|
Pairwise sequence scores | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
Consensus score | 1904 | VNG2263 | hla0113 | NP1238A | Hut2497 | rrnAC2854 | Hmu2848 | HQ3685A | HVO_0180 | Hbo1309 |
1285 | VNG2263 | 1953 | 1090 | 1146 | 1143 | 1148 | 1126 | 1129 | 1142 | 1182 |
1391 | hla0113 | 1090 | 2143 | 1272 | 1228 | 1240 | 1308 | 1187 | 1227 | 1309 |
1436 | NP1238A | 1146 | 1272 | 1886 | 1295 | 1319 | 1306 | 1203 | 1312 | 1284 |
1559 | Hut2497 | 1143 | 1228 | 1295 | 1901 | 1469 | 1498 | 1273 | 1275 | 1286 |
1554 | rrnAC2854 | 1148 | 1240 | 1319 | 1469 | 1987 | 1567 | 1273 | 1289 | 1291 |
1601 | Hmu2848 | 1126 | 1308 | 1306 | 1498 | 1567 | 1962 | 1304 | 1356 | 1373 |
1438 | HQ3685A | 1129 | 1187 | 1203 | 1273 | 1273 | 1304 | 1914 | 1304 | 1495 |
1528 | HVO_0180 | 1142 | 1227 | 1312 | 1275 | 1289 | 1356 | 1304 | 1952 | 1502 |
1528 | Hbo1309 | 1182 | 1309 | 1284 | 1286 | 1291 | 1373 | 1495 | 1502 | 1928 |
293 symbols consensus -----------------MSGKDDYYNRAKQEGYRARSAYKLQQLDETAGLLGPGRTVVDL #oth 111111111111111122411.3...11..1...2.1.1..2.1.34221235231.2.. VNG2263 ::::::::::::::::MGNR::H:::KS::::::S:A::::::::DRFDV:FG:AS:::: hla0113 VNRRTTPINGRTIYDGA:::::E:::KS::Q::::::::::K:I::E:N:FER:D::::: NP1238A ::::::::::::::::::TR::::::::::Q:::S:A::::K::::A:D:INE:D::::: Hut2497 ::::::::::::::::::::::K:::::::Q:::::::F::R::::::D:::AE:::::: rrnAC2854 :::::::::::::::::::::::::::::::::::::::::::::D::::::E::::::: Hmu2848 ::::::::::::::::::::::::::::::::::::::::::::::::::::QN:::L:: HQ3685A ::::::::::::::::::T:R:E:::::::::::T::::::::I:AD::VF:::N::I:: HVO_0180 ::::::::::::::::::AR::H:::K::::::::::::::K:::GD:::F:::N::::: Hbo1309 :::::::::::::::::-M:R:H:::K:::::::T::::::K::::ET::F:::N::::: consensus GAAPGGWLQVAAERVGDRGTVVGVDLQRIDDLEDDD--VETIRGDMTEESTKEELRDAVG #oth .......1..12.33144.311...2.2.2321635231211...1.113.245213421 VNG2263 ::::::::::::::A:A::K:::::F:S:TQF:T:A:GL::V::::::DE:RQRV:::AN hla0113 :::::::::::::E::ES::::::::::::::D:H::::::::::::::R:RHY::E:I: NP1238A :::::::::::N:LA:EA::::::::::::PI:G--:::::V::::::DA:R:KV:AL:: Hut2497 ::::::::::::::L::G:R:::::R:::::::EP:VP:::::::I:D:::V:AIT:::: rrnAC2854 :::::::M::::::I:E:::L::::R:T::::::PEPT::YV::::::D:::D:I:EI:: Hmu2848 :::::::M::::::::TG:V:I:::R::::::D:P:PT:::::::::D::::::V::V:: HQ3685A :::::::::::::A::PS:::I:::F:::R:::S:I:::D:::::::D::::NA::KR:N HVO_0180 ::::::::::VS:E:::H:K:::::::::RGIDR:N:::Q::::::::DE:::::TAVI: Hbo1309 :::::::::::::E:S:H:::::::::::R:IDA:N:::::::::::D:E:::S::ERI: consensus ES-----GADVVISDMAPNMTGEYDLDHARSVHLARQAFEVALDLLAAGGDFVVKVFDGR #oth 33112223212.2..1..11..1.21.....11.1.1.1311412.321.1131...2.3 VNG2263 G::::::-::::V:::::D:::::::::::::::::::L:T:RE::D:::H::::::::: hla0113 :R::::::::::::::::::::::A::::::::::::::D::EE:::P:::::::::Q:E NP1238A :A:::::--:::::::::::::::S:::::::::::M:::T::::::PN::L:A:::E:P Hut2497 :A:::::--NL:L::::::V:::::::::::::::::::::S::V:G::::L:::::::: rrnAC2854 ::DGSGGPV:::::::::::::Q:::::::::::V:::::::T:::D:::::CA:::::Q Hmu2848 AE:GDERPV::::::L::::::Q::::::::I:::::::A::E:V::T::::A::::::Q HQ3685A N::::::SVN::L:::::::::::SV:::::::::::::S::T:I:P:::::I::::::: HVO_0180 :R::::::::A:V:::::::::::S:::::::Y:::::::::QE:::T::::A::::::P Hbo1309 :E::::::::::::::::::::::S::::::I::::::::::::::P:::::A::::::Q consensus DLADLRADIEREFEYVRSVRPDASRDSSSELYLVAKHRLTAPVREGDELEVEIVDVGSEG #oth .321143.226..2112332.1....2...212.1.23211.123..332121224.2.. VNG2263 :FQ::L::::D::AF:ATHS::::::A:::::V:G:NHIV::IA::::HT:::::T:D:: hla0113 ::DAF:E:VRA::::L:T:S:P::::::::V:::::GLN::::AA::RI::TVEER:D:: NP1238A :TD::::::D:::::::TIH:::::::::::FM:::G::::::::::T:::::DNL:D:: Hut2497 ::D::KT:::E::::::E:::::::::::::::::::::::::::::TV::::::T:E:: rrnAC2854 ::D::I::::P::::::E::::::::::::::::::::::G::::::IV:AT:E:I:E:: Hmu2848 :::::E::::S::::::Q::::::::::::::::::GF:::::::::TV::T:E:::::: HQ3685A ::::F:Q:VDT:::::K:I:::::::::::Q:::G:::I::::SP::::DATV::I:::: HVO_0180 :V::::::M::::Q::::M:::::::::::Q:::G::F::::::K::::D:::::::::: Hbo1309 ::::F:::V:E::Q::::I:::::::E:::Q:::G:::I::::AA::::D:V:D:::::: consensus DGIAKVEGYTLFVSGAEAGDTVTVRVTDVKPRFGFAEPVD------------- #oth ..112112112..32226.1414.212.3.1221..23324321111111111 VNG2263 ::::RI:::::::DD:AE::::D:T:::L::NY::::RR:GA::::::::::: hla0113 ::::Y::::SI:::D:DV:E::::E:V:A:::::::TR::VGTPDSDESDEGE NP1238A ::V:::D::::::::::P::APE::::::::::::::TLE::::::::::::: Hut2497 ::::::::F::::A:V:E:E::::::D:L::QY:::Q::E::::::::::::: rrnAC2854 :::::::NF:V::::V:D:E::E::ID:::::YA:::::E::::::::::::: Hmu2848 :::::::::::::::T::::::::::D::::N::::Q::Q::::::::::::: HQ3685A :::I:ID::::::P:V:N::S:R:::::L:SNV::::VIE::::::::::::: HVO_0180 :::::::EF::::::T::::MP:::::::::::A::::I:DED:::::::::: Hbo1309 ::::::D:::::::ET:T::E:H:::::I::N:::::VI:H::::::::::::