|
Pairwise sequence scores | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
Consensus score | 4088 | NP2262A | VNG2021 | HQ1094A | hla1076 | HVO_1871 | Hbo1748 | Hut1922 | rrnAC3100 | Hmu2622 |
2766 | NP2262A | 4665 | 2161 | 2231 | 2365 | 2315 | 2306 | 2589 | 2645 | 2620 |
2848 | VNG2021 | 2161 | 3875 | 2584 | 2588 | 2590 | 2641 | 2053 | 2153 | 2149 |
2974 | HQ1094A | 2231 | 2584 | 4119 | 2662 | 2692 | 2929 | 2140 | 2083 | 2190 |
3117 | hla1076 | 2365 | 2588 | 2662 | 4077 | 2889 | 2898 | 2166 | 2141 | 2235 |
3118 | HVO_1871 | 2315 | 2590 | 2692 | 2889 | 3940 | 3168 | 2107 | 2252 | 2271 |
3271 | Hbo1748 | 2306 | 2641 | 2929 | 2898 | 3168 | 3986 | 2235 | 2287 | 2348 |
2719 | Hut1922 | 2589 | 2053 | 2140 | 2166 | 2107 | 2235 | 5456 | 2948 | 2959 |
2767 | rrnAC3100 | 2645 | 2153 | 2083 | 2141 | 2252 | 2287 | 2948 | 5209 | 3434 |
2781 | Hmu2622 | 2620 | 2149 | 2190 | 2235 | 2271 | 2348 | 2959 | 3434 | 5231 |
715 symbols consensus --MREAPPTDEGWFALHDFRTVDWDAWRDAPERERDRALEEGVAYLRAHEAVADADEGAS #oth 143442.3.2...12...2121......2..313.51.2421542.5542322.122.61 NP2262A MPQ:QP:G:E:::YI:::::SI:::::::::D:::E::::T:TD::Q::VDLK::E:::: VNG2021 :::AD:::::::::V:::CY:::::::::::::D:TA::DDAASF:ADR::L::::::E: HQ1094A :::S:V::::::::V:::::::::::::E::THR:EA:VGD::E:::K::SI:::E::S: hla1076 :::V:::Q:E::::::::::SI:::::::::::::K::I:::K:F:KHR:L:::::::D: HVO_1871 :::V:::Q:::::::::::::::::::::::D:::R::I:::::::D:::::E::EA::: Hbo1748 :::TD:::::::::::::::::::::::::::H::N::VG:::E:::T::::E::ED:T: Hut1922 MVR:R::::L:::Y:::::::I::::::E::Q:V::::ID::RSH:QKAT::::::D:G: rrnAC3100 MDQ:KP:A:E:::Y::::C:SI::::::E::Q:V:::::S::IGF:D:Y:::E:::::QT Hmu2622 :MK::P:Q:E:::YV:::L:H:::::::A::::D:::::TD:ID::EYF:::E:SS::Q: consensus AVFSVLGHKADLLIVHFRPTLDDLDRAERQFEQTAFAAFTEQATSYVSVTEVSGYT--SR #oth 111222.21..2223.1.1123311321.3..3.21.41.1144.1...2.2...32144 NP2262A ::::I::::::FMVL:L:::::H::H:::R::S::L:E::::SS:::::::::::M::HE VNG2021 G:::IT:Q:::::F::::ES::E:::IQ:A:::::::EY::R:H:::::V:I::::::AP HQ1094A :::::::::::I::T:::::::A:S:::::::::T::G::T:P::::::A:I::::::TP hla1076 GL:::::::::::F::::::::::SSI::R::D::L:N:::RT::::::::::::V:::D HVO_1871 :::::::::::FVV:::::::::IS:::::::R::L::::::P::::::::::::V:::D Hbo1748 ::::I::::::::VI:::::::A:S:::::::R::L::Y::::::::::::::::V:::Q Hut1922 ::YAM:::E:::::::L:::TTAI::LQ:R::::E::G:::RTD:F:::::A:::SKKG: rrnAC3100 ::YT:M:::::IM:L:L:::MG:::A:::H::::E:::::::EF:::::::A::::EK:: Hmu2622 ::YT:::D::::M:L:L:::MA:::A::::::::E::RY::::::::::::A::::EKA: consensus EYF-EGED-DDDEGLRRYIEGKLTPEIPDDEYVCFYPMSKRRGPEYNWYDLPFEERAEHM #oth 22211232334.4.132.233124.12.233223....1...3132....11121.1231 NP2262A :LT:D:L:DLE:::M:N:MKQRIY::L::ADH::::::::::::DH:::::::D::R:Y: VNG2021 D::::DP::SV:D:::Q:F:S:::::::::T::S::::::::Q::Q::::::I:::::M: HQ1094A G::::NP::AA:::::Q:MQ::::::::NKD:AG:::::::::ET:::::::ID::::M: hla1076 :F:::DPE:SV:T::K::::::M::::::::::::::::::::E:::::::S::D::DL: HVO_1871 D:::::NEE:I:A::L:::::::K:D::E:T:MS:::::::::E:H:::::S:D::RDL: Hbo1748 D::E::::A:V::::::::::::E:DV:::Q::A:::::::::EK::::::S::::::M: Hut1922 :FI::::V::::S::A::MRSR:E:::::A:H:S::::D:::D::::::::::::::::: rrnAC3100 :::::::V::::S::AQ::QAR:H:DV::E:F::::::::::Q:DQ::::TS:::::A:I Hmu2622 ::::D::V::::S::AQ::QAR:H:D:::E:F::::::::::E:DQ:::::::A:::::I consensus SAHGDTGRQYAGKVKQVIASSVGFDDYEWGVTLFADDPTDIKDIVYEMRFDPSSSKYGEF #oth 45.113.12.12113.2.1111.2.14...1..122.2121.21112....22112112. NP2262A :N:::V:::::D::S:I::G:I::::::::I::::::::::::LL:::::::::::FA:: VNG2021 DV:::L:K::::::S::::::::L::M::::::::::L:::::::::::::EV:A:::A: HQ1094A E::AE::KE::::I:::::::::::::::::::::::::::::::::::::EV:A::::: hla1076 AD::EV:KE::::I:::::::::::SH:::::::GS::::::::::::::::A::R:::: HVO_1871 :T:::::::::::I::::::::::::::::::::G::::::::::::::::EV::::::: Hbo1748 :V::::::E::::I::::::::::::F:::::::SE:::E::N:::D::::DV::::::: Hut1922 D:::EV::E:::::T:M:TGAI:M::W::::::W:::L::V:ELL::::::::::::AD: rrnAC3100 KR:::I::G:GSE:S:M::G:I::::W:::I::WS::MRH::ELLT:::::::T:QFA:: Hmu2622 KR:::I::::G:::E:M::G:I::::H:::I::WS::M:HV::LLTQ::::::T::FAD: consensus GPFYVGRRFPPADLGAYLAGERVPTDEGDG------------------------------ #oth .5.21.1213.21.3142313522354565543332232323232232333323223322 NP2262A ::::I:QQ:E:SE:SSLF:A:PLTSET:H:GA:::::::::::::::::::::::::::: VNG2021 :D:F::::::::::P:FM::::::AP::--:::::::::::::::::::::::::::::: HQ1094A :T::I:Q:::::::::L:E:KAI::V:Q:VD::::::::::::::::::::::::::::: hla1076 :E::I::::::E:::::F:::T:::PA::::::::::::::::::::::::::::::::: HVO_1871 :Q:::::::::S::::F:::DG:::S:FG-:::::::::::::::::::::::::::::: Hbo1748 :Q::I:::::::::::::D::S:::S:HETAH:::::::::::::::::::::::::::: Hut1922 :::W::::ME::::A::M:::TIAG:DEHSAADHSNVPATPEDAADGHGGGEHDAEEHGE rrnAC3100 :::::::K:D:SE:P:V:::Q:::::DASVPETPADVAEHEHAPADAGASHSHAEEPTAS Hmu2622 :R:::::::A:S::P:MMN:Q:::SAGANASGATTDGRAQPTDGDHPGTRETATAGQSG: consensus ------------DTDAHGEGHG----------HA-----------H---------GDSDH #oth 212212121111354523353332332121111211111111111211111111121443 NP2262A :::::::::::::SQTSS:SS:G:::::::::RP:::::::::::S:::::::::T:PS: VNG2021 ::::::::::::GA::::::ERT::::::::::H:::::::::::::::::::::::::: HQ1094A ::::::::::::APT::::A::::::::::::::::::::::::::::::::::::::P: hla1076 ::::::::::::::GDTED:::::::::::::::::::::::::::::::::::::E--- HVO_1871 :::::::::::::ESH::A---::::::::::::::::::::::::::::::::::E--- Hbo1748 ::::::::::::EHG::::A::::::::::::::::::::::::::::::::::::::P: Hut1922 SAHSGGHPGGHPE::ESAD::PSGHETGEDGS:PTGHETGEDGGHP:::::::::::AGE rrnAC3100 GAQTGAHAGG:::::S::GT:PGSASEGD::::P:::::::::::::::::::::SEESS Hmu2622 :::::::::::::AGS::GV:PGSSAEGD::::P::::::::::::DGGDVASRD:EA:E consensus DSDD-GGHHGGGG----------------------------------------------- #oth 545552453443212322122221311222113321233223132231213131321123 NP2262A :EIAAEDLESRL:RFGV:::::::::::::::::::::DLEEYPAAGYALCFESSADAEA VNG2021 HDG:D:EQ:HHST::::::::::::::::::::::::::::::::::::::::::::::: HQ1094A G:GGG::SSH:QS::::::::::::::::::::::::::::::::::::::::::::::: hla1076 ----::HD:A:S:::::::::::::::::::::::::::::::::::::::::::::::: HVO_1871 ----::::::E::::::::::::::::::::::::::::::::::::::::::::::::: Hbo1748 GGS:H::A:::::::::::::::::::::::::::::::::::::::::::::::::::: Hut1922 Q::E:D::P:S::RPSVGDVSYSEVDDLPERLFQLGFRAGEDYEGGEYGLLFYSDADAKE rrnAC3100 :E::S:SSSSS::RPDVS:ADFEEIDDAAQRLGRLGLHEGDAYDAGDYALVFHSSADAED Hmu2622 A:ESGD::PD:::RPDPGDASYEETDDLAQRLATMGLSEGEDYDAGDYGLLFYSESDAEA consensus --------------------------GGRAAVVSIWTAEDAA-T-----GDHPG--E--G #oth 33121321232111112113131115316434436334332232121112.533463553 NP2262A VSDEVDGLRENFDHYDTHVMTTVRAE::ET:AI:L:KN:R::T:ASGFL::L::AA:GV: VNG2021 ::::::::::::::::::::::::::----------------:-:::::::EA-::-::- HQ1094A :::::::::::::::::::::::::P::AS:GG:AHGT::--:-:::::A::SDSRSTTS hla1076 ::::::::::::::::::::::::::::S:HGDHPHGE:ETSGE:::::::::HSG:EG: HVO_1871 ::::::::::::::::::::::::::D:HHHHDDGD------:-:::::::::H::-::- Hbo1748 ::::::::::::::::::::::::::-:H:H-----------:-:::::::S:H::-::- Hut1922 LADEVDGLRDNFDHYDRHVATLVRAS:::S::::V:::::::E:AAGFL::L::IT:RYA rrnAC3100 IVDDVSDLESNFDHYDRHVQTAVRADS:QTY:::::::K:::E:AAGFLK:ID:VD:QL: Hmu2622 LADEVADLRESFDHYDRHVATTVRAQS:::::::::::QE::E:AAGFL::VS:VSDTY: consensus --------------GEDGADDA-------DAEIRGELADANIYAGQPHGEDVYATVLYSE #oth 35111111112221336454544453443253.122.12321...1.2....1.2.1... NP2262A APL:::::::::::--::SG::ATHGTDE:D:::::::::D:::::::::::::L::::: VNG2021 ::::::::::::::--------::::::::DG:::::::ED::::::::::::::::::: HQ1094A ::::::::::::::ADTTQS:TSTNTNTQ:S:::EQ::EYD::::::::::::::::::: hla1076 HG::::::::::::::::D:PS:::::::::D:::::::L:::::K:S:::::::::::: HVO_1871 :::::::::::::::D::DEA:::::::::ED:::Q:E:L:::::K:::::::::::::: Hbo1748 ::::::::::::::::SDE::::::::::SGD:::::E:L:::::::::::::::::::: Hut1922 GVLTADTAEGPAAES:PAQESSEQPAEDSA::::E:::E:GV::::::::::::M:V::: rrnAC3100 GSL::::::GEGVE:SET:::SDAQAAESSQS::ET:ES:GV::::::::::::L:V::: Hmu2622 GRL:::::::::::::GA::EPEPTTANSSE::QQQ:::::V:::::N::::F:L::::: consensus ADADELFEEVEGLRGNFDHYDTHVKTAVY----------EARDRDRAAVVSIWDTASAAE #oth .4412.441123.233.22131.2311..221122222134744425.11.1.12321.2 NP2262A ::P:::RD:LGA:AEH:ER::::I:S:::D:::::::::AEVGG::T::::L::EKD::D VNG2021 :G::D::::::::::::E:::::::::::::::::::::DGHEA::R::::::::::::D HQ1094A :TT::::S::::::::::::G:::::::::::::::::::::N:H:N::::::E:Q:::: hla1076 ::V::::D::::::::::::G:::::::::::::::::::G:VT:::::::::::::::: HVO_1871 ::::::::::::::::::::P::::::::::::::::::::NE:G:V::::::E:::::: Hbo1748 ::S:::::::::::::::::G::::::::::::::::::::KE:G:S::::::::Q:::: Hut1922 :AP:::AGP:G:::DH:ADAEG::R::::EP::EVGEVTAVE::EAT:I::L:EHEHD:: rrnAC3100 :N:ET:D:::TD::SA:ER:::::Q:T::::::::::::GDT:G:V:::A:L:::ED::Q Hmu2622 ::PET:ST::TE:TES:::::::EG::::EAGEPLDAATADA:QP::::::L:E:Q:::D consensus TAAGFLSELPGVVARAG--EESGFGTMGMFYTVKPEHREDFVETFDTVGGLLAEMDGHRE #oth 1.123121..2113.2111.11.........211111321.211.13.123.411...43 NP2262A :::EH::D::DI:::::ED::::::::::::::::DY:::::::::E::::::D::::L: VNG2021 ::::::AD::E::E:::::::::::::::::ET::::TAE:::K::::A:V::D::::FD HQ1094A :::::I::::D::S::::::::::::::::::::S:Y:GE:ND:::::::I:T:::::QQ hla1076 ::::::::::E::::::::::::::::::::::::::Q:::TD:::D::EI:::::::V: HVO_1871 :::::::::::I:E::::::G:::::::::::::S:::G::::K:G::::::E:::::FD Hbo1748 :::::::::::I:S::::::::::::::::::::S::::::::K:::::DV::DT:::Q: Hut1922 S::DA:A:::::L:::::::GD:::::::::Q:::DY::E::D::GA::EK::::::::G rrnAC3100 ::SDY:TD:::::G:H::::GD::::::::::::::YH:::::K::::::::K::::::: Hmu2622 ::S:::TD:::I:G:PD:::GD:::::::::::E:D:::E::::::E::E::D::::::: consensus TDLMVNVEDENDMFIASQWDAQEDAMAFFRSDAFRETVQWGRDVLADRPRHVFLA #oth .4.14.61122....1.1.32221..2..1.12.31..21..21.111....... NP2262A :Q::::ED:::::::::::RDK:A::::::::::::::EY::E:::::::::::: VNG2021 ::::::::NDD::::::::RS:::::::::::D:GD::D:::::::::::::::: HQ1094A ::::I:L::::::::S:::::R::::S:::::E:S:::E::::::SE:::::::: hla1076 ::::M::::::::::::::H:K:::::::G::E:::::::::E:::::::::::: HVO_1871 ::::::::::D::::::::RS:D:::E::::::::D::::::::::::::::::: Hbo1748 ::::::I:::D::::::::N::::::E::::::::D:::::::I::::::::::: Hut1922 :A:L::DD::T::::::N:::R:::::::::ED:::::E:::E::::Q::::::: rrnAC3100 :S:LF:HD::::::::::::S:K:::::::::D:S:::D:::::::::::::::: Hmu2622 :T:LA:RD:V::::::::::SK::::::::::E:A:::::::T::::::::::::