| ||||||||||||||||||||||||||||||||||||||||
| Pairwise sequence scores | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Consensus score | 3162 | Hmu0334 | hla0708 | HQ2412A | VNG0442 | hla1948 | Hbo0058 | HVO_1488 | rrnAC0575 | Hmu1609 | hla1028 | Hut3002 |
| 1526 | Hmu0334 | 3193 | 1414 | 1410 | 1454 | 1496 | 1474 | 1500 | 1506 | 1482 | 1439 | 1541 |
| 1662 | hla0708 | 1414 | 3115 | 1563 | 1653 | 1628 | 1610 | 1643 | 1613 | 1601 | 1534 | 1540 |
| 2857 | HQ2412A | 1410 | 1563 | 3145 | 2760 | 2803 | 2847 | 2782 | 2772 | 2767 | 2429 | 2443 |
| 2913 | VNG0442 | 1454 | 1653 | 2760 | 3161 | 2796 | 2860 | 2849 | 2762 | 2780 | 2451 | 2519 |
| 2984 | hla1948 | 1496 | 1628 | 2803 | 2796 | 3489 | 2928 | 2948 | 2869 | 2900 | 2525 | 2512 |
| 3061 | Hbo0058 | 1474 | 1610 | 2847 | 2860 | 2928 | 3156 | 3014 | 2962 | 2971 | 2526 | 2585 |
| 3024 | HVO_1488 | 1500 | 1643 | 2782 | 2849 | 2948 | 3014 | 3173 | 2938 | 2970 | 2518 | 2566 |
| 2988 | rrnAC0575 | 1506 | 1613 | 2772 | 2762 | 2869 | 2962 | 2938 | 3191 | 3033 | 2508 | 2530 |
| 2990 | Hmu1609 | 1482 | 1601 | 2767 | 2780 | 2900 | 2971 | 2970 | 3033 | 3191 | 2498 | 2506 |
| 2608 | hla1028 | 1439 | 1534 | 2429 | 2451 | 2525 | 2526 | 2518 | 2508 | 2498 | 3175 | 2624 |
| 2628 | Hut3002 | 1541 | 1540 | 2443 | 2519 | 2512 | 2585 | 2566 | 2530 | 2506 | 2624 | 3182 |
471 symbols consensus ------------------------------------MSK----DYADLHDPNAEYTMREL #oth 111111111111111111111111111111111111235123321432411212222222 Hmu0334 ::::::::::::::::::::::::::::::::::::---::::M:E:FASTL:ATMWADF hla0708 ::::::::::::::::::::::::::::::::::::---::MR::S:QI:T--------- HQ2412A :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: VNG0442 ::::::::::::::::::::::::::::::::::::::E::::::::::::::::::::: hla1948 MSTPMKNSLFVQRRTEAFPPLRTPPQKNINVYPVPNE:GAMSRN:ES::::::::::::: Hbo0058 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: HVO_1488 :::::::::::::::::::::::::::::::::::::G:::::N:::::::::::::::: rrnAC0575 :::::::::::::::::::::::::::::::::::::G:ANDV::::::::::::::::: Hmu1609 :::::::::::::::::::::::::::::::::::::GN::DI::::::::::::::::: hla1028 ::::::::::::::::::::::::::::::::::::---::MV:HDK:R:::::::::D: Hut3002 :::::::::::::::::::::::::::::::::::::PI::::::TQ:S:::::::::D: consensus SAETMGVTAKRGGGRDVEITDVQTTMVDGNFPWTLVRVYTDAGVVGTGEAYWGAGVPELI #oth 2321124355.3541131..12112111..11.211211.11.11.1..2.212.12121 Hmu0334 DEQ-----PR:AD:PPG:::::::VV::::::::I:T:E:SE::T:I::C:PSP::H:V: hla0708 ----------:DPD:::Q::SLDACV:E:::E:N:IK:E:::::T:I::::R:G:::::V HQ2412A :::::::A:S::SK:::::::I::::I::::::::::::::::IT::::::::::::::: VNG0442 ::::::ADSG:PAP::L::::I:::::::::::::::::::::::::::::::::::::: hla1948 ::::::T:GS:::::::::::::::::::::::::::::::::::::::::::::::::: Hbo0058 ::::::A::::::::::::::::::::::::::::::I:::::I:::::::::::::::: HVO_1488 :::::::::::::::::::::::::::::::::::::I:::::::::::::::::::::: rrnAC0575 :::::::::::::::::::::::::::::::::::::I:::::I:::::::::::::::: Hmu1609 :::::::::::::::::::::::::::::::::::::I:::::::::::::::::::::: hla1028 :::::DI:NS:::V::A:::::::::::::Y::I:::::::::::::::S:::G:DTAI: Hut3002 :S:::::::D::-P::::::::::::::::Y::::::::::::::::::::::::::::V consensus -ERMKPFVVGENPLDIDRLYEHLVQKMSGEGSVEGVTVTAISGIEIALHDLAGKILDVPA #oth 111231221....1.11..22223122..2.234.2333.11.1.1..2.21..2.33.2 Hmu0334 TDYLR:VL:::::T:VE:::NLMRESL::R::QQ:IGTI::::V::::W:AT::L::Q:I hla0708 ::YTNR:L:::::::VE::VRYIF:E:::H:GTT:KV:::A:::::::L:A:::::GL:V HQ2412A ::::T:MII::::::::::::::I:::::::TI::::::::A:::V::::::::::Q::: VNG0442 ::::T::::::::::::::F:::::::::::::::::::::::::V::::::::V:G::: hla1948 ::::::::I::::::::::::::I:::::::::::::::::::::V::::V::::::::: Hbo0058 :::::::::::::::::::F::::::::::::::::::::::::::::::::::::EI:: HVO_1488 ::::::::I::::::::::::::::::::::::::::::::::::V:::::::::::I:: rrnAC0575 :::::::::::::::::::::::I:::::::::::::::::A:::V::::::::::E::: Hmu1609 ::::::::I::::::::::::::I:::::::::::I:::::A::::::::::::::E::: hla1028 :::::::I::::::::::::::::::::::::IS:KVIS:::::::::::A:::L::::: Hut3002 :::L:::L::::::::::::::M:::T:::::IA::WLH::::V:::::::::::::::: consensus YQLLGGKYRDEVRVYCDCHTEE---------------EADPEACADEAERVVDELGYDAL #oth ...1.1.1.14111.1.1.123111222212222212311.2.1.41.2111133.1112 Hmu0334 :::::::L:ES:A::A:::AG:::AMVESAREGQEASTY::Q:Y:RA:RGA::D-:F:IV hla0708 :::::S:::::::L:::::AG:AYAVEDGATAYAGAEAYS:::Y:A::A::T:-M:FS:: HQ2412A ::::::::::AM:::::::::A:::::::::::::::D:::::::I::::::E::::::: VNG0442 ::::::::::::::::::::AA:::::::::::::::::::::::::::::::D:::::: hla1948 ::::::::::KM:::::::::::::::::::::::::::::::::::::::::::::::: Hbo0058 ::::::::::::::::::::::::::::::::::::::::::::::::::::E::::::: HVO_1488 ::::::::::K::::::::::::::::::::::::::::::::::::::::::::::::: rrnAC0575 :::::::::::M:::::::::::::::::::::::::::::::::E::R::::::::::: Hmu1609 :::::::::::::::::::::::::::::::::::::::::D::::::R::::::::::: hla1028 :::V:::::::::::::L:::N:::::::::::::::::::Q:::A::::::ENF::::I Hut3002 ::::::::::D::::::L:::D:::::::::::::::::::Q::::::::::EN:::::I consensus KFDLDVPSGLEKDRANRHLRPGEIRHKAEIVEAVTERVKDRADVAFDCHWTFSGGSAKRL #oth .....11114.2.3211113221.21.321.2212121233111.1.1..31122111.. Hmu0334 :::::::::R:I:TLS::FD:P::E::RRV:::::DEIGHD:E::V:L::N::PET:E:: hla0708 :::::L:ADN:N:PY:GR:NNAA::E:K:::A::R:EIGYDI:L::::::DY:VE::::: HQ2412A ::::::S::::::::::::::::::::VD:::::S::::::::::::::::::::::::: VNG0442 ::::::::::::::::::::::::::::D::A::::::R::::::::::::::::::::: hla1948 :::::::::F::::::::::::::::::::::T:::::::K::::::::::::::::::: Hbo0058 :::::::::F:::::::::::::::::::::::::::::::::::::::::::::::::: HVO_1488 :::::::::H::::::::::::::::::::::K:::::::K::::::::::::::::::: rrnAC0575 ::::::::::::::::::::::::::::::::K:::E:::E:::::::::::::S:G::: Hmu1609 ::::::::::::::::::::::::::::::::K:::E:::E:::::::::::::::G::: hla1028 :::::::::H::::::::::NP::D::VD::::T::A:G:K:::::::::S:T::::::: Hut3002 :::::::::H:::S:::::SGP::E::::::R:T::::GAD:E::::::::YT::::::: consensus AAAIEEYDVWWLEDPVPPENLDVQEEVTKSTTTPIAVGENRYRVTEQRRLIENQAVDIVA #oth 1411.41.12.1..12....42113111431611222...111221412.22311..221 Hmu0334 CR:::P::LA:I:::L::::T:AMR:LKRRVDVTLLT:::::GRHGF:D:VAE::::FL: hla0708 :HEL::F:LM::::LI::::M:A:K::::A:R::V:T::::F::F:LSD::YDHG::::T HQ2412A :D:::K:::::::::::::::A:::S::D::V::::A:::::::::::::::D::::::: VNG0442 ::EL:A::::::::::::::::::AS::E::A::::::::::::::A::::::::::::: hla1948 :D:::::::::::::::::::E:::::::N:V::::::::::::::L::::::::::::: Hbo0058 :::::D:::::::::::::::A:::::::::V:::T::::::::::E:::::::::::I: HVO_1488 ::EL:D:::::::::::::::::::::::::L:::T::::::::::L::::::::::::: rrnAC0575 :E::::::::::::::::::IE:::::::::::::T::::::::::E::::::::::MI: Hmu1609 :D:::::::::::::::::::E:::::::::K:::T::::::::::E:::::::::::I: hla1028 :E:L::::::::::::::::H:::::::::::::::::::V::KHG::T:L:P::::::: Hut3002 :EE::D::::::::::::::H:::R:::Q:::::::::::V::KHG::::L:E:::::I: consensus PDLPKVGGMRETRKIADVANQYYIPVAMHNVSSPIATMASAHVGAAIPNSLAVEYHSYEL #oth ..3121..22..311.13.231.31221..13..11.2.3211.112..2212...12.1 Hmu0334 ::V::T::IA::K:::EL:ET::QALVP::IG::V::A:TV::::TV::FV:L:::AR:V hla0708 ::PAT:::LT::MR:::R:EEN:M:MSP:::C::VG:::CV:L:::T::FDLL:::AL:V HQ2412A :::::::::::::::::::::::::::::::::::::V:AT::::::::A:::::::::: VNG0442 :::::::::::::::::::::::V:::::::A::V::::::::::::::A:::::::::: hla1948 :::::::::::::::::::::::V:::::::A:::::::AT:::::::::::I::::::: Hbo0058 ::::::::::::::::::::::::::::::::::V:::::::::T::::::::::::::: HVO_1488 ::M:::::::::Q::::::::::V::::::::::V:::::::::T::::::::::::::: rrnAC0575 ::M:::::::::::V:::::::::::::::::::::::::::::::V::::::::::::: Hmu1609 ::::::::::::Q::::A::::::::::::::::::::::::::T::::::::::::::: hla1028 ::::R::::::::::::L:DM::::::::::::::G::::::::::::::::L::::::: Hut3002 ::V:R::::::::::::L:DT::::::::::G:::::::::Q:::::::A:::::::::: consensus GWWED-LVEED-VIEDGYIEIPEKPGLGLTLDMDAVEEHMVEGETLFDEA- #oth 2..311..21332.12.2131.14..1.21.1312.22.422132311221 Hmu0334 S::D:L::RDEPF:R::R:RV:DG::::VE::W::::D:RKH--------: hla0708 D::D:L::RDEPL::::R:AV::A::::IE::EAV::::LL::TDG:---: HQ2412A ::::::::::S::::::::TV::A::::V:::::T:AA:::::::::::V: VNG0442 :::S::::A::::::::S::V::R::::I::::::::::::D::::::::: hla1948 ::::::::::::::::::::V:::::I:::::::T:::::::::::::P:: Hbo0058 ::::::::::T::::::::::::::::::::::::::A::::::::::::: HVO_1488 ::::::::::T:::::::::::::::::V:::::T::::::D::::::::: rrnAC0575 :::D::::::T::::N:::::::E::::::::L::::::V:::D:V::::: Hmu1609 ::::E:::::S::::N:::::::E:::::::::::::::::D::::::P:E hla1028 :::::::::::NL::E:RM::::E:::::::NL:::G:::::::::::::: Hut3002 :::A::::::EGL::::SMA::::::::::::L::::A:K:::::V:::::