|
Pairwise sequence scores | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
Consensus score | 2220 | hla1654 | VNG1842 | NP2484A | HQ3027A | HVO_2640 | Hbo2202 | rrnAC3452 | Hmu2495 | Hut0663 |
1410 | hla1654 | 2282 | 1028 | 1167 | 988 | 1122 | 1113 | 1077 | 1202 | 1154 |
1364 | VNG1842 | 1028 | 3365 | 1234 | 966 | 1030 | 1016 | 1036 | 1189 | 1120 |
1391 | NP2484A | 1167 | 1234 | 2182 | 1028 | 1039 | 1104 | 1112 | 1218 | 1125 |
1299 | HQ3027A | 988 | 966 | 1028 | 2260 | 1052 | 1234 | 1056 | 1013 | 986 |
1492 | HVO_2640 | 1122 | 1030 | 1039 | 1052 | 2315 | 1381 | 1127 | 1212 | 1161 |
1486 | Hbo2202 | 1113 | 1016 | 1104 | 1234 | 1381 | 2228 | 1139 | 1175 | 1178 |
1554 | rrnAC3452 | 1077 | 1036 | 1112 | 1056 | 1127 | 1139 | 2373 | 1467 | 1345 |
1684 | Hmu2495 | 1202 | 1189 | 1218 | 1013 | 1212 | 1175 | 1467 | 2252 | 1385 |
1560 | Hut0663 | 1154 | 1120 | 1125 | 986 | 1161 | 1178 | 1345 | 1385 | 2253 |
457 symbols consensus ------------------------------------------------------------ #oth 111111111111111111111111111111111111111111111111111111111111 hla1654 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: VNG1842 MHLSVSVTNIHMHVRGVLKRLLPRTVVRRTRGHRPGRHQPVAPPAGQRTAVHHRGRRLPD NP2484A :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: HQ3027A :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: HVO_2640 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: Hbo2202 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: rrnAC3452 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: Hmu2495 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: Hut0663 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: consensus ------------------------------------------------------------ #oth 111111111111111111111111111111111111111111111111111111111111 hla1654 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: VNG1842 RPPARDETRGRPPRGRRPGGRPTADACSACRSPRRPERRQPADALGGPARETRPRRPPAR NP2484A :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: HQ3027A :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: HVO_2640 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: Hbo2202 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: rrnAC3452 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: Hmu2495 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: Hut0663 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: consensus --------------------MLDELLGRAELKARIEELEEEKRHLERQLDAEEERRADAV #oth 12212222222222222221.11211..24.121131.131323.331121.42..2212 hla1654 :::::::::::::::::::::I:R:::::G::E::::::::::::::RAE:::Q::S::: VNG1842 HRRRLTRGATPILAAPRDHS:::D::::T::::::DD::A:ADS:QQ:::::AD::SE:A NP2484A :::::::::::::::::::::::DI:::T:::EQ:A:::D:RDR:AA::E::S::::::: HQ3027A :::::::::::::::::::::::::::::::::Q:VD:KQ::H::::::A::::::T::: HVO_2640 :::::::::::::::::::::::::::::::::::A:::D:RDA:AGR:EG:S::::E:A Hbo2202 :::::::::::::::::::::::::::::K::::::::::::H::::RAE:::::::A:: rrnAC3452 :MQRRFGKSLLSPSPSAIQS:::R:::::S::E:VA::::ANH:::::::::K::::::A Hmu2495 ::::::::::::::::::::::E::F::RS::G::::::::::::Q::::::QD:::::: Hut0663 :::::::::::::::::::::::::::::R:RE::::::D:N:::T::::::SD::::VE consensus RERQAAEARVNRLEDRIEELEDRVERLSGD--EAE-LEFRRTEDLRGARLDEVLDRLESV #oth 431.3.1212.2.221133.1211313435112541542.44321525.1552.313212 hla1654 AD::R::E:::E::H:::S::E:LD:TE:A:::ES:V::::VS::HDP::ADA:G:FRA: VNG1842 :K:::::R:A:E::TK::::Q::LD:TDSG::D:A:P:::DRIA:T:R:R:R::AL:::L NP2484A S:K:::QE:I:::::::AD::GKLQQ-ESE::S:::IG:::K:T:H:K:R:A::S:V::F HQ3027A ::::E::RE::Q:Q::::G::E::::::ESQT:RDE:SV:T:Q:I::::RKNI:::IR:: HVO_2640 :A::E:::E::::::::T::::::::::::::DDS::D::G::::::D::R:::S::D:L Hbo2202 KD::E:::E::::::::T::::::S::G::::DEAE:DY:G::::F:E:R::I:S::::F rrnAC3452 T:::R:::E:::::::VA::Q::::::QDE:::G::ST::AE:T:SR:::S::::::::: Hmu2495 SD::D::E::::::::VT::::::Q:QQ:K::SGR:G::::E:T:S:E:::D:::::D:: Hut0663 T::::::R:A:::D::VQ:::::::::::S:::Q:::SV::R:T:C:D::TTI::::::: consensus ETG-PEGALTAYVADD--LPDAVRDAFGDRAPLVRRAAPCLVVTDDAGLVSVALSPPAPP #oth 22311..211.4.523343.443333212123..312..12344.12142222144155. hla1654 :SDD:::L:::F:P::DAV:SS:AEW::::TR:::::::AV:IA::T:A::A::T::IE: VNG1842 DA:::::V::::::::::P:AQL:::L:::::::A::::::::H:RD:I::T::R::N:: NP2484A :AK::::V:::::D::::V::ELAEQL:::T:::::::::::CV::::VLAT::R::VA: HQ3027A :::::::::::M:TET::V:NEI:RLLDE:SA::Q:L:::::CI::::MIA::IELT::: HVO_2640 S:D:E::::::A:S::RS::S:AES:::G:::::::::::VAL:::::V::::::::RQ: Hbo2202 S:::::::FS:V:G::::I::E:A::::::SA:::::::::CL:::::::::::DA:TL: rrnAC3452 ::E::::VF::::DAERS::GP:::::::::S::AS:::::A:::::::L:AC::V:::: Hmu2495 :::::::::::::::EHD::A:::::V::D:::::::::::L:V::::::GTT::T:VS: Hut0663 ::D::::::S:F:G:A:P:::::S::::::SS::S:V:::FAF::::R:L::::D::IE: consensus EPFVEWADGFRLERSWFEPTGRHAVALVRSDLFALGVYEGRERTAFHGFTSDVKSAHSKG #oth 42.43.533353134125.223432.1..2.2..2.2.314334524312121243.... hla1654 A::DR:S:R:::DE:::R::::F:F::::::T::::::::D::V::E:::::::E::::: VNG1842 :::C::GQTA:I::D:LA::::Y:L:V::A::::V:::RDGD:RS:D::::N:::D:::: NP2484A :::::::GRPTV:::::V::::::L:V::::I::V:::::D::VDIRTV::N:::D:::: HQ3027A T:::::GTT::I:PQ:VA:AEPVT::V::::I::::::D:STL:HVTDV:T::MD::::: HVO_2640 DD:DR:S:::D:DPV::H::ETT::::::G::::::R::DGDLEFVE::E:::::::::: Hbo2202 :E:AT:N:E::::::::T:EEPVR::::::::::V:::D:ESV:LVDEVE:::MN::::: rrnAC3452 S::TG:::TVQ:::::::::DE:V::::::::::M:E:D:::Q::::::D:EL::Q:::: Hmu2495 :::A::R:::AIDHT::::::EY:::::::::::::E::::D:::::::D:EL::Q:::: Hut0663 D:::T:D::AVFD::H:::::EFTL:::::::::M:E:H::::I:::::D::LGRN:::: consensus GFSQARFERLRDEQIDSHLDRCHAAL----------EERDA----D--RLYVVGERTVLG #oth ....2....2.13.125.223164.12221211132524331111211333.1.242113 hla1654 ::::G::::R:EG:::E::KKAT:::::::::::::ADL::NAPI::::TI:::::S::: VNG1842 :::::::::::::::QA::EE:QR::::::::::::ADI:::::::::::F:::QD:L:D NP2484A ::::S::::I:::::QK:IKKAS:::::::::::::DDI::::::E:::R::::D:RLI: HQ3027A :::::::::R::Q::ED::EHA:E:IETHLT:::ENSQIQT::::S::EVV:L::K:::: HVO_2640 ::::G::::I:EG:::D:I::::E::DEFLGGGSGAG::AG:::::DAD:V:L::::::: Hbo2202 :::::::::R::::VEN::::AKD::::::::::AAN:NA::::::::G:V:L::::::: rrnAC3452 ::::S:::::::Q:::::::::R::I::::::::::::VSP::::::::::::::GS:IH Hmu2495 ::::::::::::A:::::V:::L::I:::::::::::::::::::E::::::::::SL:P Hut0663 :::::::::::::::::::E::LV:::::::::::::::ST::::::::::::::Q:::D consensus EFRDRADATATVDATGDPEAALDDAVREFWTTRLRAL #oth 3143513434311.1.2.45..42.3421.3322362 hla1654 :V:EH::I:DVS::::K:RN:::::FHD::M::I::I VNG1842 A:D--:::::A:::::::AD::A::HTD:::LP:SL: NP2484A ::D--:::::A:N:::K:KP::E:::::::SV::YG: HQ3027A A:S:L:GRRE::::::E:KS::E:::D::::I:VST: HVO_2640 ::::::AL::::::S::::T::TE:S::::::::YR: Hbo2202 D::AM::HV:::::S::::D::RA::::::::::YC: rrnAC3452 ::E:LST:MKP:::::E:D::::::::SL::V:::VP Hmu2495 K:A::::::QP:::::E:::::A:::H:::RV:::V: Hut0663 A:EEA::::::::::::::P:::::FYD::::T:W:I