[L] (RecA) COG0468 RecA/RadA recombinase 9 genomes BUD0445 9 proteins a Hsa Halobacterium sp. NRC-1 b Hma Haloarcula marismortui f Hvo Haloferax volcanii g Hbo Halogeometricum borinquense h Hmu Halomicrobium mukohataei i Hut Halorhabdus utahensis j Hla Halorubrum lacusprofundi q Nph Natronomonas pharaonis x Hwa Haloquadratum walsbyi VNG1665 rrnAC1532 HVO_2383 Hbo2084 Hmu2078 Hut1602 hla1629 NP1788A HQ3173A

Pairwise sequence scores
Consensus score	1681	HQ3173A	VNG1665	NP1788A	hla1629	HVO_2383	Hbo2084	Hut1602	rrnAC1532	Hmu2078
1222	HQ3173A	1904	1093	1089	1039	1146	1197	1074	807	1044
1214	VNG1665	1093	1771	1103	1054	1147	1174	1059	810	1038
1297	NP1788A	1089	1103	1717	1161	1215	1183	1165	912	1153
1339	hla1629	1039	1054	1161	1745	1221	1265	1173	991	1250
1446	HVO_2383	1146	1147	1215	1221	1682	1434	1181	952	1218
1435	Hbo2084	1197	1174	1183	1265	1434	1705	1186	958	1221
1338	Hut1602	1074	1059	1165	1173	1181	1186	1670	925	1214
1056	rrnAC1532	807	810	912	991	952	958	925	1433	1067
1351	Hmu2078	1044	1038	1153	1250	1218	1221	1214	1067	1717

266 symbols
consensus       VSE---PISTGCDALDDLLGGGFERGTVTQVYGPPAAGKTNLALSAAVEVAAAGGTALYI
#oth            23311153311155314112113111311131122121111321431241..313511.2
HQ3173A         M:R:::LL::::QS::S::::::::::::::::::::::::IM::::LHT::TDSM:V:V
VNG1665         :R:DDTHLP:::G:::E:::::V:::::::L::::::::::V::TT::TT:::::L:V:V
NP1788A         M:::::::P::::TV:T:::::::::::::L:::::S:::::::::::Q:::D:::::::
hla1629         ::D:::::P:::RPV:::::::::::V:::::::::::::::::A:::::::G:DR::::
HVO_2383        :T::::SV:::::::::::D::::::::::::::S::::::V::::::R:::::::VV::
Hbo2084         ::::::SVT:::RS:::::::::::::::::::::::::::V::::::R:::::::VV::
Hut1602         ::D:::::::::::V:::::::L:::A:::I::Q::::::::::G::::T::::ES:::L
rrnAC1532       ---:::-----------------------------------------M::::::DA::::
Hmu2078         ::::::YV::::AEI:::::::::::A:::I::::::::::::::G::::::::DS::::

consensus       DTEGLSADRFEQLAEARA------EDVEALASRLIISEAHDFEDQEEAVRDAAEFAAQAD
#oth            ....2.41.22.31422354341252434423222311.21112.43..1.1311.4421
HQ3173A         ::::I:S:::R:I:DGVVDDSS:SV:RDS:T:QV:M:D:::::A:AT::::T::::NR::
VNG1665         ::::::LA::Q::L::::::::::T:P::ASANV:V:D::::DE:AQ::::T:D::DR::
NP1788A         ::::V:L:::::::RGAT::::::D:L:GTT::V:::D:L::D::R:::Q::GDL::T::
hla1629         ::::::I:::::M:AG::NRPDVD:T::EI::::V::::Y::D::R::::::E:L:EEIE
HVO_2383        ::::::V:::Q:::::V:P:::::::::SVT:::M::::Y::::::Q:::::E::::S::
Hbo2084         ::::::V:::Q::::HV::GPE::QSI:DVT::::V:::::::E:::::::TT:::E:::
Hut1602         ::::V:I::L::::D::G::::::-::SE::::I:LT:::T::E:Q::::::E:::S:V:
rrnAC1532       :::::::::M::V:RG::RGTA::QT:DD::G::::T::L:YDE:T:::Q:::::::EVE
Hmu2078         :::::::::M::I:G:::SETD:::TLA:::E:IVV:::L::::::V::Q::::L:S:VE

consensus       LIVLDSATGFYRL----------------------ERT-DDDGGEALRRVARQITHLLSL
#oth            .111..1......11111111111111111111112.342622.12..5114.1....2.
HQ3173A         ::I::::::::::QRTLGGTLENNIGTDGASSENT:::ETA:::DT:::LTS::::::::
VNG1665         :::V::V::::::::::::::::::::::::::::A:GG::TT:D:::Q::D::::::::
NP1788A         :V:::::::::::::::::::::::::::::::::::D:T::D::T::E::T:V::::G:
hla1629         :::::::::::::::::::::::::::::::::::::AG:TE:::S::K::K:V::::::
HVO_2383        ::::::::::::::::::::::::::::::::::::::AEG::::::::::::V::::::
Hbo2084         :V::::::::::::::::::::::::::::::::::::M:K::::S:::::::V::::::
Hut1602         :::::::::::::::::::::::::::::::::::::::EQED:::::A:::::::::A:
rrnAC1532       :::::::::::::::::::::::::::::::::::R:D::E::::T::D:::::::::::
Hmu2078         :::::::::::::::::::::::::::::::::::::D::G:::::::D:::::::::::

consensus       ARKHDLAVVITNQVFTDPDSD--RVRALGGHTLNHWTGAVLRLDRFRGGNRRATLEKHRA
#oth            ..1.11..24....12.114.122511...2..3..11211.21.....2..1.....21
HQ3173A         ::::N::::::::::::::T::::::P:::Y::E:::::::::E:::::K:::::::::S
VNG1665         :::::::::V:::::::V:N:SD:A:P::::::A::::T::::::::::T::::::::::
NP1788A         ::R:::::::::::Y:::EA:SS:::P::::::S::S:T:::IE::::::::::::::Q:
hla1629         ::R::I::::::::::::::::::D:::::N::::::::IV:V:::::::::V::::::S
HVO_2383        :::::::::L::::YA::::::::T::::::::E::::T:V:::::::::::::::::::
Hbo2084         :::::::::::::::S:::::::QI::::::::E::::::::I:::::::::::::::::
Hut1602         ::::::::AF:::::S:::G::::::P:::::::::SSL::::::::::K::::::::H:
rrnAC1532       :::::I::LY::::::::::::::ST::::::::::S::IV:::::::::::::::::::
Hmu2078         ::::::::AV:::::A:::::::GT:::::::::::S::I::::::::::::::::::::

consensus       KPAGETATFQITDAGLAGTDEI----
#oth            .12.1212.4.125.34464664321
HQ3173A         ::T::SV::V:::T:V:DHEP:S:::
VNG1665         ::D::H:Q:::::G:IDAASADDY::
NP1788A         :A:::::R:K:::S::E:V::GV:::
hla1629         ::::D::::::VAD:::ESA:T::::
HVO_2383        :::::::::K:::R::SA::V-::::
Hbo2084         :::::::::E:::G:ISS:QL-::::
Hut1602         :AT:D::R:::::::MS:VE::::::
rrnAC1532       ::::D::Q:R:::S::V:D:TPETPQ
Hmu2078         :A::D::Q:R::E:::::GQDRSLD: