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9 genomes BUD0696 9 proteins
a Hsa
Halobacterium
sp. NRC-1		 b Hma
Haloarcula
marismortui		 f Hvo
Haloferax
volcanii		 g Hbo
Halogeometricum
borinquense		 h Hmu
Halomicrobium
mukohataei		 i Hut
Halorhabdus
utahensis		 j Hla
Halorubrum
lacusprofundi		 q Nph
Natronomonas
pharaonis		 x Hwa
Haloquadratum
walsbyi

VNG1989

rrnAC3212

HVO_1973

Hbo1841

Hmu2553

Hut0343

hla1290

NP4994A

HQ3099A

Pairwise sequence scores
Consensus score1151 HQ3099A VNG1989 HVO_1973 Hbo1841 NP4994A hla1290 Hut0343 rrnAC3212 Hmu2553
626HQ3099A 1196 379 565 565 516 518 488 504 480
680VNG1989 379 1153 568 578 554 611 586 590 567
862HVO_1973 565 568 1233 822 699 698 633 592 674
843Hbo1841 565 578 822 1270 707 730 624 638 612
857NP4994A 516 554 699 707 1146 758 634 670 620
820hla1290 518 611 698 730 758 1149 649 622 608
764Hut0343 488 586 633 624 634 649 1153 624 681
771rrnAC3212 504 590 592 638 670 622 624 1119 682
776Hmu2553 480 567 674 612 620 608 681 682 1108 

174 symbols
consensus       -----------------MDEK-EGTFLVTAADEDSAVLKDVEDGQVHTLSDNPGVEADDV
#oth            1111122222333224456432321.2.132244112.21.6231132.23211354422
HQ3099A         ::::::::::MPESADANPTRHDS::::::T:AS:T::R:::S::IYS:E:AVDADRLSI
VNG1989         ::::::::::::::MTDARS::TA::F:SD:S::::I:T::S:A::::::E:::LS:G::
HVO_1973        :::::MTESESDTEAEAES:R:T::::::::::E:::::::HS::::A::S::::SE:EA
Hbo1841         MGTKPGKGLVAYSSAMTE::RV:::::::::::::::::N::S:::::::S:::::RH:A
NP4994A         ::::::::::::::::::NAQ:::C::::H:E:A:::::::DR::::::A::::::VR::
hla1290         ::::::::::::::::MT:::::S:::::HVES::::::::H::::::::S:::LTV::A
Hut0343         ::::::::::::::::::S:::T:::V::HV:GE::::T::T:SH:::::AH:DFQT:::
rrnAC3212       ::::::::::::::::::TAI::::::::N::DG::T:RN:A:S::L::::::::::GE:
Hmu2553         :::::::::::::::::--M::SS::::::::DET:T:R::V:Q::V:::E:::LA::E:

consensus       IEGTVAPDPPMEVTYQLVEIEERRTIPIERSPEPPTTNARDIAADQPDGELTREERAGEG
#oth            22111322..12.313233245424221231413..543232.12335.132241...4.
HQ3099A         :D:::ESK::LH:V:E:T::TAT::VD::T:I::::A:TKQ:::N:GA::I::KP:::A:
VNG1989         LDA:IT:::::H:::SVASVA:HTQ::VTV:D:T::P::::L:::L:R:::ATA::::V:
HVO_1973        VR:::::::::N:SW::::V:S:W:VSV:::T:S::::S::::::N:::::V::::::T:
Hbo1841         V::V:::::::N:::::I:V:SKWGLS::V:E:S::ADS::::::::V:D:::K::::I:
NP4994A         :::::::E:::::A::::D::T::QLS::E::::::QQE:AM::E::T::MAT:::::T:
hla1290         L:A:::::::::::::I:::M:Q:ALS:AE:E::::VHE:EL:TETET:::A::::::V:
Hut0343         ::A:IRAE::::::WEVAA:HD:::V:::::::T::KQ:::::T::AV::V::R::::::
rrnAC3212       V::::E:E:::::::TVT:VA::::::V:TVDLA:::QTTE:::E:AP::::TV::::::
Hmu2553         ::A::E:E::L::A::I::L:RQWE::V:::::S:::L::::::E:A:::I:KR::::::

consensus       EIHVLTVPEDNTEQAVDDVLDD-EATLSRAARLGVNRVEIRSAPGVVSVRYLP-
#oth            .1.11111245334.14.132.325133...11222.111.2431121...1.2
HQ3099A         :::II::::K:STE::A:I:::KVTLCE:::::EG::I:::::::::A:::M::
VNG1989         :::::S:GA::VSD:::::VA::DQ:V:::::I:I::::V:AGADFI:::::::
HVO_1973        :::::S::D:M:::::::I:::R:GL:::::::D::::::::QS:::A:::M::
Hbo1841         ::::I::::GE:::::S::AE:E:N:::::::::::::::::DS:::A:::M::
NP4994A         :::::S::::Q::P::E::::::::::V:::K:::E::::::E:::::::::::
hla1290         ::::::P::ED:AD::S::I::R::::::::::::::::V::E::::::::M::
Hut0343         :V::::::AEQ:::::A::I:::DE:VR:::::::D:::::ADD::L:::::::
rrnAC3212       :V::::::::E:AE:AT::VE::::::::::::::D:::V:T:A:::::::::D
Hmu2553         :V::::::D--A:A:A:::::::D::RE:::::::D::SV:AGD:::::::::N