|
Pairwise sequence scores | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
Consensus score | 3712 | HQ1404A | Hut0161 | VNG1576 | Hmu2011 | hla0296 | Hbo0924 | NP5126A | rrnAC1938 | HVO_A0553 |
2527 | HQ1404A | 4422 | 2158 | 2196 | 2214 | 2342 | 2204 | 2362 | 2264 | 2270 |
2668 | Hut0161 | 2158 | 3903 | 2386 | 2441 | 2424 | 2207 | 2352 | 2330 | 2293 |
2893 | VNG1576 | 2196 | 2386 | 3864 | 2368 | 2527 | 2317 | 2450 | 2402 | 2358 |
2845 | Hmu2011 | 2214 | 2441 | 2368 | 3720 | 2509 | 2345 | 2424 | 2416 | 2468 |
2906 | hla0296 | 2342 | 2424 | 2527 | 2509 | 3874 | 2189 | 2421 | 2388 | 2465 |
2735 | Hbo0924 | 2204 | 2207 | 2317 | 2345 | 2189 | 4185 | 2436 | 2358 | 2468 |
2942 | NP5126A | 2362 | 2352 | 2450 | 2424 | 2421 | 2436 | 3786 | 2504 | 2550 |
2825 | rrnAC1938 | 2264 | 2330 | 2402 | 2416 | 2388 | 2358 | 2504 | 3712 | 2518 |
2900 | HVO_A0553 | 2270 | 2293 | 2358 | 2468 | 2465 | 2468 | 2550 | 2518 | 3825 |
644 symbols consensus -------------DTRTILVAGTASHVGKSTVAAGLCRLLADRGVSVAPFKAQNMSNNAR #oth 1112222345456544.2........1....211..1.21224121...........1.. HQ1404A :::::::::MSERS:P::::::::::::::::VT::::RF:NAD:R:::::::::::E:: Hut0161 :::::::::::::MG::V:::::::::::::IV:::::R:::Q::::::::::::::::: VNG1576 ::::::::MTAGE:C:::::::::::::::::::::::::::::L::::::::::::::: Hmu2011 :::::::::::::-MT::::::::::::::::V::::::::::::::::::::::::::: hla0296 :::::::MTDHNL::E::::::::::A::::LV::::::::R:::::::::::::::::: Hbo0924 MTDDGASDSSPPHS::::::::::::::::::::::S:::::::F::::::::::::::: NP5126A :::MPPPRRYAVSRA::V::::::::::::::::::::::S:S::::::::::::::::: rrnAC1938 :::::::::::::MAH:L::::::::::::::::::::Y:::C::::::::::::::::: HVO_A0553 ::::::::::::MT:P:L:::::::::::::::::::::FD:::L::::::::::::::: consensus AVPTA---------------DGD------------------------FGEIGVSQYVQAR #oth 134623123333333332333343433311111111111111111143..1.11.2...1 HQ1404A ::VRPTADTDMKSVTADENDSTAVNSSEQEETNTITAGVLNSELNPTY:::::::S:::Q Hut0161 VGFKPGAVGTVGEGGDSELA:::PD:::::::::::::::::::::AY::::IA:::::: VNG1576 :::V::::::::::::::::::APPAAD::::::::::::::::::PW:::::::::::: Hmu2011 ::::P::::::::::::::::::::::::::::::::::::::::::W:::::::::::: hla0296 VAL:P:::::::::::::::::E::::::::::::::::::::::::W:::::::H:::: Hbo0924 :::I:PAVAGSSAERGGDAG:A:TVTDA::::::::::::::::::A::::::::::::: NP5126A ::AA::::::::::::::::T:S:::::::::::::::::::::::G::::::::::::: rrnAC1938 :T:G-:::::::::::::::---::::::::::::::::::::::::-::V::::::::: HVO_A0553 ::A:::::::::::::::::::::::::::::::::::::::::::G::::::::::::: consensus AAGVAPTTDHNPVLLKPRGDGESQLVIDGRAVGHFAAGDYYEEHWERARDAARAAHARLA #oth ..22422..2.......1.211...122.511.233.341.231.33.151.35115..2 HQ1404A ::::QSV:::::::::::::A::::I:::V::::YT:ESF:A::::Q::S::VT::T::: Hut0161 ::::V::::::::::::::::::::::::E::::::::T::DD::D:::R:::Q:YN::: VNG1576 ::RT:AS:::::::::::::A:::::V:::::::YS::S:::S::AD:::::A::::::: Hmu2011 :::IT::::A:::::::::::::::::::E::::YE:RT::DD:::H::S:::D:YE::R hla0296 ::QIPA:::M:::::::::::::::::N:G::::::::E:::S::DQ:::::V:::R::: Hbo0924 ::R:T::::::::::::::E::::::VN::PA:NH::S:::::G:H::::::E::::::G NP5126A :::::A:::::::::::::S:::::::::A:A:N::::E:::TG:::::A::ER::E::: rrnAC1938 ::::::S::::::::::::::::::IL::D:::::E:RG::D::::D:LET:::::D::: HVO_A0553 ::R::::::::::::::H:::A::::VH:::A:LNT:S:::AT:::D::K::VES:R::: consensus ADHDVIVAEGAGSIAEINLHDRDLANIETARFADADILLVADIERGGVFASLYGTLELLP #oth 4431.11......1..1.1111....2.11..2..412122......1..114..11.2. HQ1404A ::::::I:::::::::::F::H::::::::::T::R:II::::::::::::II::::::: Hut0161 :R:::::::::::::::::Q::::::V::::::::S::::G::::::::::::::::::: VNG1576 ::N::V::::::::::L:::::::::L::::::::T::::V::::::A::::H:::A::: Hmu2011 DEYS:::::::::A:::::Q::::::V:::::T::SV::LG:::::::::::::::::A: hla0296 ::::::::::::::::::::::::::V:C::::::A:VIAV::::::A:::::::::::: Hbo0924 RQ:::VI:::::::::::::H:::::V::T::::::V:::::::::::::::V:::::V: NP5126A S::::::::::::::::::Q:::::::::::::::::V::::::::::::AIV::V:::: rrnAC1938 QS::::::::::::::::::::::::::::::::::::::::::::::::::V:::::V: HVO_A0553 SEA::V::::::::::::::::::::::::::S:::V::A::::::::::::L::::::: consensus DDIRDRVAGAVITKFRGDPSLLEPGIDAIEARTGVPVLGVLPYDDPGLPAEDSVSLPAA- #oth 112.3112.31.1.....52..31.2422.21.11.112.2.1......1...11..341 HQ1404A ::V:NQ:I:I::::::::K:::A:::QT::D:::I:::S:I:::::::::::::::::V: Hut0161 E:L::::::L::N:::::R::::::LA:::E::::::VA:::H::::::::::L:::S:: VNG1576 ::::::::::::::::::R:::D:::TE::::::::::::I:H::::::::::::::DP: Hmu2011 EA::E:I::VA::::::::T:::D:::EL::::::::::::::::::::::::L::::G: hla0296 ::V:E::::::::::::::A::::::EE:::::E::IV::V:H::::::::::L:::D:D Hbo0924 ::V:::I:::::::::::E:::SD:L::F:E::::::::::::::::::E::::::::I: NP5126A E:::E::::V::::::::V::::::LETL::K:::::::::::::::::E:::::::::: rrnAC1938 ::::KQ::::::::::::Q:::D:::::F:D:::::::::::H::::::E::::A::PV: HVO_A0553 E:V::::V:::::::::::::::::V::::E::::::::::::::::::E:::LA::::: consensus --GERAVVGDDDGVPDAATVTVAVPRLPRISNFTDLEPLAREPGVRVAYVPLDATLDA-- #oth 11222325.33132233631111..11.13..31.35..132....1213.1.3512611 HQ1404A :::::S:R:A::DA:AEQ:::::::::::A::TA::D:::AV::::::F::::VS:SR:: Hut0161 :::::GTW::E::::PDDC:::G:::::HL::VA:VA::::::::::EFL:::SGAAT:: VNG1576 ::S::V:D:GQ:::::::S::::::H::H:::::::A::::T:::::::Q::::P:A::: Hmu2011 ::DQ:::::A:::::E::::::G:::::H:::::::::::AV::::I::L:::G:::R:: hla0296 GE:GPG:S:T:::::EEE::RI::::::::::::::T:::::::::::::::::::::PL Hbo0924 ::D:::A::ASANESE:-AI:I:::::::V::A:::::::A::::::E::::::D:SS:: NP5126A ::D:S:TL::::::A:GR::::::::F::A::V::I:::::V:::::RF:::::P:S-:: rrnAC1938 :::::S::::::A::::ES:::::::::::::::::Q:::H::::::::I:P::A::D:: HVO_A0553 ::::::T:::::::AAEHA::IG:::::::::A::FG::SET:::::::L:::::::G:: consensus --ADAVVLPGTKNTVDDLLALREAGLDDALRAFDGPIVGLCGGYQLLGERITNADIEGT- #oth 112.11111.1...1..11.322111332135.2..1..1.....1..11133253.221 HQ1404A ADI::::IT:::::::::R:::AS:F::E::E:E::::::::::::::::L:AIHV:E:D Hut0161 :::::LA:::::::::::::V:DSR:GA:IS::::::::I::::::::::LR:VGV:S:: VNG1576 ::::::::::::::::::R:A:::::GR:::::::::::::::::M::D:::D:AT:S:: Hmu2011 ::I:GL:::::::::::::::C:::::E:I:T:S::::::::::::::::::::SV:::: hla0296 AD::::::::S::::::::::::::::E:I:R:E:::::I::::::::::::G::::::: Hbo0924 ::::::::::S:::A:::R:C:::::H:R:HE:S::::::::::::::::LR:VGA:SV: NP5126A ::::::::T::::::::A::A:::::Y:R:::::::V::I::::::::::LLD::::::: rrnAC1938 ::::::::::S:::::::R::TD::FG:R::S::::V::::::::M:::A::::T::::: HVO_A0553 ::V:G:::::S:::::::::::D::F::E:AG::::V::I:::::::::::E::::::S: consensus ------------------GDT-ETVAGLGLLPVETRFSPDKRVEPVTRELDGVGPLAGAT #oth 11111111111111111143424314.223..12.4.243.1.2413344214.123212 HQ1404A SNEKTEIEPAPSNDSNDDDSGHQ:LS:::I:::::Q:::T:::A:::WT:::F::::D:: Hut0161 ::::::::::::::::::TA::G:::::E::::::H::AE:::TAG:Y:AT::::I:::: VNG1576 ::::::::::::::::::A:DLGA:D:V:V:::::A:Q::::::A:::::ADC:A:G::: Hmu2011 :::::::::::::::::::::::::::VSR::::::::ET::::Q:SVPV:::::ID::: hla0296 :::::::::::::::::::SE:S::E:V:V:::::H::::::::R:::TVA::::::::: Hbo0924 ::::::::::::::::::RGG:DELP:F::::::::::TE:::A::RWRF::T::FDEFA NP5126A :::::::::::::::::::::::::P:V:::::::::H:E:T::::::T:::C::::::S rrnAC1938 ::::::::::::::::::::A:DR:E:::::::T:E::ES:T::H:Q:NI::::::S::S HVO_A0553 ::::::::::::::::::::D:::::::::::IV::::R:::::::SV:F::A::::::: consensus GTVSGYEIHMGETTLPGGAA------------------RPFGP----------------- #oth .314.....2.3124535251111111111111111112.34322211111111111111 HQ1404A :M:T:::::A:Q::AC:PVQ::::::::::::::::::T::ESLTTERIESTDNTADLSQ Hut0161 ::::::::::::::V:D:V:::::::::::::::::::::I::::::::::::::::::: VNG1576 :A:T:::::::R::V:D:VP::::::::::::::::::Q:V::::::::::::::::::: Hmu2011 ::A::::::::::SVAAS:H::::::::::::::::::::L::::::::::::::::::: hla0296 ::AA:::::::RSSPT:ET:::::::::::::::::::::L::::::::::::::::::: Hbo0924 :::::::::T:::S:VAD:DTLSGADASPNADTLSDAGT:VA:FVA:::::::::::::: NP5126A :P:::::::::QSR:LSPVD:::::::::::::::::::::EE::::::::::::::::: rrnAC1938 :::E:::::::DS::T:A:::::::::::::::::::::::DG::::::::::::::::: HVO_A0553 :::D:::::::DSRIV:::-::::::::::::::::::T:VSG::::::::::::::::: consensus -----DS-------AATGRVLGTYLHGLFENDAARDAFVDAVFAAAGRDRP--------- #oth 111114112222112132512.1.1.11.4.354151.2343124.2432.222222111 HQ1404A GMTNHH:RDPVALG:::DS:I::::::::D:E:VCE:::ES::S::NT:::::::::::: Hut0161 :::::E::::::::V:NQQ::::::::C:::RRL:::::EN::EQ::VE::::::::::: VNG1576 :::::A::::::::::R::::::::::::G:::::RG:R::::::::VEQ:A:::::::: Hmu2011 :::::::::::::::::QD::::::::::::EQI:S:::::LY:H:D::::::::::::: hla0296 :::::E:::::::::::::A:::::::::::G:V:::::ST::EM:DES::TEPSRSAG: Hbo0924 ::::::GRADATLGI:R:::::::::::::::EV::::C:HL:::::KS::::::::::: NP5126A :::::RG::::::::::DA:::V::::::::RL::A:::R::Y:S:::S::::::::::: rrnAC1938 ::::::G::::::::G:DT:::::::D::S::T::::::RNT:ES::TVL:A:::::::: HVO_A0553 ::::::G:::::::::L:S:A:::I:D::A:::P:N:::::IYES::::::ATTTGTAGA consensus --DADTPDRS-PYDRAAALVSE-LDLA----PLGL------SDD #oth 115634455311212..4.1552212522333215111445525 HQ1404A :::I::TS::D::E:::H:::S:ISFES:::I::H:::PLTELK Hut0161 ::ERTVAQSD::F::::E::EP:I::PAVVPSVAE:::TSGR:Q VNG1576 ::P:::::Q:::S:A:::::DAHV::D:::::::V:::PPAP:A Hmu2011 ::GSERSVQT::F:D:::::R:::::SALDL:A:R:::::::ES hla0296 :::P:DT::::S:::::D::A:NV:::::::AA:::::::GELE Hbo0924 ::TG:ELAV::::::::::::R::::E:::::::F:::EAVG:: NP5126A ::E::::::::::::::::::::::::::::::::AAESLS::: rrnAC1938 ::ATGRA:GD:::E:::G:ITDHV::G::::::::::::::::Q HVO_A0553 DA:::E:GAGD:::::::::ADN::V:ALCDS:::::::::-EE