
NP4888A         :::::MSD::A::Y:::T::::::EA:::T:::::I:T:::L:EKS:D::::I::V::::
Hut3026         ::::::::M::E:PT::T:V::I:EET:G::::S:::TI::L:E::EDA:TE:T::::::
VNG1711         ::::::MS:EN:TP:::A:::::::::::::A:::::::A::Q::::::::EA:::::::
hla0849         ::::::::----M:::::::::::::::DP::A::Y:T:E::K::S::::SQ:::V::::
Hmu2020         VDDEDATEQG:::LT::T::::::D::::::::::::T:::::G::::Q::N:S:V::::
rrnAC1595       MADNEEDVE:EE:YT::T:::::::::::S:::::::::E:::G::::A::::S::::::
HVO_2547        ::::::::-MSE:IT:::::::::::::D:::::::::::::Q::S:::::E::::::::
Hbo2306         ::::::::MS:E:IQ:::::::::::::D::S:::Y:::E::K::N:::::::S::::::

consensus       AARIKADVGGLEVDEETEAEVEEETDE----D----------------------------
#oth            .........31..34111111.22343222221111111111111111111111111111
HQ2825A         :::::::::E:::ST::D:A::V:S::::::-::::::::::::::::::::::::::::
NP4888A         :::::::::D::::A::DT:::D::P:E::A:::::::::::::::::::::::::::::
Hut3026         :::::::::DV::::DA:::I::SEESTADS:ADASDDAADEADAEPEEDDAAAYDDLTD
VNG1711         :::::::::::::EAD:D:::::VGGD:::::::::::::::::::::::::::::::::
hla0849         ::::::::::::::::AD::I:D::::EEEA:::::::::::::::::::::::::::::
Hmu2020         :::::::::S:::ADD::::::::ETD::::-::::::::::::::::::::::::::::
rrnAC1595       :::::::::::::ES:::::::::GG:::::-::::::::::::::::::::::::::::
HVO_2547        :::::::::::::SD:A:::::D:SEAE:::L::::::::::::::::::::::::::::
Hbo2306         :::::::::::::S:::::::::::::::::-::::::::::::::::::::::::::::

consensus       ------------------------------------------------------------
#oth            111111111111111111111111111111111111111111111111111111111111
HQ2825A         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP4888A         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
Hut3026         ISGVGEGTAENLREAGFETVEDVARAEQSDLTEVEGIGNALAARIQADVGELDVSEAETA
VNG1711         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
hla0849         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
Hmu2020         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
rrnAC1595       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
HVO_2547        ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
Hbo2306         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::

consensus       -------EEEEDEDVETELRPRGLADKTPELDDEEARLLTQRHREGKPQFNRQDYHKKKR
#oth            111111123253221....11..122.1.3.1212221.42131111.1.11..1.11..
HQ2825A         ::::::::V::TDT:::::::::H:N:::D::P:T::A:G:K::::::A:R:::H:M:::
NP4888A         :::::::D:A:A:::::::Q:::::::::::S:::E::::E:K:V::::::::::::D::
Hut3026         EVEEVGG:A:AE:AA::::QA::H:E:::::S:::::::V::R:::::::::::H:::::
VNG1711         ::::::::ADT:A:::::::A:::TE:::D:SED:Q:::QK:RSVNT:::::::::::::
hla0849         ::::::::ADT::::::::::::H::::::::::T::A:A:K::::::::::::::::::
Hmu2020         :::::::--:S:::::::::::::V::::T:::::E::::::D:V::::::A::H:::::
rrnAC1595       :::::::-:AP::::::::QA:::TE:::D:S::D:::::::::V:::::::::H:::::
HVO_2547        :::::::::::A:A:::::Q:::H:::K:Q::::T:EA:A:KR:::::::::::::::::
Hbo2306         :::::::::AVE::::::::::::::::::::::T:AA:::K::::::::::::::::::

consensus       TPTSWRRPRGGLSKQRRGIKGKGDTVEAGFRSPKAVRGLHPSGFEEVRVHNVDDLEGVDG
#oth            211...2.1.5.....111.1..23....1.1.213.11.....1..2.2.2...1.1.1
HQ2825A         ::E:::K:::A:::::::::::::L::::Y:::T:A::::::::::::::::::::::::
NP4888A         ::::::::::T::::::::::::P:::::::T::E:::K::::::::Y:E::::::::::
Hut3026         VS:::::::::::::::::::::::::::::T:N:I:::::::::::::::L::::::::
VNG1711         ::::::::K:T::::::::::::::::::::T:T::::K::::::::::::T:::A:::P
hla0849         I:::::K::::::::::RM:A::PV::::::::::S:D::::::K::::::T::::::::
Hmu2020         I:::::A:::K:::::::::::::K::::::::T::::K:::::::::::::::::::::
rrnAC1595       VS::::K:::Q::::::::::::::::::::::T::::K:::::::::::::::::::::
HVO_2547        ::::::::::::::::I::::::AK::::Y:T:::A:::::::::::::F:T:::::I::
Hbo2306         ::::::K:::N::::::::::::::::::::::::A:::::::::::H::::::::::::

consensus       DTEAVRIASKVGARKRERIEEVAEDRGIRVLNPTYVEVEVED---------------
#oth            .21.2..1.2..1....1..1411231........1..1.43321111111111111
HQ2825A         ::::I:::::::G:::::::D::AE:E:::::::::::::G:DADADTVIATEATDE
NP4888A         :R::A::G:T::::::::::::::EE:::::::::::::::E:::::::::::::::
Hut3026         :SQ::::::::::::::::::R::SE::::::::::::::N:D::::::::::::::
VNG1711         ::::A::::::::::::::::H::SQ::::::::::::::::NE:::::::::::::
hla0849         ::Q:::::::::G::::L::DE::E:::::::::::::::N:E::::::::::::::
Hmu2020         :R:::::::::::::::::::::::E:::::::::E::Q::-:::::::::::::::
rrnAC1595       :::::::::::::::::::::E:::A::::::::::::::SE:::::::::::::::
HVO_2547        ::Q::::::S:::::::::::AC:::E:::::::::::::DN:::::::::::::::
Hbo2306         :::::::::S:::::::::::A::::E:::::::::::::DE:::::::::::::::