| ||||||||||||||||||||||||||||||||||||||||
| Pairwise sequence scores | |||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Consensus score | 2727 | HQ3121A | NP3064A | VNG1911 | hla0433 | HVO_2227 | Hbo1934 | Hmu2281 | rrnAC3307 | HQ3334A | VNG1776 | hla1132 | rrnAC1711 | Hmu2252 | NP4498A | HVO_2313 | Hbo2000 |
| 1675 | HQ3121A | 2727 | 1890 | 1887 | 1919 | 1953 | 2020 | 1843 | 1885 | 958 | 868 | 910 | 977 | 958 | 968 | 878 | 911 |
| 1790 | NP3064A | 1890 | 2680 | 1944 | 1942 | 1964 | 2007 | 1973 | 1948 | 957 | 876 | 953 | 1043 | 1028 | 1047 | 938 | 949 |
| 1756 | VNG1911 | 1887 | 1944 | 2665 | 2033 | 1976 | 1990 | 1959 | 1985 | 922 | 944 | 923 | 1008 | 951 | 982 | 926 | 940 |
| 1814 | hla0433 | 1919 | 1942 | 2033 | 2844 | 2086 | 2023 | 2001 | 1996 | 980 | 951 | 1003 | 1041 | 995 | 1038 | 935 | 991 |
| 1784 | HVO_2227 | 1953 | 1964 | 1976 | 2086 | 2682 | 2142 | 2041 | 2083 | 976 | 849 | 924 | 949 | 991 | 979 | 918 | 931 |
| 1837 | Hbo1934 | 2020 | 2007 | 1990 | 2023 | 2142 | 2650 | 1982 | 2076 | 951 | 905 | 971 | 1028 | 984 | 1051 | 944 | 967 |
| 1785 | Hmu2281 | 1843 | 1973 | 1959 | 2001 | 2041 | 1982 | 2676 | 2126 | 916 | 891 | 921 | 1044 | 944 | 985 | 934 | 951 |
| 1786 | rrnAC3307 | 1885 | 1948 | 1985 | 1996 | 2083 | 2076 | 2126 | 2661 | 964 | 915 | 957 | 1024 | 1015 | 997 | 965 | 979 |
| 1648 | HQ3334A | 958 | 957 | 922 | 980 | 976 | 951 | 916 | 964 | 2882 | 1936 | 1838 | 1847 | 1888 | 1990 | 2033 | 2017 |
| 1610 | VNG1776 | 868 | 876 | 944 | 951 | 849 | 905 | 891 | 915 | 1936 | 2735 | 1934 | 1844 | 1894 | 2046 | 2039 | 2023 |
| 1685 | hla1132 | 910 | 953 | 923 | 1003 | 924 | 971 | 921 | 957 | 1838 | 1934 | 2763 | 1920 | 1963 | 1968 | 2048 | 2067 |
| 1728 | rrnAC1711 | 977 | 1043 | 1008 | 1041 | 949 | 1028 | 1044 | 1024 | 1847 | 1844 | 1920 | 2710 | 2080 | 2000 | 1998 | 2058 |
| 1693 | Hmu2252 | 958 | 1028 | 951 | 995 | 991 | 984 | 944 | 1015 | 1888 | 1894 | 1963 | 2080 | 2764 | 1969 | 2044 | 2081 |
| 1768 | NP4498A | 968 | 1047 | 982 | 1038 | 979 | 1051 | 985 | 997 | 1990 | 2046 | 1968 | 2000 | 1969 | 2708 | 2100 | 2141 |
| 1685 | HVO_2313 | 878 | 938 | 926 | 935 | 918 | 944 | 934 | 965 | 2033 | 2039 | 2048 | 1998 | 2044 | 2100 | 2731 | 2264 |
| 1715 | Hbo2000 | 911 | 949 | 940 | 991 | 931 | 967 | 951 | 979 | 2017 | 2023 | 2067 | 2058 | 2081 | 2141 | 2264 | 2801 |
428 symbols consensus ----------------S-LADDWRAD----LDDVDAALINAFQGGFPVVERPFEPAAAAL #oth 1111111111111224586665465811111354.1423131.11..1541..2521541 HQ3121A :::::::::::::MSETG:ETT:GR:LDIE::TI::V::DEY:S:::IM::::RAVGQE: NP3064A :::::::::::::MSTPATD:::::G::::I::I:::::DGY:S::::T::::RTV:DD: VNG1911 ::::::::::::::::-MVSG:::DH::::I::T::R::DDY:S::::R:::::AL:DD: hla0433 ::::::::::::::::MS:DA:::::::::I:A::::::DEY:S::::ES::::RV:RDI HVO_2227 :::::::::::::::M:A:S::::DA::::I:E::::::DGY:S::::ER:::RVV::E: Hbo1934 :::::::::::::::M:A::::::::::::::E:::T::DEY:S:::::::::DVLGEV: Hmu2281 :::::::::::::::M:LRSG:::ER::::I:::::T::DGY:S::::E:::::TVGTR: rrnAC3307 :::::::::::::::M:LQSGE::EQ::::I:E::::::DE::SD::IQ:::::AVGD:: HQ3334A MTKTQGNNSTSTTENGETSNETDSDT:::::ST::R:V:::::::::::N::::S::T:: VNG1776 ::::::::::::::::-:-MGMDIG::::::::R:R:VL::::::::::Q:::::::E:: hla1132 ::::::::::::::::-:-MQEVD:::::::TAL:RGI::::::::::T::::::::::: rrnAC1711 ::::::::::::::::-:----MSE::::::GT::R:VL::::::::::::::::::::: Hmu2252 ::::::::::::::::-:----MSEE:::::GS::R:IA::::::::::::::::::::: NP4498A :::::::::::::::M:ET:G-----::::::RL:R:V:::Y::::::::S::::::E:: HVO_2313 ::::::::::::::::MIQ::---:::::::SRL:R:IV::::::::::::::::::::: Hbo2000 ::::::::::::::::MSR::VDT:E:::::T:L:R:I:::::::::::::::::::T:: consensus ----GVDITADELLDRVRTLDEAGVLRRFGALLNAPVIGGSATLAAMHAPEDRFDEVAEI #oth 133312232354235.14614271212...1121122.1.312.1.331.3311233.25 HQ3121A ::::--::SETNA:T:::Q:R:T:IF:::::V::P:::-::S::::VS:::::::DI:T: NP3064A ::::--G::ES:A:T::ED:Y:Q:IF:::::V::P:::-:AS::::VS::D:::E::::T VNG1911 ::::--:T:PSDV:::::S:RDD::F:::::V::P:::-::S::::VA::D:::::::DV hla0433 TAET::::D::AV:::::D:R:R::F:::::V::P:::-::S::::VR::::::N::::V HVO_2227 ::::--G:DE:DA:::::R:RDD::F::::PV::P:::-::S::::VS:::E:::::::: Hbo1934 ::::--GVSE::A:A:::S:R:K:IF:::::V::P:::-::S::::VS::::::E::::V Hmu2281 ::::--G:D::DA:E::QR:LDD::F::::PV::P:::-::SA:::ISV:DE::::C::: rrnAC3307 ::::--GVS:GTA::::K::RDD:IF::::PV::P:::-::S::::VS:::::::::::: HQ3334A :EDR:::::P::::N:I:::NHND::S:::::V::EE:::T:::V:::::KN:::S:::A VNG1776 :RSR::EFS:T::R::::::::N:::T:::::I::EE:::A:S:V::::::H::::I:DT hla1132 :RER:I:V:GP::CE:::E:::::T:S:::::V::EE:::A:S:V::::::::YE:I::T rrnAC1711 :ADH::::D:::::A::QD::D::::T:::::I::EA:::T:::V:T:::::SY::H::: Hmu2252 :RDR:I:V:EG::VE:IARM::::T:T:::::ID:EA:::M:::V::::::E:::::::R NP4498A :ADH:::V::T:::K::Q::::E:::T:::::I::AE:::A:::V:::::::::EA:::Q HVO_2313 :RER:::VS:AD:CE:::::::E:::S:::::V::EE:::T:::V:::::PE:::::::Q Hbo2000 :RER:::V::S::VE:::H::D::::T:::::V::EE:::T:::V::::::::Y:::::Q consensus INGYRQVAHNYRREHPHLNMWFVVSAADR--------ERRDEILAEIEEETGCETLNLPK #oth 1.4342.1...2.2.132.1...11124411111111542551.42.154..351132.1 HQ3121A ::E::::N:::::D:-DW::::::T:SA::::::::::K::D::DS::TK:::DV:KV:M NP3064A :::::::N:::::D:-EW::::::T:GSL:::::::::T:NA::E::AA:::::V::::M VNG1911 ::::Q::N:::E:A:-RY:Q::::T:G:::::::::::T::S:::D:ADR:::AV::::M hla0433 ::::Q::N:::::D:-EW:Q::::T:GS::::::::::T::A:::::::R::::V:A::M HVO_2227 :::::::N:::::A:-DW::::::T:GS::::::::::T::R::D::::R::::V::::M Hbo1934 :::::::N:::::D:-EW::::::T::S:::::::::KK::::::::::Q::LTV::::M Hmu2281 V:::E::N:::A:D:-EW::::::T:ST::::::::::::::::::::SR:::SV:A::M rrnAC3307 :::::::N:::A:D:-EW::::::T:GS:::::::::Q:::::::::::R:::SV:V::M HQ3334A V:DH:E:::::E:::::::::::::V::A::::::::D:VETV:N:::Q:::Q::Y:M:: VNG1776 V:DIQA:::::E:::::::::::::V:::::::::::-EVADV:::::A:::Q::Y:::: hla1132 V:EFTA:::::E:::::::::::::V::HPDPDKDGSD:V::V:::::AA::Q::Y:::: rrnAC1711 ::A:PE:::::E:::::::::::::V:EE::::::::S:VK:V:::::A:::E::Y:::: Hmu2252 V:DF:E:::::::::::::::::L:V::E::::::::D:IPAV:::::DA::Q::Y:::: NP4498A V:SH:E:::::::::::::::::::V::A::::::::DAVERV::D::D:::Q::Y:::: HVO_2313 V:DH:E:::::E:::::::::::::V::E::::::::S:VE:V:GD::D:::QA:Y:M:: Hbo2000 V:AH:E:::::E:::::::::::::V::E::::::::S:VE:V:G:::::::QP:Y:::: consensus LTDFYIDAEFPV-NDDPFARES-------------------LDLSDLGATRISETARGDL #oth 341121211.2221412442321111111111111111111356134423132253354. HQ3121A :::Y:::L::::V:T:T::::::::::::::::::::::::VSET:VS::::::E:T:G: NP3064A :::::::L::::V:G:R::::::::::::::::::::::::VSETTAD::::::::AA:: VNG1911 :::Y:::L::::V:S:R:::::::::::::::::::::::::AHTAVD::::::::T::: hla0433 :::Y:::L::::V:G:R:::::GEARSASDSASGERSDPRAS:HT:VS::::::N::::: HVO_2227 :::Y:::L:::IV:::R:::::::::::::::::::::::::GAT:VS::::::D:T::: Hbo1934 :::Y:::L::::M:::R:::::::::::::::::::::::::SETAVN::::::E:T:N: Hmu2281 :::Y:::L::::V:T:R:::::::::::::::::::::::::QST:VS::::::S:AA:: rrnAC3307 :::Y:::L::::V:G:R:::::::::::::::::::::::::ETT:AT::::::D:AA:: HQ3334A QQE:RVE:K:LL:-:G:I:DGD:::::::::::::::::::I:C::I:P:-PEPIN:RT: VNG1776 QQE:RVE:K:L::-:G:IPDGD:::::::::::::::::::V:::H::T:-PEP:G:DT: hla1132 VRE:HVG:K:L::-:G:VPDGE:::::::::::::::::::I::::::PA-V:ASG:ST: rrnAC1711 QQE:HVG:K::::-EG:-QTQD:::::::::::::::::::I:C:A::PD-VTP:DSQS: Hmu2252 QRE:RVE:K::::-EG:LEDD::::::::::::::::::::V:::A::PD-VTP:D:DG: NP4498A QQE:RVE:K:L::-:G:IPDGD:::::::::::::::::::V::::::PD-A:P:D::T: HVO_2313 RHE:HVG:K:LL:-:G:ISDGD:::::::::::::::::::::::H::PD-VEP:DART: Hbo2000 QDE:RVE:K:ML:-:G:VPDGD:::::::::::::::::::V::::R:PS-VTPED:RT: consensus TPLERDLLLEIQDGLPLSETPYRDVAAAIDADVD--WVLETIERLNADGCIRRVGCIPNH #oth 27424322211.2.2.2241..312.43225334114.3522521473.211.1.111.. HQ3121A SR::AE::V:::::F:::V:::H:I:T:VES:::AAA:VDAVDQ:RS::::K::::VV:: NP3064A S::DEAI::::::::::T::::::::::V::P:A::S:C:S::A:R:::::K:I::VV:: VNG1911 AT:DAE:::A::::F:::A:::::I::D:::::S::A::DAV:::L:::::K:::::V:: hla0433 ::::G::::A::::F:::S:::A:::SE:::PIE::D::AAV:Q:L:::::K:I::VV:: HVO_2227 SD::AR::V:::G:F::TK:::::::D:L::A::::D::VAV:::L:::::K:I::VV:: Hbo1934 SS:DAAV:V:::::F:::A:::::::D:V:::::::D::AA:Q::LD::::K:I:::V:: Hmu2281 :::A:R:::A::::M:::A:::::L::SV::P:P::D::A:::::RE::::K:I::VV:: rrnAC3307 SE:D:R::::::S:F::VA:::::::D:V::::S::E::SA:K::QRT:::K:I::VV:: HQ3334A ::P::::IV:::G:::I:::::H:::D::E::PS::::I:::A:F:LE:K:::::VV::: VNG1776 ::A::::VVAV:::::VV::::CA::DD:GR:PE::::VA:LR:F:ES:MV::::V:::: hla1132 :LD::::VV:::G:::IT:M::A::::::G:E::::::I:::K:F::E:KV::::V:::: rrnAC1711 :AD:L::V::::::::VTA:::A::::E::::::::::::::Q:F:ME:KV::::V:::: Hmu2252 ::D:L::V::::G:::VT::::::::D::::ETE::::V:::K:FERE:KV::::VV::: NP4498A ::E::::VV:::::::VT::::A::::ELGV:T::::::R::Q:F:ES:K:::::V:::: HVO_2313 ::D::::VM:::G:::IT::::A:::E::GQEPA::::V::VK:F:LE:KV::::V:::: Hbo2000 ::D::::V::::G:::I:A:::A::::ELET:TE::::VR::K:F:QE:KV::::V:::: consensus YALGFDENCMTVWDVPDDELDERGPAVAELPFVTHCYHRPRRPEQVWPYNLFAMIHGRSE #oth 231.133.1.1..2..1362343.44113111..1..4...11223.3.12.1.1...34 HQ3121A IVT:::A:::V::N:::NK::TY:ET:G:F:Y::L::::::::::G:S::::T:::::ES NP3064A IVT:::A:::V::::::ED::T::E::G:::Y::L::N:::::D:D::::::T:::::DP VNG1911 VVT:::A:::V:::::::::::::V::G:::Y::L::::::::D:D:Q::::T:::::ES hla0433 VVT::TN:::V:::::::::::::E::GS::Y::L::::::::::E:E::::T:::::EA HVO_2227 IVT::RN:::V::N:::::::A::E::GS::Y::L::::::::::G:E::::T:::::DA Hbo1934 VIT:::A:::V::::::::::V::ED:GR::Y::L::::::::::D:Q:S::T:::::EA Hmu2281 V:T:::S:::V:::::::::::::RT:G:::Y::L::::::::::D::::::T:::::ES rrnAC3307 IVT:::N:::V:::::::A:::::Q::G:::Y::L::::::::::D:Q::::T:::::EA HQ3334A :S::YT::G::::::::AQVETI:::::S::::::::::::H-:D::S::F:::T::::V VNG1776 ::::YT::G::::N::::AV:DV:::::G:D::::::Q:::H-DG::E::F:::T::::: hla1132 ::::YT::G:::::::E:A:::V::V::R:D::::::E:::H-AG::E::F:::T:::T: rrnAC1711 ::::YS::G::::::::EVI::V:::I::FD::::::E:::H-DG:::::F:::T::::: Hmu2252 ::::YS::G::::N::::VVE:V:::::SFD::::::E:::H-DG::E::V:::T::::: NP4498A ::::YT::G::::S:::EK:::V::E::G:D::::::E:::H-:G:::::F:::T::::: HVO_2313 ::::YS::G::::N::::LVA:V::EI:S:D::::::R:::H-:G:::::F:::T::::: Hbo2000 ::::YT::G::::N::::VVQ:V:::::S:D::::::R:::H-:G:::::F:::T::::: consensus DESDERIDELAAEMLPYW-V----------DHDRLFSTEILKQTGARYDERAGANT---- #oth 3213311342356452312132311111112122.1.132..1..113222255542111 HQ3121A SAV:SK::N::::H::F-:-::::::::::E:E::Y:::T::::::::::LV:TAE:::: NP3064A :AV::K:::::D:A:::-:-::::::::::::E::Y:::T::::::::::IL:S--:::: VNG1911 SAV::K::::::TE::F-:-::::::::::E:E::Y:KRT:::::::::DLVD:AE:::: hla0433 EAV:AK::::::DH::F-:-::::::::::T:E::Y:::T::::::::EDLVADGE:::: HVO_2227 :AV::K::::::DH::F-:-::::::::::::E::Y::AK::::::Q:EKLV:SDD:::: Hbo1934 :AV::K:::::::H::F-:-::::::::::::E::Y:::T::::::Q:E:LV:SEE:::: Hmu2281 :AV:AK:::::N:Y::D-:-::::::::::::E::Y::AT:::::::::DLV:N--:::: rrnAC3307 :IV::K:::::TDH:::-:-::::::::::::G::Y:::T:::::::::DIV:Q--:::: HQ3334A E::ER::QMIHEI:NEH:D:TDD::::::::W:S::::Q:::K::I:I::::T:::V::: VNG1776 A::EA:VERVRSV:DDH:D:TDD::::::::W:T::::R:::K::I:L::::D::::::: hla1132 A::ER::A:VKEL:DE::E:GES::::::::W:T::::R:::K::I:IAD::DS:::::: rrnAC1711 A::Q:::QQVRDR:AEH:D:SED::::::::W:T::::R:::K::I:L::::RQ:::::: Hmu2252 A:::R:VEQVRDR:AE::D:SES::::::::W:T::::::::K::I:M::::E::VIDPA NP4498A :::KR::QQVKST:EE::D:GDD::::::::W:S::::::::K::I:L::::T::::::: HVO_2313 E::EA::EQVREV:SD::D:GDD::::::::W:T::::R:::K::I:L::::E::::::: Hbo2000 A::Q:::EQVRDV:AE::D:GDQTTDDEQG:W:T::::R:::K::I:MA:::D::::::: consensus -------- #oth 11111511 HQ3121A :::::R:: NP3064A :::::::: VNG1911 :::::::: hla0433 :::::::: HVO_2227 :::::::: Hbo1934 :::::::: Hmu2281 :::::::: rrnAC3307 :::::::: HQ3334A :::::S:: VNG1776 :::::E:: hla1132 :::::A:: rrnAC1711 :::::ETA Hmu2252 DEPTRD:: NP4498A :::::E:: HVO_2313 :::::E:: Hbo2000 :::::E::