[C] (NuoJ) COG0839 NADH:ubiquinone oxidoreductase subunit 6 (chain J) 9 genomes BUD0599 9 proteins a Hsa Halobacterium sp. NRC-1 b Hma Haloarcula marismortui f Hvo Haloferax volcanii g Hbo Halogeometricum borinquense h Hmu Halomicrobium mukohataei i Hut Halorhabdus utahensis j Hla Halorubrum lacusprofundi q Nph Natronomonas pharaonis x Hwa Haloquadratum walsbyi VNG0642 rrnAC1453 HVO_0984 Hbo0457 Hmu1944 Hut1386 hla2594 NP2306A HQ1644A

Pairwise sequence scores
Consensus score	747	hla2594	VNG0642	Hut1386	NP2306A	rrnAC1453	Hmu1944	HQ1644A	HVO_0984	Hbo0457
372	hla2594	850	217	293	278	228	324	315	236	236
318	VNG0642	217	545	260	226	253	208	219	266	252
445	Hut1386	293	260	752	387	339	357	331	301	347
429	NP2306A	278	226	387	672	321	329	364	341	329
436	rrnAC1453	228	253	339	321	947	412	337	415	398
481	Hmu1944	324	208	357	329	412	785	388	348	390
545	HQ1644A	315	219	331	364	337	388	877	554	562
565	HVO_0984	236	266	301	341	415	348	554	891	645
564	Hbo0457	236	252	347	329	398	390	562	645	904

138 symbols
consensus       MTTRPRLKLGSHLVPGLAAVALFAVMAAVFLGASFPEP-AGFPADASITASIGYAMFNLA
#oth            13232526444434322223311431322122131253121.2213311321.1211125
hla2594         -MSNDDSRSRGR:::AV:VGL:::I::LTV:S:D:G:V::A:::::::VHN::::L:::S
VNG0642         -------------------------::V::V::G:ESAT::::::V:V:::L::VLMD:N
Hut1386         -VS::::ATDLRASH:V::I:::::L::::VT:N:::A::::E::L:::EG::::L:DM:
NP2306A         :::::::YR::K:-A:VL::G:::FL:::::T:G:GTS:GA::EG-:V:E:::::::D:P
rrnAC1453       :::K:E:QTEGSF:A::::I:::V:LG:::M:V:::A:::::GEG:A::K:L:A:L:DI:
Hmu1944         -MS::Q:HT:TS:W:::::::::G:L::A:::::L:::::::G:::Q:VK:::A::::ID
HQ1644A         :::::K:::::::L:::::IG::I::T:A::S::::Q::Q::::::N::::::::::::N
HVO_0984        :::K:Q:::::::::::::::::V:::V::::::::N::Q:::EG:N:::::::S::::G
Hbo0457         :::::::::::::::::::::::V::V:A:VT:::::::Q::GG:VN::::::::::::G

consensus       G------GA--VASEGFLVAFEIIAVVLDAALDGAIMLARRED--S---------D-G--
#oth            53221211431332111.12.311122.11.12.124..322643464333344322234
hla2594         EYEL::::S:::P:::::A::L:A::A::V:V::::Y::K::KDG:IVSAMSTVLTD:::
VNG0642         :::::::T:LAE:TP:::A:::::D:::V:::A::VF::N:--::-:::::::::-:-::
Hut1386         -:::::::QSALVT:::::S:VL:::::::::::::L:::D::GSVLS:::::::-:-::
NP2306A         ::::::::D::ID::::::S:IL::L:::::::::::::K---::-:::::::::-:-::
rrnAC1453       PSAIMGE:ETA:PG::::::::::DI::V:::V::V::::::VAGESVTLGVETT:DDDM
Hmu1944         PTAIMDE:::::P:::::AL:L:::::::::::::L:::E:DE::-:::::::::-:-::
HQ1644A         L:::::::D::::G:S::A::I:::LT::V::::S:H:::::YSD:DTS:::VIT:G:RK
HVO_0984        F:::::::S:::DG:SM:::::::DL::V:::A::VL::::::::TTGQMRTILT:G:RE
Hbo0457         F:::::::E::::::S::::::::DI::V:::V::V::::::TGD:AGQ:::VLA:G:QR

consensus       ----------D-EGGDN-
#oth            22333211113771.153
hla2594         ::::::::::GR:::ERQ
VNG0642         ::::::::::SSQ:::Q:
Hut1386         ::::::::::GND:::Q:
NP2306A         ::::::::::-:-::EE:
rrnAC1453       AVAAD:::::GGP:::DS
Hmu1944         :::::::::::HS::ESR
HQ1644A         LKNHVF::::-:NE::D:
HVO_0984        LKQTLF:::::D:E::::
Hbo0457         LKQTLTGTRD:ETE:E::