| ||||||||||||||||||||||||||||||||||||||||
| Pairwise sequence scores | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Consensus score | 5518 | VNG1303 | hla1952 | HQ2559A | HVO_1656 | Hbo3183 | Hut1201 | NP3966A | rrnAC1111 | Hmu1550 |
| 3297 | VNG1303 | 5805 | 2864 | 2474 | 2695 | 2671 | 2630 | 2890 | 2688 | 2834 |
| 3835 | hla1952 | 2864 | 5807 | 2995 | 3280 | 3396 | 3077 | 3150 | 3094 | 3118 |
| 3671 | HQ2559A | 2474 | 2995 | 5929 | 3083 | 3648 | 3069 | 2887 | 3076 | 2999 |
| 4125 | HVO_1656 | 2695 | 3280 | 3083 | 5477 | 3775 | 3155 | 3321 | 3228 | 3295 |
| 4206 | Hbo3183 | 2671 | 3396 | 3648 | 3775 | 5658 | 3329 | 3300 | 3459 | 3306 |
| 3896 | Hut1201 | 2630 | 3077 | 3069 | 3155 | 3329 | 5548 | 3271 | 3193 | 3369 |
| 4010 | NP3966A | 2890 | 3150 | 2887 | 3321 | 3300 | 3271 | 5461 | 3337 | 3517 |
| 4033 | rrnAC1111 | 2688 | 3094 | 3076 | 3228 | 3459 | 3193 | 3337 | 5752 | 3769 |
| 4118 | Hmu1550 | 2834 | 3118 | 2999 | 3295 | 3306 | 3369 | 3517 | 3769 | 5605 |
852 symbols consensus ---------------------MSDPTARNRLDEEASPYLRQHADNPVNWQPWDETALEAA #oth 1111111111111111112233243451...1414....21..1...2....114.223. VNG1303 MPPAGGDATPGFTRAGALPGG:TH:::::::::A::::::::::::::::::G:P:FS:: hla1952 :::::::::::::::::::::::Q::E:::::G::::::Q::::::::::::G:E:F:R: HQ2559A ::::::::::::::::::::::::TPV:::::N::::::T:::E:::::::::DR:::Y: HVO_1656 :::::::::::::::::::::::::VG:::::::Q::::::::::::::::::::::D:: Hbo3183 ::::::::::::::::::::::::ALG::::AD:Q::::Q::::::::::::::::I::: Hut1201 ::::::::::::::::::::::T:::D::::AA:G::::QA::::::H:::::::::ST: NP3966A :::::::::::::::::::::-----ME:::::AS::::::::::::A::::::::::T: rrnAC1111 ::::::::::::::::::MSDAT::::::::::AE::::::::::::::::::::::::: Hmu1550 ::::::::::::::::::MSSD:G::D::::::AE:::::::::::::::::::Q:::T: consensus REHDVPIFLSIGYSACHWCHVMAEESFEDPDIAAVLNENFVPIKVDREERPDLDRIYMTI #oth 224.3.1.1.1..11.......11...3.242.33..15...1.....1...1.431122 VNG1303 :::::::::::::::::::::::::::A::E:::::::Q:::V:::::Q:::V:DL:::V hla1952 ::::::V:V:::::S::::::::::::::ES:::::::K:::V:::::::::V:STF::V HQ2559A ESA:K:::::V::A:::::::::::::::DTV:TI::DS::::::::::::::::::Q:: HVO_1656 ::A:K::::::::::::::::::D:::S:::::E::::E:::V::::::::::::::Q:: Hbo3183 ::K:R:::::V::::::::::::D:::::D:V::::::S:::V::::::::::::::Q:: Hut1201 EDE:K::::::::A:::::::::::::::EAT::::::::::::::::::::V::::Q:L NP3966A A:R::::::::::A:::::::::D:::D:::T:D::::H:::::::::::::V:NV::QV rrnAC1111 ::R::::::::::A::::::::E::::::EA::EQ:::::::::::::::::::SV::S: Hmu1550 ::::A:::::::::::::::::ED:::S::ET:TL:::H:::::::::::::::A:::S: consensus CQLVTGGGGWPLSVWLTPEGKPFYVGTYFPPEERR---GQPGFRDLLEDIAESWED--DR #oth 2.32213......111..312..211..111222311125.1.5322223343.53313. VNG1303 S:VTR:S:::::::F::::R::::IT::V:K:PT::::D::::ES::::VTAN:RE::N: hla1952 S::::::::::::A:C::K:::::::::::::P:::::N:::::::C:R::D::A:PEQ: HQ2559A ::::::::::::::::::D:::::::::::KT::SDRGDT:::LEICQSF:TA::N:::: HVO_1656 ::Q::::::::::::::::::::F::::::::P::::::A:::::IV:SF::::LT:::: Hbo3183 ::::::::::::::::::Q:::::::::::K::::DRGNV:::L::CRSF::A::N:::: Hut1201 A::LGQQ:::::::::::D:R::::::::A:DS:G::::R:::A:::::LK:T::N:::: NP3966A ::M:R:S::::::::::::::::H::::::::PTK:::NT:::KSV::::::A:D:TER: rrnAC1111 ::Q::::::::::A::::::E::::::::::::K:::::::::G:::QRLSG::S:PEQ: Hmu1550 ::Q:::R::::::A::::D:E::::::::::::::::::M:A:GQ::::::G::S:SEQ: consensus EEIENRADQWTDAIRDELE---------------DTPDPPAD----------PPG---DD #oth 532341.4..25224231111111111111111141142342222222222252311152 VNG1303 GDLDA::E::LQ:A:G::::::::::::::::::SV:::VD:::::::::::AGT::::S hla1952 ::MKR::::::TSA::::::::::::::::::::SV:E:D:AGDASGTGGAG::::::P: HQ2559A S:L:S::N::A:TLQ:R::VDTNVDTNIDVDDDD:V:A:DIASPQTDSDADDDST:::M: HVO_1656 :::::::E:::S::T:R:::::::::::::::::E:::T:GE::::::::::A:::::S: Hbo3183 :::::::Q:::A::Q:Q:::::::::::::::::A:::D:GE::::::::::S:::::TE Hut1201 DG::Q:::::A:::SG::::::::::::::::::G::T:-:::::::::::::SDVRS:E NP3966A QQL:QQ::::ATS:SS:::::::::::::::::::::E:V:E::::::::::::::::EE rrnAC1111 A:M::::Q:::E::ESD:::::::::::::::::A::AD:E:::::::::::-:A:::E: Hmu1550 ::MY:::R::::::ESDVG::::::::::::::::VGQ:-G:::::::::::V:D::::E consensus ILDAAADAAIRGADREHGGFGSGGPKFPQPGRIHALLRAYARSGRD-----------EAL #oth 4153336214232.333..1.3212...23..2431213425434222111111111432 VNG1303 P:P:::GSIADA::AT:::::R:-Q:::HA::LRV::::TQ:DAG:GA:::::::::R:A hla1952 L::E::A:::::Y:D:Y:::::::A:::M::::DV:::::::::G::::::::::::A:: HQ2559A L:TSVST::::AT:N:Y:::::R::::::T:::E::I::H:ETN:E:::::::::::T:: HVO_1656 :::TTVQ::L:::::D:::::GD::::::::::D:M::G::V:::R:::::::::::::: Hbo3183 ::GEV:K::L::::::Y:::::::::::::::VE::::S:VH::E:::::::::::::P: Hut1201 L:R:G::::V:T::::Q:::::::::::::::LQL::::D::F:SERSADGDGADPG:YR NP3966A F::T::N::VGN:::::::W:R:-Q:::H:::::L::C::QQTD:E:::::::::::TYR rrnAC1111 :IQT:GTI:H:::::QD::W:::::::::N::L::::::::DG:QE:::::::::::DY: Hmu1550 A:Q::V:::::A:::::::W:N:-::::::::L:Y:M:EV:::D:::::::::::::DVR consensus DVATETLDAMADGGLYDHVGGGFHRYATDREWTVPHFEKMLYDNAELPRAYLAGYRLTGD #oth 412441.12.151.23.12.......11.13.2..........1.3122322312132.3 VNG1303 SA:RH::T:::::::H::::::::::C::::::::::::::::Q:A:A:L:VD:::AL:: hla1952 TA::G:::G::R::M::QI::::::::V::Q:::::::::::::::::M:::D::::::: HQ2559A :A::A::::::A::I:::::::::::::::K::::::::::::::::S:V::SA:QH::R HVO_1656 :::RQS:::::N:::R::L:::::::CV:::::::::::::::Q:G:ASR::DAA::::N Hbo3183 T::M:::::::G::M:::::::::::::::Q:::::::::::::::I::V:::AH::::R Hut1201 A:L::S::::V:::::::::::::::::::S:::::::::::::::I:::LIE:::V::: NP3966A :::V:::::::S::::::::::::::CV::::::::::::::::::I:::F::::QV::: rrnAC1111 N:VE::::V:::R::::::::::::::::QQ:A:::::::::::::I:::F::::QAI:S Hmu1550 S:V::::::::::::F::::::::::C:::::V::::::::::::T:::::::::Q:::: consensus DRYARVARETFAFVDRELTHPDGGFFSTLDAQS----------------------D-EGE #oth 32..41141.14.15...3.21...11....2.412332122222222211122423441 VNG1303 S:::D:::S:LT::::::G::::::YA::::R:PPP::::::::::::::::DAP:GDR: hla1952 AS:::::S::LG:L::::R:D::::::::::R:RPPENRRGNAGSDESD:::DAD:VADV HQ2559A :::::::H:::::LS:::Q::E:::Y:::::::::::::::::::::::::::::-:::: HVO_1656 :S::T::A:::E::R:::::D:::::A::::::::::::::::::::::::::::-:G:: Hbo3183 AD::E::::::D::A:::R::::::::::::::::::::::::::::::::::::-:G:: Hut1201 E::::::G:::E:L::::G::E:::Y:::::R:::::::::::::::::::::::-:::: NP3966A ::::EIVA:::::::::::::::::Y:::::E::::::::::::::::::::EDSTGTR: rrnAC1111 E:::S:V::::E::Q:::Q::::::::::::E:APHSESRSDSEQSSGESPRDDP:G:T: Hmu1550 E:::E:::::::::E:::::E::::::::::::VPPAGRR::::::::::::EDA:A:P: consensus EGAFYVWTPEEVRAAVDDETDA------------DLFCDRYGVTEGGNFE-GTTVLTVSA #oth ..411..1.35133135324311111111111112333211.1235....424..12342 VNG1303 :::Y:::::NR:A::MR:HAA:APCDTADADVLA:AA:R::::DDT::::A::::P:::: hla1952 :::::::::A::-D::L::PA:::::::::::::S:AK::::IRS:::::R::::P:IA: HQ2559A ::R:::::::TI:N:IT:QQI::::::::::::::IAI::F:::::::::::S::::AT: HVO_1656 ::T::::::DD::D-LLP:L::::::::::::::::::::::::P:::::DK::::N::: Hbo3183 ::T:::::::Q:HE:LA:::R:::::::::::::EV:::Y::::S:::::N::::::::: Hut1201 ::K:::::::::::::G::::V::::::::::::S:VL::::I::D::::D:Q::::IA: NP3966A ::::::::::V:A::::N::::::::::::::::E:::E:::::DA::::NA:::::E:R rrnAC1111 ::L:::::::Q:HD:::::::::::::::::::::I:::Y:::::Q::::::A:::A:RK Hmu1550 :::YF::I:D:::::::S::A:::::::::::::::L:::F:I::S::::::K:::::D: consensus SVAELADEYDLDTDEVEDRLDRAREQLFEAREDRPRPARDEKVLAGWNGLMISALAEGAL #oth 235521344434433244624512552122.43.3..2....1.12...111213.3123 VNG1303 ::GAI::AF:TAPATA:AWC:VIDAR:RA::A:::::::::::::::::::AR:Y::AG: hla1952 :I::::::H:MS:EA:REA:TA::VA::::::S::::::::::::S:::RA:::F:TAGQ HQ2559A ::SQ::TK:S:T:::IMSQ:AD::DS::D::M::E::N::::I:TA::::A::S::R:G: HVO_1656 TT:D::::::::ES::::::EK::KA::A:::G:E:::::::::::::::::::F:Q:SV Hbo3183 T:DSV:::HG:T::::T:H::A:::T::DT::S:T::P:::::::::::::::S::Q::: Hut1201 ::D:::AQSG:EV:D:Q:::::::::::D::SE:T::P::::I:::::::A:::::::S: NP3966A PPE:::A:RVM::AT::E:IE::::::::S:AE:S::P:::::::::::::::::::::: rrnAC1111 P:PV::E::ERSE::ITAS:Q::LNET::::K::::::::::::::::::::R::::::I Hmu1550 :IEA:SESSG:EASD::RT:AS::::V:::::E:::::::::::::::::::T:I::::I consensus VLD-DQYADRAADALSFVREHLWDEDEGRLARRFKDGDVAGDGYLEDYAFLARGALDLYQ #oth 2.22264325.42.14.3.23.1.33443.3..44212.434..13.1...11..12312 VNG1303 A::::RF:E:::::IA:A:DT:::G:--:::::SIG:::::V::AA::::::A:::AT:E hla1952 ::G:EP:::I:S:::::C::R:Y::ETET::::WL::::R:P:::D:H:::::::::V:S HQ2559A I:ETE::TEL:N:::::I:T::::S:S:::S::Y:::::DET:::D:::::::::F:::: HVO_1656 ::ED:SL:AD:RR::D::::R:::AETAT:S::VMN:E:K:::::::::::::::F:::: Hbo3183 ::G::E::EL:::::G:A:::::::S::::S::::::::K:E:::::::::::::F:::: Hut1201 A:E::DIL:::V:::E::::T:::::S:L:K:::I::::RVE:::::::::::::::C:: NP3966A ::::PE:::D::A::::C::Q::::T:EV:N:::EG:T:GI::::Q:::::G:::::::: rrnAC1111 :::::::::V::::::::::::::A:A:::N::Y::D:::I::::::::::G::::T:FE Hmu1550 :::::VDP:P:::::A:::::::::S:Q:::::Y::::::I:::::::::::::::T:FE consensus ATGDVEHLAFALDLARAIVEEFYDADAGTLYFTPE-------GGES-LVARPQELTDQST #oth 21.2223.4..23.154353512.23311112133222211132221132.1.33413.. VNG1303 :::A:A::D::::::D:ML:AC:::S::V::E::A:::::::SVDD:VAV:S:ATGTG:: hla1952 V:::P:A:G::::::ATV:SD:::EAD::I:::RDPDGNAGH::DDT:F:::::F::::: HQ2559A T::A::::C::VT::ES:::L::::AGE:::LA:::::::::DA:::::::::D:R:::: HVO_1656 ::::LAP:S::::::::TRR::::::::::::::::::::::S::::::T::::P::::: Hbo3183 :::::D:::::VE:::E::AS:::DA::::::::D:::::::D::A:::T:::::Q:::: Hut1201 :S::PDQ::::::::EE:ESR:F:E::::::::E:AGSD:::A:TD::L::::::::R:: NP3966A ::::::Q:S:::S:G:V:QS:::::::::::::A::::::::::D:::L::::Q:A:S:: rrnAC1111 :::::::::::M::GQ::T:A:W:DEQ:::F:::T::::::::::::::::::::::::: Hmu1550 :::E:::::::::::H::ER::W:::D:::::::T:::::::S::::::::::::::::: consensus PSSTGVAVDLLLALDAFAPDARFADVAEAVLETHADRIRANPLEHASLVLAADRRARGRI #oth ..14.1.233155135.533241462.34125222252333123.41.241224535.66 VNG1303 ::PI:::A:T:D::A::::A:GYD:A:A:L:SRYGSH:EES:GR:PE::::::T::G::R hla1952 :::L:::AET:AL::G:RT:RE::E:::T:VT::::::::S::::V:::R::::V:S:G: HQ2559A :::A:I::QT:N:V:P:TSTD-:SGI:G::ID::::E::GR::::I::AM:::S::::HD HVO_1656 :::L:::TS:F:D:EQ:::::G:GE::D:::GSF:N:V:GS::::V::A:::EKA:S:VP Hbo3183 :::V:::TS:::D::::::::D::A::GS::D:::::::GR::::V::A:::EK::::GS Hut1201 :::A:::::V:VT::E:V:HD::GV::G::::::HSA:A:DA:Q::::::GS::DQH:ST NP3966A ::::::::E::SR:A::D:::G:D::::T:I::::STLES:::S:T:::A::HDS:A::: rrnAC1111 ::::::::::::S:SH:SE:D::ES:::R:IR:::::VSS:::Q::::T::T:TYEQ:AL Hmu1550 ::::::::QA::S:S::V:HD::ETI:AG::::::NK:E:::MQ:::::V::::YL::DL consensus ELTVAAD---ELPDEWRETLAERYLPGRLLSRRPPTDDGLDAWLDTLGLDDAPPIWAGRT #oth .2121311223314421542124.3.332115..22343134.225123223.12112.4 VNG1303 :I::::::::D:::A::DAVGAA:::D:::::::::E::::::QS::DQASV::L::::: hla1952 :V:I:V::::AV::A:::::G::::::A:VAP::::E:::A::::R:DM:E::::::D:D HQ2559A :VVI:H:TDT::SQLI:SDI:ST::::VP::Q::A:VS::ES:T:E::::SP:A:::::H HVO_1656 :::::::::::V:::::A:::S::F::LVV::::G::EE::::::E::::E::::::::E Hbo3183 :IV::G::::S:::SF:QS:::::V:DAV::I::::::D:TP::::::VE::::V:Q::E Hut1201 :::I:::::::I:A::::RVG:V:::A:V:A:::A:EA::AE:::QF::E:::::F:::A NP3966A ::::::A:::D::ET::TS:::T::::::::::::::::::P::AA:DV::V:::::N:D rrnAC1111 :V:LVG::QSDY:T::T:::::Q:I:R:::AH::AEKSRFEQ:::::EV:ES:::::::: Hmu1550 :::LV::::::V:A:::T::::T:::D:::AW:::G:GD::::::V:::::V:::::D:: consensus A-RDGEPTVYACRGFTCSPPTHDLDEALEWF-----------TAGDD------------- #oth 415.24112.1.2511..2.432355123.311111111111555534222221211111 VNG1303 GGD::T:RA:V::-RA::::LD:AAGIT::L:::::::::::AEFSR::::::::::::: hla1952 ::V:::::A:V:E:R:::::ET:::A::::L:::::::::::A:RRRSE::::::::::: HQ2559A Q:::SKA:I:::S:RA::::::S:TD:::::DTDISTAHSDS:S:::IDTNEVDGDTIEG HVO_1656 ::A:::::::::EN::::A:::::::::A::::::::::::::::EGA:::::::::::: Hbo3183 M:::::::::::E:RA::::::SVE:::S:::::::::::::GG:::VDVELDDAD:::: Hut1201 ::-::G::I::::E::::Q:LQ:IED::A:::::::::::::DS:A-::::::::::::: NP3966A ::K::::::::::S::::::K::I:::I::L:::::::::::-----::::::::::::: rrnAC1111 Q:V:DR:::::::N:A::::K:::GT::D:G:::::::::::ETA::SE::::::::::: Hmu1550 E:::::A::::::Q::::::Q:H:RN::D:A::::::::::::EQA-::::::::::::: consensus ------------ #oth 111212222211 VNG1303 :::::::::::: hla1952 :::::::::::: HQ2559A IDLSEGTDSFDN HVO_1656 :::::::::::: Hbo3183 IDLDETDLDID: Hut1201 :::::::::::: NP3966A :::::::::::: rrnAC1111 :::::::::::: Hmu1550 ::::::::::::