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9 genomes BUD0359 9 proteins
a Hsa
Halobacterium
sp. NRC-1		 b Hma
Haloarcula
marismortui		 f Hvo
Haloferax
volcanii		 g Hbo
Halogeometricum
borinquense		 h Hmu
Halomicrobium
mukohataei		 i Hut
Halorhabdus
utahensis		 j Hla
Halorubrum
lacusprofundi		 q Nph
Natronomonas
pharaonis		 x Hwa
Haloquadratum
walsbyi

VNG2148

rrnAC3150

HVO_0307

Hbo1174

Hmu2601

Hut2128

hla0161

NP5030A

HQ3253A

Pairwise sequence scores
Consensus score2928 Hut2128 VNG2148 rrnAC3150 Hmu2601 NP5030A hla0161 HVO_0307 Hbo1174 HQ3253A
920Hut2128 2934 378 621 581 540 397 529 345 327
986VNG2148 378 3069 546 612 566 420 521 403 448
1245rrnAC3150 621 546 3043 1068 646 515 656 548 533
1299Hmu2601 581 612 1068 3071 723 545 659 510 504
1195NP5030A 540 566 646 723 3123 385 610 488 489
1320hla0161 397 420 515 545 385 5421 826 740 730
1571HVO_0307 529 521 656 659 610 826 3397 1216 1129
1397Hbo1174 345 403 548 510 488 740 1216 3264 1290
1419HQ3253A 327 448 533 504 489 730 1129 1290 3200 

805 symbols
consensus       ------------------------------------------------------------
#oth            111111111111111111111111111111111111111111111111111111111111
Hut2128         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
VNG2148         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
rrnAC3150       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
Hmu2601         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP5030A         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
hla0161         MMTSPSESCATAVLGVPVTEYPSGVATSSVCLSSSERSHVPPSDVVSASPNTRFSPSSSR
HVO_0307        ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
Hbo1174         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
HQ3253A         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::

consensus       ------------------------------------------------------------
#oth            111111111111111111111111111111111111111111111111111111111111
Hut2128         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
VNG2148         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
rrnAC3150       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
Hmu2601         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP5030A         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
hla0161         NSVQTNVSRSSPTAAVSALATSNDEGSSWVTTSRSTFSIRIVRSRFWLAWRANPSNSVAS
HVO_0307        ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
Hbo1174         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
HQ3253A         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::

consensus       ------------------------------------------------------------
#oth            111111111111111111111111111111111111111111111111111111111111
Hut2128         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
VNG2148         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
rrnAC3150       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
Hmu2601         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP5030A         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
hla0161         GPTSPSRNLSPTESNAARSRSSLSAYLTETVHWASPSEVGSIRIRVAVFGSNGSSICSTI
HVO_0307        ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
Hbo1174         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
HQ3253A         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::

consensus       ------------------------------------------------------------
#oth            111111111111111111111111111111111111111111111111111111111111
Hut2128         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
VNG2148         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
rrnAC3150       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
Hmu2601         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP5030A         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
hla0161         DGLTVDGLITDGVAADGSASREGEDEGEGAPPATGATPLATSATATNPTRRARDGAFRIQ
HVO_0307        ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
Hbo1174         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
HQ3253A         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::

consensus       ---------------------------------------------------MRALPILLA
#oth            111111111111111111111111111111111111111111111111223454646642
Hut2128         ::::::::::::::::::::::::::::::::::::::::::::::::MRRPPSIVT::S
VNG2148         ::::::::::::::::::::::::::::::::::::::::::::::::::::SRA:LAV:
rrnAC3150       :::::::::::::::::::::::::::::::::::::::::::::::::::::P::AVGV
Hmu2601         ::::::::::::::::::::::::::::::::::::::::::::::::::MRP:TVSI::
NP5030A         ::::::::::::::::::::::::::::::::::::::::::::::::::MNG:RAV:C:
hla0161         ITALRRRAKRFPSFVLTVRRASSVIDQDAVVDGSRRFIEVAFLYRDANQGG::::::S:S
HVO_0307        ::::::::::::::::::::::::::::::::::::::::::::::::::::K:::LVVV
Hbo1174         :::::::::::::::::::::::::::::::::::::::::::::::::::------MF:
HQ3253A         ::::::::::::::::::::::::::::::::::::::::::::::::::::::VS:F::

consensus       VLLVVASVAGAV---------------GPAS-AGD--------APASDG-ASDQL-----
#oth            523333335123421222111111111344464442222333361564425453522222
Hut2128         T::::VAIF::GS::::::::::::::AL:AT:::::::::::D:GTPH:-----:::::
VNG2148         A:V:::TAMA:T::::::::::::::::L:-:---::::::::::GPPT:::Q:S:::::
rrnAC3150       I::M:V:::AP:T:::::::::::::::F:-:---::::::::P::QTAGG:::::::::
Hmu2601         L:F::L:LPAV:A::::::::::::::::--:---::::::::V::EQ::TAA:F:::::
NP5030A         L:IC::TLG:V:IAADSP:::::::::DG::A:EPTVSATDAPL:QT:::E::R::::::
hla0161         :::LL::I::::SPAAVAGAVADPVGE:TE:V::NTEPAAASV::TVEN::A:A:DGADG
HVO_0307        M:::ASP:L::::::::::::::::::::TDGSSR::::::::S::L::::THAQ:::::
Hbo1174         :V::LSA::::AIP::::::::::::::T::LPD:AVSPDVTIN:V::AYSVQ:STERPS
HQ3253A         :I::I:T::::::::::::::::::::-:VTSI:::::::::::QL::::STS:V:::::

consensus       ----PAVTPENDTARVLDIPPGDVDRSTLETRTVDLGSALAFAATRLRSAIRTEAFENRI
#oth            2333343444453555.5424364533574367332253154547636455424455732
Hut2128         ::::-:::T::::VGR:TV:D:A---A:G:SA:A::S:::SGQQE::Q:TLQ:GQ:RSAF
VNG2148         :::::::G:SP::T:::RLTSA:A--AAFG:PALSVTGT::AG::GIST:Y:L:RLDTAL
rrnAC3150       :::::Q:::VDN:TNH:A::AS::RST:YNRSSI:V:V:V:AGSSD:::DYA:TT::RQF
Hmu2601         DDPS:VIV:IQEF:NY:T::::N:TV:DHGAVN:NT:T:V:TD:AS::GQH::T::::EF
NP5030A         ::::LSIVS:G:::EY::P:::TI:::GQ::VI::VS::VGTNSDTI::EF:Q:SLVAAF
hla0161         DPDR:Q:DA::L:F:T:ST:I:VAT:VESGS:GAN:::SVG::VGETDA:ME:A:VVQ::
HVO_0307        ::::-VES:S:E:IH:::::SSELV:::V:AHH::::PS:D:S:L:AGGR:Q:G:SLE::
Hbo1174         GASVNNQ:AR:ASI:::G::SAQ::::S:V::::E::P::TLDDNETKMQ:K:L:AID::
HQ3253A         ::::-NQGGSGPILSM:G:S:VE:Q:AA:Q:TY:E::RG:E::S:ATETR:Q::TTL:::

consensus       ESASTDSERQQRILAELTRIEQRADALRSRQRTAIQAYAAGNITTRELLRRLARIDAEAR
#oth            55253444144333523354263444.542345334423525234331254324135313
Hut2128         :::RNE:AKSAV:D:T:D:L:A::MT::DQRQ::::SFTRDEM:SS::F:E::::RIASE
VNG2148         SV:N::A::RA::RT::DWATN:TT::VQ:E:D:RD:::::T:::T:F:TVVGSVH:A:T
rrnAC3150       FQQDSETA:DRLVDET::D::SQRTS:EQ:NEA:::Q::N:V::AT:F::Q::L::::S:
Hmu2601         YDT:ST:::SEI:RS:VSWA:T:S:E::V:RAG::E:::S:T:S:TKFV:TM:L::T:::
NP5030A         :E:T::A::NDIAADAA::LDE:::::IAAE::::AE:ND:A:GE::F:S:I:A::RA:D
hla0161         :A:E:SV:::R::::AIN:V:RDEVT:N:::TE:FS:H::::LSD::::DE:V::A:T::
HVO_0307        ::::D::T:::L::D::NG:::::I::Q:A::SV:ERFNDD:L:A::::IE:::::::::
Hbo1174         K:TESPDR:::L::Q:::T:::A:IS::A::E:TL:::GE:K:DS:T::I:::I::MH::
HQ3253A         Q::::P:M::::L:QA:SET:::TVV:::Q:::Q:S::GSE::::EQ::A:::A::S:S:

consensus       AIATRLDRLRDVAERSSDFSLSS----RLAALRGELQTLQGPVRERAAAVLTGDAEATRV
#oth            34553545344647465442335734424354554152331.1352453454.5334632
Hut2128         E:NQQVAV:ET:VQE::VV:::DDATAT:::ID::VI:::::ITA:LT:S:R:I:PPRSI
VNG2148         R:EGF:GGPD:NRALYTLADSY:NLTT:ISQVNTR:::V:::::::L:::VD::RD:V::
rrnAC3150       QL::Q:::I:AT:GTAP:Y:::PAQRF::ENN::V:K:YR::ISQ:IS:ETA:ET:PNA:
Hmu2601         Q:SATIG:VK:::R:::-Y::PRRLDT:IEN::::VEV:R:::AR::SEAV:::RRIES:
NP5030A         RT::TA:W:::D::T----H::DEAQQQV:TDAAQ:LR::::::::T::A:G::-:PV::
hla0161         EYDE:::E:DAL::ETDG::SPT::::::DE:QVA::VYG::::DY:LSTAR:ATP::D:
HVO_0307        :LNE:RVA::::TS:T::::I::G::::::::ER::D:FT::::TH:V::M::E:D:A:F
Hbo1174         :FED:S::IQEISKSV::::VD::::::T:SVER::D:FT::::QHVGD::::K::S::F
HQ3253A         :LI:::S::KSA:DSIEG::IPAS::::FET:QI:::::TS::::H:TD:I::TT:RS:F

consensus       YVESSEEGVVLATVDDGTYVREAYRGDERDRDAGDQFNDEA-LAL-------TQAAYPWI
#oth            61532452321332521413..2334563566556656354234523222425743..34
Hut2128         G:I:::S:A::TAI:G::FL:::TLWS::LDSGAN::EQGD:T:PLSRAYQQV:G::::A
VNG2148         H:TVGD-::M:::R:GD:::::TVVPGNL:AATTADYG:P-:I:F:::::::IG:T:::T
rrnAC3150       :::A:L::YM:S::S::Q:T::T:L:QD:EQT:V:::AQTN:DS::GAVNTRAENL:::L
Hmu2601         :::::DS:YT::M::GDS:Y::T:LA:::RPE:T:::RESD::Y:VNAANRRGIEL:::V
NP5030A         N:DTR::A:::::::::::::::VDPTAQTVHIE:RYD:DTV::::::::SRF:EL:::V
hla0161         :::::NRSI:::::V::E::::VF:V:RW::GG:SIG:::::INA::::::::S::::ET
HVO_0307        S:RT::T::::SV:A::E:::::::A:L::::QRTVTYE::::DI:::::::VAEN::T:
Hbo1174         F:QTGP:SI::S:IRRDI::::V::::I:R:GS:ITSDI::::NA::::::::V::::N:
HQ3253A         VIQ:GPQS::IG:II:D:::::::::RL:GG:I:VEL:ITTPTNV::::::::TD:::T:

consensus       TSLRRPQ-----NQAFGAGGIYRV--RIDHDRGRLTAYLDGGTARVFKEHQRRPLASIPT
#oth            64645662431146563546343211526146.4.6313132144114151335183535
Hut2128         VENLVSG:LS::VTG::ESTV:A:::ELT:SH:D:QT::::R:TN::Y:V:QLQ:S:L::
VNG2148         KNHS:--:::::GVSYSLL:Q:A:LFSAS::H:E:SL:Y:PS:TH::V:R:T:R:PQT:A
rrnAC3150       Y:EQY:S:::::V:TY:RSA::QI::QA::PN::::::::::::N::Y:T:TLD:TTVDR
Hmu2601         :NDTS:S:::::G::L:ET::::F:::AEYTS:D:::::::::TN::R::::QS::A::V
NP5030A         DDA:SGTSISLF:SDHPPTR::QF::E:P:TQ:E:M::::::S:DIIH:TH:LDPE:M:A
hla0161         A:::E:D:::::--:::::SVQ:I::T:P::F:L:RTFVS:::EQ::V::::IA:GAF:D
HVO_0307        Y:S:TA::NG::TNVIS::DSH::::::NYNY:Q::::V:T:SG:::::S:T:::R::S:
Hbo1174         SA:QYR:NGT:::IVGTDDNSFL:::::R::::::F:FV:S:SQ::::AF:Y:::DTMEP
HQ3253A         :::::ER:::::TVTASD:S:A::::N::::::::VSFI:TSS::I:::V:Y:::MQTS:

consensus       TETASAVDDGLRLTVNRTYAGGPVRVTVNDTETGEPVDATVTV------NSTAVGTTGSD
#oth            4735445522351424423522.3623143451154143534323243333573151342
Hut2128         GTV:ANTT::VL:E::A:AV:-:SA:::RNAT::KR:I:EI::::::::ETATRNRSTIG
VNG2148         SY:TVNAT:TTT:S:SEP::::::N:R:-E:AS:T:::T:IS::::::::G:V:::::DS
rrnAC3150       S:V:TN:NQSV:VR:QQSFES::LL:::I:NS::STD::::KI:::::::GKRI::::T:
Hmu2601         :D:VTEQ::S:::RI::::ET::MH:RLV:SV:::::SG::RI::::::DGEY:::::A:
NP5030A         :-:YE:S:N::A:Q::A:RG:::LGIE:V:AD::DD:P:::R::::::::ESEI:-:AD:
hla0161         ::PV:VNG::FNV::D:S::::::T:::RNE::::::SDVTVTKSVGDGD:Q:I:::DA:
HVO_0307        :A::TG:R:::A:::D:::P:::L:IQL:ES:::D::::N::IGLEASQE::LL:H::::
Hbo1174         ES:Q:::K:::K::AHQ::S:A:::F:L:::::::::N:LI::GL:RGER:::::K::::
HQ3253A         RRSI:::K::::::AHP::P:::::FQL:S:A:EQS:::PL:LGP:PSGE::I::E::::

consensus       GALWTVSPRGAYTVTAIDGDGAVVL-TVDP---P--------------------------
#oth            162122214452321145543524546364562154533524243432221221111111
Hut2128         SR::LLETDETR:I::RRP::TT:AV::GS:::-::::::::::::::::::::::::::
VNG2148         :DR:F:::A:E:::A:TV:GDR:TTTVTADPHP:APGGNTTTTLPR::::::::::::::
rrnAC3150       ::::::E:::E::::::TQ::DR:RVP:SGSV:-::::::::::::::::::::::::::
Hmu2601         ::::::E::PGVPL:VRTD::T:FDARLP::::-::::::::::::::::::::::::::
NP5030A         :Q:::::::::V::::SH:GDS:S::ETEL:::-::::::::::::::::::::::::::
hla0161         :MVR:L::AES:R::VV:EPR::FVDNLQ:IAT:RPVDDE::::::::::::::::::::
HVO_0307        :T::::::SAP::::V:K:NS::::::A::TPT:TLAANPTDTENDTSPTVTSTPTESIE
Hbo1174         :S:::MA:GQ::Q::::K:NSV:L::::E:GNP:FVNGNQTQTGNASAVPVPA:::::::
HQ3253A         :S:::LA:D:T:Q:::::RSSV:LV:S:::SFP:LIYGIVGNSTRENS::::::::::::

consensus       -------------------------
#oth            1111111222122122222222122
Hut2128         :::::::::::::::::::::::::
VNG2148         :::::::::::::::::::::::::
rrnAC3150       :::::::::::::::::::::::::
Hmu2601         :::::::::::::::::::::::::
NP5030A         :::::::::::::::::::::::::
hla0161         :::::::::::::::::::::::::
HVO_0307        SPGPSRTVPQGAPGDSPTVGSPTVG
Hbo1174         :::::::::::::::::::::::::
HQ3253A         :::::::TQTGVNGSNNDIRVSTND