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[L] (-) COG1591 Holliday junction resolvase - archaeal type
9 genomes BUD0524 9 proteins
a Hsa
Halobacterium
sp. NRC-1		 b Hma
Haloarcula
marismortui		 f Hvo
Haloferax
volcanii		 g Hbo
Halogeometricum
borinquense		 h Hmu
Halomicrobium
mukohataei		 i Hut
Halorhabdus
utahensis		 j Hla
Halorubrum
lacusprofundi		 q Nph
Natronomonas
pharaonis		 x Hwa
Haloquadratum
walsbyi

VNG2252

rrnAC2847

HVO_0170

Hbo1290

Hmu2972

Hut2355

hla0634

NP0680A

HQ3690A

Pairwise sequence scores
Consensus score1226 HQ3690A VNG2252 HVO_0170 Hbo1290 hla0634 NP0680A rrnAC2847 Hmu2972 Hut2355
845HQ3690A 1153 768 873 903 793 814 818 817 795
901VNG2252 768 1072 806 782 802 847 868 843 840
884HVO_0170 873 806 1057 945 832 835 835 864 818
882Hbo1290 903 782 945 1144 823 834 837 856 825
1013hla0634 793 802 832 823 1355 962 1003 992 949
1083NP0680A 814 847 835 834 962 1287 1037 1038 1008
1142rrnAC2847 818 868 835 837 1003 1037 1297 1105 1103
1132Hmu2972 817 843 864 856 992 1038 1105 1293 1123
1093Hut2355 795 840 818 825 949 1008 1103 1123 1299 

182 symbols
consensus       MANSNAKGDRRERELVNALDEAGFAVMRAPASGSATERELPDVLAGDGETFYAIEAKSSA
#oth            1231.1..1.......13..21...........1..3.1.....1.1..5...1...1.1
HQ3690A         -MAA:R:::::::::::Q::::::::::::::::::::D:::::::N:::::::::::::
VNG2252         ::::::::N::::::::::::T:::::::::::A::K:D:::::::N::E::::::::::
HVO_0170        -MS::R::::::::::::::::::::::::::::::T:::::::::N::V:::::::A:S
Hbo1290         -MS::R:::::::::::K::D:::::::::::::::::::::::::N::M:::::::A:S
hla0634         -VSA:R::::::::::::::G::::::::::::A::::::::::::::::::::::::::
NP0680A         ::::::::::::::::TK::::::::::::::::::D::::::::::::::::V::::::
rrnAC2847       ::::::::::::::::::::::::::::::::::::::::::::S:::::::::::::::
Hmu2972         :VG::::::::::::::::::::::::::::::::::::::::::::::R:::V::::::
Hut2355         :VG::::::::::::::E:::::::::::::::::::::::::::::::D::::::::::

consensus       GDPIYLDGEEVEALLYFARNFGAKPRIGVRFDREDWYFFHPGDLYTTDGGNYRVKKETAL
#oth            .1....3...1.1.21.11....12.112.....2.1....21.12.11.1....111..
HQ3690A         :R::::T:::I:S:I:::Q:::::A:::I:::::S:F::::NE:HV:N::::::::::::
VNG2252         ::::::::::::S:V:::::::::::::A::::::::::::A::H:::A:S:::::Q:::
HVO_0170        :R::::S:::::::V::S::::::A::A:::::::::::::::::V::::::::::::::
Hbo1290         :R::::Q:::::::I:::Q:::::S::A:::::::::::::::::V::::::::::::::
hla0634         ::::::T::::::::F::::::::A::A::::::::::::::::::::A:S::::::K::
NP0680A         ::::::S:::I:::V:::::::::::V::::::::::::::::::E::::::::::::::
rrnAC2847       ::::::T::::::::F:::::::::::::::::::::::::A::H::::::::::::K::
Hmu2972         :::::::::::::::F::::::::::::::::::::F:::::::::::::::::::::::
Hut2355         :::::::::::::::F:S:::::R::::::::::A::::::A:::::::::::::H::::

consensus       ADGTDFEEFVGGSEKVTLDEVGDD------GPD--T------L-A--RGDL-AEEAAEML
#oth            22.1213212.433223.423353111112221442111232151342122552223443
HQ3690A         SA:E:::S::::LSQSR:SDIDS:::::::---::-::::::-:-::----T:DDTT:NI
VNG2252         ::::EL:TLA::P:RTG::DY---::::::---::-::::::-:-::----:--------
HVO_0170        :E:E:::S:T::PTQTK:---:G:::::::---::-::::::-:-::----:--------
Hbo1290         :E:EP:DS::::PAQSR:TD:A:E::::::---::-::::::-:-::----:TD:::DDA
hla0634         G:::::P::::DT:::::::::TGGTATED:::PE:EERRGI:E:VRD:HMPV:D:LDV:
NP0680A         ::::::A::T:Q::::::::IAVG:::::SDV:ET::::REV:G:VE::::S:DD:::::
rrnAC2847       S:::::D::::N:::::::::::::::::::::QSV:::LDV:S:FK::::DK::::T::
Hmu2972         :E:::::::::H::::::A:I:GE:::::D:::QA::::LDI:A:LD::::GV:::::::
Hut2355         :E::::::L::H::::R::::::G:::::::::SA::::LDI:D:FE::::SR::::K::

consensus       --
#oth            21
HQ3690A         DE
VNG2252         ::
HVO_0170        ::
Hbo1290         ::
hla0634         ::
NP0680A         ::
rrnAC2847       E:
Hmu2972         ::
Hut2355         E: