[K] (RPB9) COG1594 DNA-directed RNA polymerase, subunit M/Transcription elongation factor TFIIS 9 genomes BUD0538 9 proteins a Hsa Halobacterium sp. NRC-1 b Hma Haloarcula marismortui f Hvo Haloferax volcanii g Hbo Halogeometricum borinquense h Hmu Halomicrobium mukohataei i Hut Halorhabdus utahensis j Hla Halorubrum lacusprofundi q Nph Natronomonas pharaonis x Hwa Haloquadratum walsbyi VNG0426 rrnAC0218 HVO_1385 Hbo0166 Hmu0675 Hut0919 hla2360 NP0364A HQ2396A

Pairwise sequence scores
Consensus score	870	HQ2396A	Hut0919	rrnAC0218	Hmu0675	NP0364A	HVO_1385	Hbo0166	VNG0426	hla2360
682	HQ2396A	864	544	575	609	630	601	626	537	546
648	Hut0919	544	862	609	654	529	534	598	550	529
720	rrnAC0218	575	609	876	730	621	618	646	558	558
762	Hmu0675	609	654	730	877	621	642	648	568	608
682	NP0364A	630	529	621	621	897	597	646	516	538
691	HVO_1385	601	534	618	642	597	865	646	527	507
743	Hbo0166	626	598	646	648	646	646	870	522	552
579	VNG0426	537	550	558	568	516	527	522	864	587
625	hla2360	546	529	558	608	538	507	552	587	903

113 symbols
consensus       MEFCDECGSMMKTDDG--VWVCGS--CGAEKARDAADESSM-VTTEGQE-ESEVVDMSDV
#oth            .1...1...1.24322115.1.32111.4154335443661122.2113132131.3.13
HQ2396A         :K::::::::::KQ:D::I:T:SD::::::ELA:E::SAT::TS::S:Q:::GA::V::I
Hut0919         :::::::::::::EGD::M:::::::::::TP:E::T::G:::::Q::::AG::::L::S
rrnAC0218       :::::::::::::::E::R:::::::::Y::::N:EA:QE:A:::Q::::::::::T:E:
Hmu0675         :::::D::::::AE::::::::::::::::R::::::::::::::Q:::::::I::T:E:
NP0364A         :::::::::::HSE::::L:::R:::::F::QQGDD:ADR::T:::::DTD:GP::::E:
HVO_1385        :::::D:::L:TPQ::::::::PN::-:H:::::SEK:K:::::::::::S:::::::::
Hbo0166         ::::::::::::::G:::::::::::::F:::::::Q::H::TS:ASR::D::I::::::
VNG0426         :::::D::::::A::E::L:::S:::::HKQPK:PSASF--::V:::::::T::::V::A
hla2360         :K::::::::::SGE:EDH:::S:ED::N:LG::NG:DE--:W:::S:V:::::I:V::A

consensus       DDADIGPTTTAHCPECGNDRARYEMKQIRAADESETRFFTCTECEHKWREDDH
#oth            234232.1.626.12.1113.31111...1.........2.1..4.1.....1
HQ2396A         ::::::::::VI:::::::T::::::::::::::::::::::::N::::::::
Hut0919         E-::AR:::EIQ:V::D::::YW:L:::::::::::::::::::G::::::::
rrnAC0218       :AE:M::::G:R::::::E::F:::::::::::::::::::::::::::::::
Hmu0675         EAE:M::::D:::::::::::FW:::::::::::::::::::::D::::::::
NP0364A         ::SE:::::RVN:::::::::::::::::::::::::::::::::::::::::
HVO_1385        :N:::::::K:I::K::H:V:::::::::S:::::::::::V::D::::::::
Hbo0166         :::E::::::VK:::::H:::::::::::S:::::::::::V::S::::::::
VNG0426         Q:RGL-:::SVV::D:D::E:HWY:Q:::S:::::::::I::::::R:::::N
hla2360         E:KGL-:K:::::::::::::YWY:Q:::S:::::::::V:::::::::::::