|
Pairwise sequence scores | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
Consensus score | 3695 | NP1782A | HQ2729A | hla1429 | HVO_2427 | Hbo2136 | VNG1622 | Hut0666 | rrnAC1744 | Hmu2107 |
2699 | NP1782A | 3666 | 2196 | 2282 | 2372 | 2300 | 2298 | 2309 | 2281 | 2261 |
2582 | HQ2729A | 2196 | 3869 | 2373 | 2521 | 2541 | 2088 | 2095 | 2051 | 2102 |
2794 | hla1429 | 2282 | 2373 | 4073 | 2677 | 2647 | 2232 | 2288 | 2335 | 2284 |
2941 | HVO_2427 | 2372 | 2521 | 2677 | 3684 | 2835 | 2328 | 2266 | 2328 | 2310 |
2810 | Hbo2136 | 2300 | 2541 | 2647 | 2835 | 3676 | 2241 | 2163 | 2309 | 2257 |
2673 | VNG1622 | 2298 | 2088 | 2232 | 2328 | 2241 | 3821 | 2460 | 2431 | 2405 |
2736 | Hut0666 | 2309 | 2095 | 2288 | 2266 | 2163 | 2460 | 3825 | 2636 | 2718 |
2866 | rrnAC1744 | 2281 | 2051 | 2335 | 2328 | 2309 | 2431 | 2636 | 3856 | 2957 |
2803 | Hmu2107 | 2261 | 2102 | 2284 | 2310 | 2257 | 2405 | 2718 | 2957 | 3780 |
568 symbols consensus ----------------------------------------MVDWTEKYRPSTLSEVRGND #oth 111111111122222122222222222222221222222214....31..21.11....1 NP1782A :::::::::::::::::::::::::::::::::::::::::S::::A:::T::::::::N HQ2729A :::::::::::::::::::::::::::::::::::::::::T::::R:::T:::A::::N hla1429 VVTGRGASTTESQARTAGSPSGRDGRCSAITKRGSLLAPV:A:::::::::::::::::: HVO_2427 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::N Hbo2136 :::::::::::::::::::::::::::::::::::::::::::::::::::::A:::::N VNG1622 ::::::::::MPCVATERWGKTVVAGAPQHLTRTPAYGVS::::::::::AS:::::::: Hut0666 :::::::::::::::::::::::::::::::::::::::::T::::IH:::::A:::::: rrnAC1744 ::::::::::::::::::::::::::::::::::::::::-M::::::::T::::::::: Hmu2107 :::::::::::::::::::::::::::::::::::::::::A::::R:::T::A:::::: consensus KARDALAEWAESWDDHREAVVLHGSPGIGKTSAAHALANDMGWETVELNASDQRTKDVIE #oth 2...1142.122.2..1.1.111.1..1..........2.12.212.1....2..3.111 NP1782A :::::FE:::KA:E::::::I::::::V:::::::::::::::PVL:M::::A::::E:: HQ2729A A:::EFI:::::::::H:S:::::A::V::::::::::S::::::::::::::::S:::: hla1429 :::::F:D::R:::::H::::::::::V:::::::::::::::::::::::::::A:::: HVO_2427 ::::::::::KT:::::::::V::::::::::::::::A::::::::::::::::G:::: Hbo2136 :::::::::GKT::::::::::::A::V:::::::::::::::::::::::::::A:::: VNG1622 T::::::::::T:P:::::::V::::::::::::::::::A::DV::::::::::A::V: Hut0666 ::::::R::::::P::::::::Y::::::::::::::::::D:P:I::::::S::::::: rrnAC1744 ::::::KK:::T::::::::I:Y::::::::::::::::::E:P:I::::::S::::::N Hmu2107 ::::::R::::::E::::::I:::A::::::::::::::::E:P:I::::::S::::::: consensus RFAGRAAKNATLAG--GGAG--------RQLVILDEADNIHGNYDRGGARAITRLVKEAN #oth 22..1..312..2211333.33312223.2.121.....1.224....34.2.4.11315 NP1782A :::::::S::::G:::---::::::::::::I:::::::L:QHK:::::A:M:::::D:T HQ2729A :L::::::::::::::AVS:TTS::::T:::I:M:::::::YQ:::::KQ:V:T:L:D:: hla1429 :::::::R::::G:SAA:G:AAGGDTAS:::::::::::::::::::::S:::E::::SG HVO_2427 ::::::::::::::::SS::TS:::::T:::::::::::::::::::::S:V:::::SSS Hbo2136 :::::::M:T::::::AS::DANGEREG:::::M:::::::::::::::G:::::::KS: VNG1622 :V::E::RSG::T::::SG::::::::::K::L::::::L:::I::::SA::::::DD:P Hut0666 QV::E:::SG:::Q::::S::::::::::R:::::::::L:::V::::T::::S:::::Q rrnAC1744 :V::E:::SG::TA::::G::::::::::R:::M:::::::::A:::::::::A:::::S Hmu2107 KV::E:::SG::TA:::::::::::::::R::VM:::::::::A:::::::::S:::::: consensus QPIVLIANEYYEMSRGLRNACRDIEFRDVSARSIVPVLRDICRQEGIEFESDALDRIAEM #oth ..21.1..11.1.131..112211....113........121.2.32311321.641..5 NP1782A ::V:::::D:::::S:::S::::V:::::::::::::::::::::NV::DE:V:QE:::A HQ2729A :::::::::::D::::::::AQ::::::I::::::::::N:L:K:N::::EA::KQ:::V hla1429 ::::::::D::D:A::::::TQE::::::::::::::::::::K::::::::::E::::R HVO_2427 :::::::::F:D:::::::::QE::::::::::::::::::::K::L::::::::::::: Hbo2136 :::::::::::D::S:::S:T:E::::::::::::::::::L:K:::::D:::::::::T VNG1622 :::::V::::::::SS::S:::E:::::::K:::::::::V::R:DVTY:E:::AA:::Q Hut0666 :::::::::F::::K:::::::::::::::T::::::::::::::DVG::KE::RK:::: rrnAC1744 ::MI::::::::::N::::N:Q::::::::P:::::::::L:::::V:Y:::::QEL::Q Hmu2107 ::MI:::::F::::N::::::D:::::::GK:::::::::VL:::E:A:DDE::TE:::: consensus NSGDLRGAVKDLQAIAEGRDRLTADDVVTGERDRTEGIFEYLDAVLKEASAQEALQAAYD #oth .3.1..2.11...143234253232112213..22512.411.5111134121.1231.1 NP1782A :R::::::::::::--RE::GEIKPEGSE:S:::::D::AF:::::::E::E::::T::A HQ2729A ::::::A:I::::TTV::S::I:V:::K::G:::AM:L:SF::S::::DA:E::::NS:: hla1429 :R::::::IN::::AT::::SIAVE:::::D::KAL:L:P::::::::E::E::::S::A HVO_2427 ::::::S::N:::::::::EKI:EE:::M:D:::SV:L::F:::::::E:::D::YT::: Hbo2136 ::::::S:::::::A:D:A::::VE:::::S::KAI:L:::I:S::::DT::D:I:S::A VNG1622 :A::::S::N::::L::QDRT:::::::M::::::::V:D:::D:IATH::R:::::::: Hut0666 :D::::::IN::::::::::TV:E:::::S:::::TD::SF::T:::::D:::::E:S:: rrnAC1744 :::G:::::::::::::TTE:::::::::::::T:::::::::V:::::G::D::E:S:: Hmu2107 :D::::::I:::::L:::::H:A::::::::::T:::::D:::LL::::GP::::E:S:: consensus VDETPDDLIKWIEDNVPKVYEGDELARAYEFLANADVWLGRVRATQ-NYSYWRYATDNMA #oth ......1133.11111232.324.122..22.11..3.11..211111.32....2.131 NP1782A ::::::N:LQ::::K:::::::::::D:::H::D::::::::::::::::::::::::V: HQ2729A ::::::::L::V::K::L::DDA:::::::::S:::I:TN::Y::DY::RW:::::::L: hla1429 ::::::::T::::N::LD::DPS:VV:::D::::::::::::::::::::::::::::A: HVO_2427 ::::::::T::V::K:SL:::P:::::::D::::::R:::::::::::::::::::::L: Hbo2136 :::::::QV:::::K:SM::DD::::::::::::::::::::M::::D::::::::::V: VNG1622 ::::::::LS:VA:::::D:R:G:::D:::::S::::::::::::::::A::::::::V: Hut0666 :::::::::S::::::::D:::A::::::RS:::::R::::::::::::TF::::S:A:T rrnAC1744 :::::::::N:::::M::D:::T::V::::::S:::Q::::::E::::::F::::G:::T Hmu2107 :::::::::N:::::M::E:A:S::TT:::::::::R:::::::K:::::F::::G:::T consensus AGVAAARDGTRGGWTRYGGPPYWSKRDR------TRDYVARQIAATGGVSMATARREVLP #oth 1....2.5432....1..212111321322221311.411351.454.2.23...2322. NP1782A :::::V:QED:::::::::A::R:S::S::::::::::I:TR::ESA:::T::::::I:: HQ2729A G::::::ETQ:::::::::A::R:T::S:::::::::T:V:EV:K:::F::::::TA:I: hla1429 ::::::::::K:::::::R:QF::PS:A:::::::A:E:VG::::KS:C:V::::::::: HVO_2427 :::::S::R::::::::::A::R:T::K:::::::::T:V:K::QN::F::::::::A:: Hbo2136 :::::::NR::::::Q:::A::R:T::K:::::::::E:V:K::ES::F::G::::N::: VNG1622 :::::::RHDH:::::::P:S::R:LGSSRATREK::::::H::E:A:C::::::ND::: Hut0666 :::::::S:EK:::::::P:S::::LG:TRGARD:::D:::A::T:S::::S:::::::: rrnAC1744 ::::::::::K:::::::P:S::::LG:SKGTRN::::::Q::::ID::::R:::::IM: Hmu2107 :::::::E::K:::::::P:S::::LG:SKGTRN:::HI:Q::::VN::::R:::::IM: consensus FLSAMTHHCKNRELTVAMAAAYELDAEHVAFVTGSGETTNKVQSIVEDAEERREEAAVDH #oth 1.323..1.21.21..3.1.5.1212321111....22.1.112.21..42212332122 NP1782A Y::::::::N::::::R:T:R::::::::::I::::K::::::G::::::T:::T::::: HQ2729A ::::I::L::P:S:::G:::W::::EAG:SYI:::::::K::A::::::A:::S::VEA: hla1429 ::E:V:::::P:::::::::::D::EAGI::::::::S::::A::A:::QAL:::RME:: HVO_2427 Y:::I:::::P:::::::::Y::F:ES::S:::::::::::::::::::G:L:::LVEE: Hbo2136 :::TI:::::P:DV::::::W:D::ESA:S:I:::::::::::::::::R:M::SEMEE: VNG1622 ::RVL::::::::::::::::::::T::::::::::::::::A:::A::::::TD::::: Hut0666 Y:ET::::::::::::S:T:::D:::D::::I::::AD:::IA::I:::A::::T::::A rrnAC1744 ::AT:::::R::::::::::T:DME::::S::::::KD:::::D::A:::ALK:::::E: Hmu2107 ::AT::::::::::::::::Q::M::S:::::::::KD:::::::::::::L::::::EG consensus SGGAFAGAE-DA-DDDAAADDDD---------GDGQDAVRGDDADEDDAADDGSDD---- #oth 2312.2244464735555642435344233335446545544234424545454331111 NP1782A G::I::P:VD::QS:TESD:::::::::::::::TLA:FGA:EPK:ESVNREQ::G:::: HQ2729A A:S:::ET:TEEKTNFTGNQ:S:VDVQSHKSAES:D:T::TANTPAE:H:QS:ASETASA hla1429 AE:::::GR:H:A::LG:S:GETTN:::::::AS:TASSS:::G:A:GTT:GDGS::::: HVO_2427 AA:::::M:GVSV::::::::G-::::::::::::T:D:LDR:::T:ADESAE::::::: Hbo2136 :::::E:--:--:---T:SNG:-::::::::::T:N:ESIEN::S:::VL:G:GN::::: VNG1622 :E:::::--:--:----------:::::::::-----:::E:NT:::S:::ETT:G:::: Hut0666 :E:::DPG:T:SSSASGDEQG::QAERAEGATLGS:P:DG::::SM:E::MSAE:E:::: rrnAC1744 :::V:E::SANGG:G:SD::G:APDTDAGEES::Q:VTLAA::GA:S::TS::TTT:::: Hmu2107 :D:::E::SAGETTQ::TGT::THDDT:::::D::GQ:TL:GEPAG::GEA:D::G:::: consensus -----------DEEADDDDGQSGLSDFM #oth 111121232444534343.3.3..21.2 NP1782A ::::::::::TADAEES::::A:::::: HQ2729A TESASDSDAST:TD:::::::A:::E:: hla1429 :::::::::AN:GND::::::A:::::V HVO_2427 :::::::::::-SD:AT:::::::D::F Hbo2136 :::::::::SA:::VE:::N::::D::F VNG1622 :::::::::::-D:DTGA:S:R::DE:F Hut0666 ::::::EGARSG::E:AN:Q:T::G::V rrnAC1744 ::::DDETETAS:A:E:::Q:::::::: Hmu2107 :::::::::::SQ:S::G:Q::::::::