|
Pairwise sequence scores | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
Consensus score | 1934 | HQ1240A | VNG0370 | hla2396 | Hut0126 | NP0818A | HVO_0721 | Hbo0815 | rrnAC0696 | Hmu0905 |
1230 | HQ1240A | 2057 | 444 | 977 | 1029 | 1094 | 1155 | 1088 | 1020 | 1070 |
499 | VNG0370 | 444 | 768 | 383 | 453 | 450 | 460 | 431 | 381 | 378 |
1341 | hla2396 | 977 | 383 | 2626 | 1057 | 1216 | 1185 | 1129 | 1009 | 1139 |
1346 | Hut0126 | 1029 | 453 | 1057 | 1946 | 1177 | 1164 | 1122 | 1063 | 1155 |
1523 | NP0818A | 1094 | 450 | 1216 | 1177 | 1969 | 1276 | 1311 | 1135 | 1287 |
1561 | HVO_0721 | 1155 | 460 | 1185 | 1164 | 1276 | 1937 | 1394 | 1140 | 1291 |
1531 | Hbo0815 | 1088 | 431 | 1129 | 1122 | 1311 | 1394 | 2059 | 1081 | 1280 |
1321 | rrnAC0696 | 1020 | 381 | 1009 | 1063 | 1135 | 1140 | 1081 | 2292 | 1298 |
1507 | Hmu0905 | 1070 | 378 | 1139 | 1155 | 1287 | 1291 | 1280 | 1298 | 1924 |
340 symbols consensus ------------------------------------------------------------ #oth 111111111111111111111111111111122222222212222122222222222222 HQ1240A :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: VNG0370 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: hla2396 MADSTSSKAASQPSIPHVQRGMSPCPRREGLTVSPGGRLSSPVRPPSDLAAVPSTGLART Hut0126 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP0818A :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: HVO_0721 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: Hbo0815 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: rrnAC0696 :::::::::::::::::::::::::::::::MSHSQRGICSVAGDPGLKTLAATCQKSVS Hmu0905 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: consensus ---------------------RTRVDMHVKVLDERVVERAKARGIDVLVYAPHFTRLPDI #oth 334433334444244443455532214111212351253112122132111111412342 HQ1240A ::MVTANLTPYRTDDVTETTAS::::L:::::SDE::TC::::E:::I::::::::FDN: VNG0370 :::::::::::::::::::::--------------------------------------- hla2396 GSLSNDTPLLGDEERPPVTRP:::::A::::::DD::AL::E::::A:::::::::::T: Hut0126 :::::::::::::::::::::V:A::P::::::GT::R::::::L:::::::::K::D:: NP0818A :::::::::::::::::::MD:F:L:A:::::::T:A:::::::L:G::::::::::::: HVO_0721 ::::::::::::::::VSATTT::::::::I::::::S::::::::::::::::V::::A Hbo0815 MTNHAAISSTDVTATSASLSPS::::::::I::::::S::::::::::::::::E::::: rrnAC0696 QIAKTETPNGSTELALTVQPEGYA::L::::::DG:::::::::L:A::::::::::SE: Hmu0905 :::::::::::::::::::::---::::::::::::::::::::L:::::::::::::E: consensus RARAAQFSDDDLLVVPAREVFTGSWRNRRHVLAVGLEDPIPDFITLEAAMAEFDRQDAAV #oth 253124221221213121131214134121312311531211222332235333113223 HQ1240A :S::::::::::::I::::I:::::QT:::I::I::NE::::::S:TG:LDAL:::G::T VNG0370 ------------------------------------------------------------ hla2396 :K:::R::::::T::::::::::D:G::::I:VL::DE:V::Y::F::::::A:::::V: Hut0126 :E::E:Y:::E:::::G::::::::::::::::::::A::::::::::::N:::::GV:: NP0818A :E:::E:T::::::::G::::::D::::K::::::::A:V:::::::::::::::::::: HVO_0721 ::::ER:::::::::::::::A::::D:K:::::::S::V::::::DG:F::::::G::T Hbo0815 ::K::E::::E::::::::::::T::Q:::L::I::T::::::::M:::F:T:A::E::: rrnAC0696 :RQ:EA:::EE:T:F::::I:::T:QQ::::::I:::::::::::FDG::R:L::::::: Hmu0905 ES::::Y:::E:T::::::L:::N:QQ:::::::::S::V:::L:::GT:E:LK:::::A consensus LVPHPGFLNVSLGREDIRAHRDRIDAVETYNPKHLPHHNRRARSIAAETDLPGFGSSYAH #oth 14111513221245642424436221312214164454352455345334423.3..... HQ1240A :I:::E:M:::FSES::Q:NA:AV::I:V::F:SPGWA:T:SI:LIT::NHQP::::::: VNG0370 --------------------------------------------------M:A::::::: hla2396 :A:::::ATI::T:PE:A::ST:::::::::T:L:::Q:A:T:R::EA::Q::::::::: Hut0126 :T:::S:::::::PAL:EEY:GV:::I::C:::FW:::E:::E:::TAA:::T::::::: NP0818A :A:::E:AT:::EAH:::::::::H:::V:::::FAT::E:::EL:::FE::A::::::: HVO_0721 :::::T::T:::TA::VA:R::D::::::::T:A::RD:::G:D::R::G::::A::::: Hbo0815 :::::D:::::::::AV:::A:E:H:I::::G:LFAGQ::PG:EFS::F:I::::::::: rrnAC0696 :::::::::::::LD::E:YD:I:::L:V::::Q:S::RD::Q:FTS::GHEP:V::::: Hmu0905 ::::::::::::T::E::::::::::::V:::::W:::::::KAL:SDFGIEP:T::::: consensus LRGTVGEAWTEFDRDIDSAADLVAALREGVPRRVFHRDGLSHRLRRAAEFAHLGYENSWG #oth 12111.11112124422333312311133221425124.341542442.24..33..1.3 HQ1240A :P:S::RV::T::CA:::E::::E::KS::S:::Y:ER::RYTAHEL:::V::V:::::K VNG0370 :A:::::V::TI:TT:T:GSE:T::::D::S:T:D:DT::::YRQ:I::KL::::::T:E hla2396 :P:::::::::::G:Y:GVDGV:D:F::AR::T:V::G:IG:Q::GLV:::::A:::T:E Hut0126 :PR::::V::T:E:E::D:::::ETF:A:::GDPA::T::T:YGQ::I::::::W::::K NP0818A :P:::::V::G:::RFET:DE:::::::::::G:Y::::PR::::CM:::G::F:::::: HVO_0721 ::::::::::::::::::E::::::::::AE:::VR:T:V::GF:G:::::::::::::: Hbo0815 :::SI:::::::::E:E::E:::::::::A::::M::S:IG::::S:I::::::F::::: rrnAC0696 V:::::::YVT:TKAFE:V:G:S:::KDD:E:SL::::::::D::::V:W::::L::T:: Hmu0905 V::::::::V:::::::DG:A::R:::AEA::::::::::A::::CGV::C::::::::S consensus KLDRLFLSGMEPTHPDHIAYDGRFDDVSVY---------- #oth .3..33.1.3.1.1.622..2.211.131.1111111111 HQ1240A :::::::::::::::Q::::::KY:::AE::::::::::: VNG0370 ::::VV:::::R:::RQV::::::::IA:::::::::::: hla2396 ::::Q::::D:::L:SNV::E:::N:::::SGTLSDYRPK Hut0126 :I::IV:::R:::::EQP::E::::::::::::::::::: NP0818A :I:::::::T:::::::::::::::::::::::::::::: HVO_0721 :I:::L:::::::::::::::::::::::::::::::::: Hbo0815 :::::::::::::::G::::::D::::RE::::::::::: rrnAC0696 :F:::M:Q:T:::::::V::::::N::K:::::::::::: Hmu0905 :V:::L:Q:T:::::N:V::G::::::K::::::::::::