|
Pairwise sequence scores | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
Consensus score | 2117 | hla0833 | HQ2843A | HVO_2565 | Hbo2288 | VNG1688 | NP4852A | rrnAC1612 | Hmu2039 | Hut3008 |
1393 | hla0833 | 2152 | 1243 | 1257 | 1267 | 1219 | 1198 | 1241 | 1260 | 1189 |
1511 | HQ2843A | 1243 | 2258 | 1441 | 1559 | 1298 | 1269 | 1350 | 1318 | 1316 |
1613 | HVO_2565 | 1257 | 1441 | 2124 | 1666 | 1416 | 1326 | 1380 | 1367 | 1378 |
1657 | Hbo2288 | 1267 | 1559 | 1666 | 2084 | 1441 | 1354 | 1429 | 1406 | 1440 |
1618 | VNG1688 | 1219 | 1298 | 1416 | 1441 | 2117 | 1386 | 1430 | 1413 | 1446 |
1609 | NP4852A | 1198 | 1269 | 1326 | 1354 | 1386 | 2100 | 1422 | 1506 | 1529 |
1730 | rrnAC1612 | 1241 | 1350 | 1380 | 1429 | 1430 | 1422 | 2118 | 1699 | 1551 |
1723 | Hmu2039 | 1260 | 1318 | 1367 | 1406 | 1413 | 1506 | 1699 | 2127 | 1539 |
1691 | Hut3008 | 1189 | 1316 | 1378 | 1440 | 1446 | 1529 | 1551 | 1539 | 2275 |
324 symbols consensus ----MTLSVLVPSSLVREAEDKREATRKLGYVARAAAVFRVDRLVVFPDRDGE-RRWGDG #oth 11111222211...13.....3......1..1..1.2.1.2121211..23.21233122 hla0833 MRTEDG:TIC::::V::::::A::::::::::::::::::A:::::::::E:::::R:GE HQ2843A ::::::::::I:::V::::::::::::::::I::S:T:::::H:I:::::G:::::L:GE HVO_2565 :::::K:::::::::::::::Q::::::::::::::::::ANE::::::E::::NN::GE Hbo2288 ::::::::::::::::::::::::::::::::::::T:::A:::I:::::E:::::::RK VNG1688 ::::::R:::::::::::::::::::::::::::::::::I::V:::::E:::::Q::G: NP4852A ::::::R::::::::T::::::::::::::::::::T:::::::::Y:::::DDG:F::: rrnAC1612 ::::::T::::::::A:::::R::::::::::::::::Y:::::T:Y::P::A:GK:E:: Hmu2039 ::::::T::::::::::::::R::::::::::::::V:::::::TI:::PA:A:GK:E:: Hut3008 :::::::NA::::::C::::::::::::I:::::::T:::::::I:Y::P::A:G::::: consensus FVETVLRYAATPPYLRKEVWGRRDELEYVGVLPPLRVRSQTGSGSDGSGSLRQGIVTEVG #oth 1.2...2..1..12...24124.1..311.1...111323.113132121121.1..1.. hla0833 Y:R:::G::::::E:::DL::E::::R::::::::::PWR:::TPS:EE:KT::L::::: HQ2843A :::::::::::::H:::KI::::::::::::::::::S:T:::E:TD::::T:::::::: HVO_2565 :::::::::::::::::::::K::::R:A:I:::VL:A:T:ADD::E:PA::E::::::: Hbo2288 :::::::::V:::::::::::H:::::::::::::L:S:T:::E::D::::Q:::::::: VNG1688 ::::::::::::::::::AFDT::::A:A:::::::LS:W:::D:S:::::::::::Q:: NP4852A ::S:::E:::::A:::::::D::G::::A:I::::::::::::::::::::::::::::: rrnAC1612 :::::::::::::H::::M::K:::::::::::::::::::::::E:::::::::::::: Hmu2039 :::::::::::::::::::::K:::::::::::::::::::::::E:::::::::::::: Hut3008 ::::::::::::::::::A:E:::::GC:::::::::AT:::::::D::::::::::::: consensus PDGRVRVNCGM-QHPISLPVPPDMEV-EEGERVTIRVSSREPVRAKIVDEPLPGFDVDRA #oth 211.....12111..1..52.43252152.1..11.1...1....11115143.14.343 hla0833 :E::::::SPLRE:::::L::SG:::::Q::::::::::::::::R:TGK:EE::Q:VE: HQ2843A ::D::::::EL::::V::H::ESVS::R::T::A::I::::::::R:::T::S::::SCL HVO_2565 ::D:::::::::::::::F:::G:DL:T:::::AV:I::::::::R:::::::::::S:M Hbo2288 ::::::::::::::::::YT:S::M::K:::::A::I::::::::R:::::V:::::S:M VNG1688 SE::::::::::::::::HE::G:A::S::::::::::::R:::::L::D:::::S:E:T NP4852A ::::::::::::::::::::::S::::GK:::::::::::::::::L:::SP:::A::C: rrnAC1612 A::::::::::::::::::::A::D:::Q:::::V:::::R:::::L::A:TT::::VA: Hmu2039 A:::::::::L::::::::::SA:::PG::::::V:::::R:::::L:::::T:YV::T: Hut3008 S:::::::::::::::::A::G:RTI:K::::::V:I:::R::::::::Q:P::YQ:::: consensus DLDAALERADAGVRIATSRHGEPLSVDRLGDLAER-DAAGGMTVAFGAPERGLPAILG-- #oth 32531.52321.321.2..2.2312263.3424423562424.11..1.1....511111 hla0833 ::SE::--:GD:LAV:::::::E:::S::::IVSDARK:::Y:::::S::::::EM:::: HQ2843A ::VD:::H:A::ITV::::::DTVTTG::PE::A::VNRA:A:I:::::G::::V:::DD HVO_2565 ::TE::G:P::::::::::Y::::::PT::::TA:ITD::::::V::S:G::::DM:::: Hbo2288 ::EE::G:::::IT:::::F::S:T:PK:A::SP::IERE:A::V::S:G::::D::::: VNG1688 G:GD::D:S:::::::::::::::::AS::GYR:::I:RD:V::::::::::::PM:::: NP4852A TIE:S:A:P:::::::A:::::T::::::DGIVG::TT:N:F::::::::::::E::::: rrnAC1612 ::::::S:D:::LT::S::Y:::VTST:::Q::::R::E:::::::::::::::S::D:: Hmu2039 :V:T::::S:::FA::A:::::E:G:::::Q:V::R:D::H:::::::::::::::F::: Hut3008 N:::::S:P:::::::A::::QS:TTE:::R::GTIAS::D::::::::::::::::::: consensus -------------VSPDAVDP---------------------DEPSDGP-GFDLWLNTIP #oth 111111111111144144376323111111111122122222353524231..1....1. hla0833 :::::::::::::L:::GIRAAVAD:::::::::::::::::GRSVEPDP:::::::::: HQ2843A NAPDSQTQTDEKT:::AN::TT::::::::::::GDNTASEVV::NVD:::::::::::: HVO_2565 :::::::::::::MP:ED:AD:::::::::::::::::::::V:::V::::::::::::: Hbo2288 :::::::::::::IDAEE:T-:::::::::::::::::::::V::::::::::::::::: VNG1688 :::::::::::::::A:::NESVT:::::::::::::::::::SSA:A:AR::A:::::: NP4852A :::::::::::::CE:REE--:::::::::::::::::::::AIGDEPEAR:::::::V: rrnAC1612 ::::::::::::::A::::GG::::::::::::::::::::::QT::E:E::::::::V: Hmu2039 :::::::::::::LD::DAV:::::::::::::::::::::::GTG:DDA::::::::V: Hut3008 ::::::::::::::E:G::::STVDELAAAVDAAERNDETVTGSG:::::R:::::::V: consensus NQGSEVVRTEEAMFATLASLTLTE #oth 4.1.........2111.23..111 hla0833 A:A:::::::::L:V::G:::::: HQ2843A Q::::::::::::::S::L::I:: HVO_2565 R::::::::::::::S:::::::: Hbo2288 R::::::::::::::S:::::::: VNG1688 D:::::::::::VL:::G:::::: NP4852A ::::::::::::L:::::P:::E- rrnAC1612 ::::::::::::L::S:TC::::: Hmu2039 :::::::::::::::::::::::: Hut3008 :::::::::::::::::GP:::::