| |||||||||||||||||||||||||||||||
| Pairwise sequence scores | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Consensus score | 1552 | rrnAC2136 | VNG2313 | rrnAC1664 | NP2886A | hla2640 | HVO_1884 | Hbo1763 | Hut0477 | Hbo2404 | HVO_2680 | rrnAC0276 | Hmu1407 |
| 705 | rrnAC2136 | 3004 | 529 | 528 | 530 | 481 | 527 | 523 | 547 | 606 | 585 | 554 | 540 |
| 880 | VNG2313 | 529 | 1454 | 907 | 951 | 906 | 524 | 565 | 637 | 693 | 695 | 717 | 686 |
| 1033 | rrnAC1664 | 528 | 907 | 1585 | 1135 | 1118 | 628 | 645 | 613 | 689 | 713 | 716 | 753 |
| 997 | NP2886A | 530 | 951 | 1135 | 1574 | 1146 | 639 | 634 | 654 | 716 | 704 | 702 | 704 |
| 1008 | hla2640 | 481 | 906 | 1118 | 1146 | 1625 | 594 | 616 | 629 | 702 | 706 | 710 | 748 |
| 827 | HVO_1884 | 527 | 524 | 628 | 639 | 594 | 1523 | 919 | 637 | 711 | 749 | 723 | 723 |
| 890 | Hbo1763 | 523 | 565 | 645 | 634 | 616 | 919 | 1453 | 662 | 768 | 775 | 755 | 753 |
| 940 | Hut0477 | 547 | 637 | 613 | 654 | 629 | 637 | 662 | 1683 | 823 | 955 | 949 | 987 |
| 964 | Hbo2404 | 606 | 693 | 689 | 716 | 702 | 711 | 768 | 823 | 1711 | 959 | 862 | 935 |
| 1111 | HVO_2680 | 585 | 695 | 713 | 704 | 706 | 749 | 775 | 955 | 959 | 1639 | 1063 | 1125 |
| 1091 | rrnAC0276 | 554 | 717 | 716 | 702 | 710 | 723 | 755 | 949 | 862 | 1063 | 1620 | 1181 |
| 1110 | Hmu1407 | 540 | 686 | 753 | 704 | 748 | 723 | 753 | 987 | 935 | 1125 | 1181 | 1644 |
431 symbols consensus --------------RSLLRPST-------------------------------------- #oth 111111111235443444554511111111111111111111111111111111111111 rrnAC2136 ::::::::::MGSLQ::IG:HRLDALGAWAVTGILIGGVGRFAAGGHFDWAVLTALLVAI VNG2313 ::::::::::::::--------:::::::::::::::::::::::::::::::::::::: rrnAC1664 ::::::::::::::MR:P:::M:::::::::::::::::::::::::::::::::::::: NP2886A ::::::::::::::MK:P:::V:::::::::::::::::::::::::::::::::::::: hla2640 :::::::::MSFARM::P:::V:::::::::::::::::::::::::::::::::::::: HVO_1884 ::::::::::::::----MA:R:::::::::::::::::::::::::::::::::::::: Hbo1763 ::::::::::::::--------:::::::::::::::::::::::::::::::::::::: Hut0477 :::::::::::MSL::R::L:::::::::::::::::::::::::::::::::::::::: Hbo2404 MKGRDIFRVTNHRL:DV:HITV:::::::::::::::::::::::::::::::::::::: HVO_2680 :::::::::::VKI::H::IDE:::::::::::::::::::::::::::::::::::::: rrnAC0276 :::::::::::MRV:DRFSI:::::::::::::::::::::::::::::::::::::::: Hmu1407 :::::::::::MRL:DRIGV:::::::::::::::::::::::::::::::::::::::: consensus ------------------------------------------------------------ #oth 111111111111111111111111111111111111111111111111111111111111 rrnAC2136 AVTVPFATRDLETTVPAELLGLVAVPVLVRAVGGFPQVTPFLVIAGVALLLAVVLDACTS VNG2313 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: rrnAC1664 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP2886A :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: hla2640 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: HVO_1884 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: Hbo1763 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: Hut0477 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: Hbo2404 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: HVO_2680 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: rrnAC0276 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: Hmu1407 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: consensus ------------------------------------------------------------ #oth 111111111111111111111111111111111111111111111111111111111111 rrnAC2136 LTMTPRFATVFVVIVTMAVAGVWAVGIYAADTLLGTAFLDGQTELMWDLVTAAAAGLVAG VNG2313 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: rrnAC1664 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP2886A :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: hla2640 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: HVO_1884 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: Hbo1763 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: Hut0477 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: Hbo2404 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: HVO_2680 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: rrnAC0276 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: Hmu1407 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: consensus -------------------------------------RRQRRLTRAMQLVLVGLVAFGLE #oth 111111111111111111111111111111111111155334343523431542344125 rrnAC2136 VVFELYFERSTRIARLRVSGADASEFDQPDASLPGNGTHH:IAA::L:A::GV:S::A:A VNG2313 :::::::::::::::::::::::::::::::::::::---------::A::::M:::::L rrnAC1664 ::::::::::::::::::::::::::::::::::::::N:::T::::::::L:::GY:IL NP2886A ::::::::::::::::::::::::::::::::::::::N:::::AG:R:L:A:I:VY::V hla2640 :::::::::::::::::::::::::::::::::::::AN::::::G::IL::AI:VY:VV HVO_1884 ::::::::::::::::::::::::::::::::::::::FE:LAG:VI:AAILCILLV:IY Hbo1763 :::::::::::::::::::::::::::::::::::::---------:R:AIA:ILG::IA Hut0477 :::::::::::::::::::::::::::::::::::::Y::QQ::KV:EF::T::FFI::: Hbo2404 :::::::::::::::::::::::::::::::::::::::::QA:::::IL:GLM:VA::L HVO_2680 ::::::::::::::::::::::::::::::::::::::::SQ:S::::V::::::FI::D rrnAC0276 :::::::::::::::::::::::::::::::::::::AT:Q::S:SLS:A:I::F:V:I: Hmu1407 :::::::::::::::::::::::::::::::::::::PT::::::L:::S:I:MLFV:I: consensus RGNPGIIVNAGVGLLVTFLPALLERDYGIPLDPGLTLWITSAVFLHALGTVG-------F #oth 72363442.3444252232.2432.226331325.31.225.231.33.34231143422 rrnAC2136 Q::VTLF::S:GP:AI::::::FR:E::YGMNT::V::::V:ST:::A:AFE:::::::L VNG2313 D::SKAV::GT:T::I:LV:GA:::N::L:M::W:V::::A:A:::S::SS::::::::L rrnAC1664 A:Q:KP:T:G:I:::::::::MMR:N:NLA:::W:A::::T:::::T::SA::::::::L NP2886A Y:Q:KA:T:GLLS:AI::V::VM::N:::::::W:G::::L:::::TM:SA::::::::L hla2640 A:E:KA:T:G:L::F:::V:::A::N:D:::::W:GV:::::::::T::SAW:::::::: HVO_1884 TR:LSVV:::VLA:GA:::::V:R::WQ:R:H:L:G::LAL::L:::V:ML::::::::P Hbo1763 KL:AS:TI::AAA:A::Y:::::S::W::R:S:S::::V:T::L:::V:M:::::::::P Hut0477 :RSV::SI::AI::I:LQI:P::::::SV:M::R::::::T:::::S:::::VPGGSG:: Hbo2404 NR:G:VF:::L::FV:::::GI::::H:::M:A:::::::::::::G::::ELP:IVGSP HVO_2680 :::L::V:::L:::G::Y:::I:::::R::M:A::::::S::A:::::::::FPGSETS: rrnAC0276 :::V:::::S::AI:::Q:::::::::::A:::A::::::::A:F:::::::LPGSEEN: Hmu1407 ::ST:::::T:I::::AQ:::V:::::E::::A:::::::G::W::::::::LPGAEAN: consensus YASIWWWDHLTHALSASLVAAAGYTTARAVDEHSDAIHIPRRFMFVFILLFVLAFGVFWE #oth .672511.121.12.1221.12..343.321514451631412411122311112..4.. rrnAC2136 :EAFG:Y:S:A::V::::::GV::AI::::ER::R:VDFN:E:RAT:VV:::::V::G:: VNG2313 :V::P::::V::::::::::G::::V:::::C:H:D:TV::EIA::Y:FVV::::::V:: rrnAC1664 :GQ:G::::::::M::::I::F::::::TI:L:N::::::::VF::Y:FVV::S:::I:: NP2886A :GHFE::::::::M::::::G::::F:::::L:N:R:::::::F::YV:VV::::::V:: hla2640 ::E:V:::::::::::T:::G::::AL:G::L:::::R::T::A::::FVV::::::V:: HVO_1884 :NY:D::::V::T:::TV:::V::V:::::::YTE:V:L:D:::::YV:::T::A::::: Hbo1763 :SEV::Y::V::T:::M::::V::A::::::KY::SVFL:P:::::Y::T:T:::::L:: Hut0477 :Q::PGY::::::::::V::G:::A:I::L:::WNDV:L:D::V:::::M:::::::::: Hbo2404 ::::P::::::::::::I:::V::S::::I:L:T::VDL:P::::::::T:T:::::L:: HVO_2680 ::GV:::::::::::S:V::::::A:V::::::TAD:YL:P::::::::::::::::::: rrnAC0276 :V:::::::F:::::S:V:::V::::V::L:::T:E:S::S::::::L::::M::::L:: Hmu1407 ::T::::::::::::S:I::::::::V:SL:Q:::G::::P::::::::::::::::::: consensus VIEFALDLAASATGIEMVLAQYGLDDTMLDLVFNTIGALIVAVFGTAHLSDVAETLRERL #oth 22..554651566.6542.2.2.26.136.231123.133..611244141324827563 rrnAC2136 IL:::SGGI::MV:G:A::::::TS:IVN:::::::::::::GWS:::FEGL:AR:SG:V VNG2313 LL::G::EL:T:::LA:P:::H::A:::H:FMY:SL:::V:::::Q:::TG:::VVAAWW rrnAC1664 LF:::::IV:TE::VT:P:::H:::::VR:TM::SL:::L::A::Q:::T:::::::::: NP2886A LF::G::V::D::::::P:::H:::::VR::I::SL:::A::T::Q::::G:::KIQTS: hla2640 LF::G::IV:DV::VS:P:::H:::::V:::MY:S:::::::M::Q:Y::G::::V:DG: HVO_1884 :L::GAR:::E:I:S:A::V::::S::IV::::D:V::VL::L:::PP:A:TIDSV:::: Hbo1763 :L::FAR:S:EFF:::A::V::::H::IV::M:D:V::A:::L:::ET:::LVD::H::: Hut0477 ::::TTSA::T:I:GSP::T:::IE:::K::I::::::V:::TW::VY:N:FITQ:LTV: Hbo2404 ::::MISVTSNYL::GS::T::::R:::F::L:D:A::IV:::W:SSQ::G:VAA:TA:: HVO_2680 :::::ISGV::LA:TAS::T:::::::L:::::DAV:GV::::W::::::::VGA:QR:F rrnAC0276 ::::SIT:::::::NDTI:T:F::S::::::::DA:::I:::IW:::::T::VGHVETL: Hmu1407 :::::VST::AMM:TGT::T::::G::::::::D::::VL:::W:::Y:T::VGI:S:T: consensus ERRR------- #oth 56868222111 rrnAC2136 G:LTSSE:::: VNG2313 RS:Q::::::: rrnAC1664 FVVD::::::: NP2886A TA:-::::::: hla2640 FSI:DE::::: HVO_1884 ::T:S:::::: Hbo1763 :EA:PERR::: Hut0477 GGETESEPPGE Hbo2404 G:SST:::::: HVO_2680 :TAPR:::::: rrnAC0276 N:QSQ:::::: Hmu1407 NT:SA::::::