|
Pairwise sequence scores | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
Consensus score | 1095 | HQ2865A | Hut0404 | hla2001 | HVO_2415 | Hbo2116 | NP4776A | Hmu1986 | VNG1608 | rrnAC1502 |
769 | HQ2865A | 1620 | 594 | 619 | 706 | 699 | 604 | 673 | 616 | 659 |
780 | Hut0404 | 594 | 1092 | 688 | 694 | 634 | 697 | 683 | 668 | 706 |
802 | hla2001 | 619 | 688 | 1203 | 740 | 801 | 607 | 684 | 714 | 696 |
890 | HVO_2415 | 706 | 694 | 740 | 1163 | 839 | 659 | 726 | 710 | 702 |
871 | Hbo2116 | 699 | 634 | 801 | 839 | 1320 | 604 | 705 | 742 | 715 |
759 | NP4776A | 604 | 697 | 607 | 659 | 604 | 1055 | 724 | 646 | 724 |
840 | Hmu1986 | 673 | 683 | 684 | 726 | 705 | 724 | 1113 | 713 | 753 |
806 | VNG1608 | 616 | 668 | 714 | 710 | 742 | 646 | 713 | 1404 | 763 |
806 | rrnAC1502 | 659 | 706 | 696 | 702 | 715 | 724 | 753 | 763 | 1078 |
272 symbols consensus -----------------------------------MDLLRRLR----------------D #oth 11111111111111111111111111111111111.434334521111111111111241 HQ2865A ::::::::::::::::::::::::::::::::::::SI::::Y::::::::::::::::- Hut0404 ::::::::::::::::::::::::::::::::::::S::G:F:::::::::::::::::- hla2001 ::::::::::::::::::::::::::::::::::::ESS:A--::::::::::::::::- HVO_2415 ::::::::::::::::::::::::::::::::::::::::::V::::::::::::::GP: Hbo2116 :::::::::::::::::::::::::::::::::::::RA:TDVSDDAATDLASSDDDAP: NP4776A ::::::::::::::::::::::::::::::::::::G:FD:::::::::::::::::::- Hmu1986 ::::::::::::::::::::::::::::::::::::K:VS::LG:::::::::::::GG: VNG1608 MPKLILPVAASRSPTPNGRAGSFRHALGRGPPSGR::R::E:::::::::::::::::A: rrnAC1502 ::::::::::::::::::::::::::::::::::::K::::IF:::::::::::::::E: consensus DDSERRVGLFVDGPNVLRDEFDVDLDDVRAAAEEEG-RLAATRLYLDEHATPGLIQAAEA #oth 555462.121......1.3.......12.431456.132432.1.1.11.221....1.1 HQ2865A EQ:N:S::::::::::::E::::::::::T:::QF:::P:IR::::::::PS:::::::S Hut0404 G:RADG:::Y::::::::E::::::::L::I:T:Y:::IG:A:::::::::::::::G:: hla2001 ::DPVG:A::::::::::E::::::::::I:::A:::Q:VT::::::::::::::::::: HVO_2415 GLPSG::A:::::::::::::::::::I:::GRSL:GQ:S:A:::::::::::::::::: Hbo2116 :AD::::A:::::::::::::::::::::E::A:I:::PT:::::::::::::::::::: NP4776A --G:T:::I:::::::F:A:::::::EL::L:GD:::TI:VA:V:V::N:SG:::::::: Hmu1986 :A::P:::V:::::::::S::::::::::EE::NW:::::I::::V:::::::::::::: VNG1608 RETPGG:A:::::::::::::::::::::EI:G:V::P::V:::::::::::P::::G:: rrnAC1502 K::PQ:::::::::::::S:::::::E::DI:A:Y::P::V::::V:QN:S::::::::: consensus RGFEVVVTSGDVDVKLAVDATRAAVEDRADVLAVASRDTDFKPALETANARGLRTVAIAP #oth ..12.22..1....1.1..2253233343232111...1....13.51353143.211.. HQ2865A :::::I:::T::::R:S::L:K:::T:T::II:IV:::A:::::I:A::SHDR:::V::: Hut0404 :::A::T:::::::::::::::::S:A:IET:VI::::::::::::V:AD::C::::::: hla2001 ::::::::::::::::::::A:F:A:G:MST::I:::::::::VV:I::SY:I::L:::: HVO_2415 :::::::::::::::::::L::Y::::::::I::::::::::::::::::Y::::::::: Hbo2116 ::::::I:::::::R::::I:QF:::G::::I::::::::::::I:::::Y::::F:::: NP4776A ::::::T:::::::::::::VE:::DEQV:TVV:V::::::::V::::AK:::H:::V:: Hmu1986 :::::::::::::::::::::A:GAD:AI:L::IV::::::::V::SVGE::IE:L:::: VNG1608 ::YD:R:::::::::::::::ELVLD:GV::::::::::::::VF:Q:ER::V::L:::: rrnAC1502 :::::RT:::::::R::::::N:::AGQI:::::::::::::::::V:ARE:VK:::::: consensus GEHGRSDALRNAATDAVTLEED-------------------------------------- #oth .33......2.1154352.33254333333223222222111111111111111111111 HQ2865A :VN::::::::::DTQI::G::NQEKNQSKDAHGVTANVMAHQENQTINEKIKSHANVDA Hut0404 :::::::::S:T:HESHS::G-:::::::::::::::::::::::::::::::::::::: hla2001 ::F:::::::::TN:S:::DG:RNGDGGNDDDETAASAE::::::::::::::::::::: HVO_2415 :SY::::::Q::::H:M::D:SAADDN::::::::::::::::::::::::::::::::: Hbo2116 ::F::::::::::::SA::GD:DEGPTMVGYDQ::::::::::::::::::::::::::: NP4776A :T:::::::::::H:EI:::--:::::::::::::::::::::::::::::::::::::: Hmu1986 :::::::::::::QN:T::::-:::::::::::::::::::::::::::::::::::::: VNG1608 :::::::::::::::::V:GG:E::::::::::::::::::::::::::::::::::::: rrnAC1502 ::Y::::::::::E:::::---:::::::::::::::::::::::::::::::::::::: consensus -------------------------------- #oth 11111111111111111111111111111111 HQ2865A NVDADTDTGTDPNSNSNSETAGDAPTFVGYDN Hut0404 :::::::::::::::::::::::::::::::: hla2001 :::::::::::::::::::::::::::::::: HVO_2415 :::::::::::::::::::::::::::::::: Hbo2116 :::::::::::::::::::::::::::::::: NP4776A :::::::::::::::::::::::::::::::: Hmu1986 :::::::::::::::::::::::::::::::: VNG1608 :::::::::::::::::::::::::::::::: rrnAC1502 ::::::::::::::::::::::::::::::::