|
Pairwise sequence scores | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
Consensus score | 1361 | VNG0322 | HQ1575A | hla2735 | HVO_0802 | Hbo0733 | Hut0566 | NP1188A | rrnAC1802 | Hmu0872 |
664 | VNG0322 | 1236 | 548 | 467 | 535 | 555 | 539 | 562 | 480 | 520 |
925 | HQ1575A | 548 | 1707 | 724 | 828 | 823 | 665 | 769 | 663 | 662 |
913 | hla2735 | 467 | 724 | 1480 | 854 | 776 | 703 | 770 | 600 | 617 |
994 | HVO_0802 | 535 | 828 | 854 | 1463 | 942 | 708 | 739 | 713 | 658 |
956 | Hbo0733 | 555 | 823 | 776 | 942 | 1548 | 755 | 788 | 600 | 667 |
920 | Hut0566 | 539 | 665 | 703 | 708 | 755 | 1537 | 822 | 697 | 712 |
966 | NP1188A | 562 | 769 | 770 | 739 | 788 | 822 | 1583 | 730 | 791 |
841 | rrnAC1802 | 480 | 663 | 600 | 713 | 600 | 697 | 730 | 1444 | 834 |
851 | Hmu0872 | 520 | 662 | 617 | 658 | 667 | 712 | 791 | 834 | 1381 |
245 symbols consensus ------------MELLLGESLSLLLVLAGAGLSIAEALAPGAHFIVLGVALLAAGLVGLL #oth 112455433333565233531142.323.221533.13...1112.1.11.131.13.12 VNG0322 ::::::::::::::GVF:Q:::FV::VI::V:C::::::::::L::::::::::::A:MF HQ1575A ::MVTQAISVVAQLS:PA:T:::::IT::L::::L::F::::::V::::S:::T:::::: hla2735 ::::MDVL::VQSG::SPDT:P:::LT::LL::M::::::::N:::V:I::IG:::G::: HVO_0802 ::MAYPPL:PLQTG:VSP:T:P:::::::L:::L:::I::::::V:::::::::::A::: Hbo0733 ::MLRSPLTAFLQPTIPPDL:PYM:IV::I:V:L:::::::::L::::::::::::I::: Hut0566 :::::::::::::VTV::AD:::::L:V::L:V:G::F::::::::::I:::V::::::A NP1188A :::::::::::::AE:::Y:VPF::::V::V:MVM:GF::::::::V:::::T::::::: rrnAC1802 MVNPLATVAPLQA:P:::M:::I::F::::::IVG::::::T::F:::::::T::::::F Hmu0872 ::::::::::::-MS::S::::T::FVG::L:LV:::V::::::F:::::::T::V:::F consensus LPP----GAAAPLVLAGLVLVFGAAALYGYREFDIYGGKGSGQTSDSDSLKGKTGRVTER #oth 35513222343432133212331331122.142131323.432.21.32.3.3412.122 VNG0322 VLS::::::T:-FQ:::::::V:MV:::V::YYE::E:T:::::QS:SD:R::R:Y:VDP HQ1575A :--:::::T:S::::S:::VL::S:::L:::::::::TT::E:::::N::T:TY:::::: hla2735 :TSLGVA::GLT::M:V:T:L:::::F:::H:::L:::::QQ::::::A::::::T:::E HVO_0802 IA:::::-L:S:II:GL::F::::L:::::::L:::::::E:K:::::A:T::M:::::: Hbo0733 :G:::::SL:G:I::GV:::::::L:::::::::L:::::::K::::A::::R:A::::: Hut0566 ::::SL::IF:VVIM:::::GV:SM:::A::Q::F:::::T:R::::::::::::::::: NP1188A VGG:VLP:::L:::::AV:::A:G:::::::Q::F::::::::::::S::Q:Q:::::Q: rrnAC1802 I:A:SL::IL:::I:TVV::ATT:VT:W:::KL:-FAAP:R:::LS::::T:QF:T:::: Hmu0872 S:V:G::::LGI::::AA:::ATGLT:W:::RL:::D:E::A::L::N::R::F:::::: consensus VTPTDGEVKLDD-GGFNPYYAARSVDGEIEEGEEVMVVDPGGGNVVTVEAVAG-GEDDID #oth ..544.211.3511..112.2..25523131131.2.1.......21..33461561312 VNG0322 :::RE:R:D:EH::::DSS::::TTT:T:PADT::V:::::::::::::P::D:------ HQ1575A ::::Q:Q::::A::::D:::S:::::D:LTA:T::V:::::::::L:::PLV:::V:E:: hla2735 ::TAG:::::SG::::::::::::IE:T:::::::::::::::::::::SMGY:V::::: HVO_0802 ::::S::::::E:::::::::::::H::L:A:T::I:::::::::::::G:GP::::E:: Hbo0733 ::::Q::::::EG::::::::::::S:::P::S::::::::::::I:::SFE::TL:::: Hut0566 ::G:G::::::S::::::H:Q::AF:ED:P:::::::::::::::::::SM:TLST:::E NP1188A ::ED:::I:::S::::::::Q::AL::::G:::K:::I:::::::::::::SA:F::::: rrnAC1802 ::RS::::::E:::::::::Q:::SGDP::::A::I:I:::::::LE::::ES::A:E:: Hmu0872 ::Q:::::::Q::A::::::Q:::::::::::A::::::::::::::::::S::-G:A:: consensus RELARDRARRD----EDRAPDA----------------------------DSESERE--- #oth 331223253461111357446452222233332212233333534111112624133533 VNG0322 ---:AAAGNDA::::::GV:G-::::::::::::::::::::::::::::-------::: HQ1575A :A::TEQ:N:ETTNS:NED:TPTPTPNSNMTQTDDTQSDEQRDSESESGLE::::::RER hla2735 K:::A::::KE::::AQ::A::S::::::::::::::VDDERE:P:::::ET:T:::::: HVO_0802 :::::E::::H:::::ES:ERD::::::::::::::::::::::::::::EE:L:::GTE Hbo0733 :::::G:SNDG:::::G:SSSDD::::::::::::::EDGETVTD::::::::T:T:QAK Hut0566 A::D:G:EET::::::TH:D::E::::SPTRETSDGGVGEPTGEF::::::H:T:SA::: NP1188A ::::A::K:KT::::SNDE:TPGNESAAASEPESDGGSNEQDHSD::::::T:::S:PA: rrnAC1802 :A:E:::N:S:::::A:TE:--::::::::::::::::::::::::::::ER::::A::: Hmu0872 :Q:ET::EQSV::::T:AE:ERE:::::::::::::::::::::F::::::PDA:SDAA: consensus ----- #oth 32111 VNG0322 ::::: HQ1575A EPDLS hla2735 ::::: HVO_0802 GV::: Hbo0733 D:::: Hut0566 ::::: NP1188A ::::: rrnAC1802 ::::: Hmu0872 :::::