| ||||||||||||||||||||||||||||||||||||||||
| Pairwise sequence scores | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Consensus score | 2955 | VNG0541 | hla1649 | hla2387 | HQ1564A | HVO_0818 | Hbo0716 | NP1632A | Hmu0978 | rrnAC3505 |
| 1936 | VNG0541 | 3047 | 1885 | 1389 | 1326 | 1471 | 1382 | 1492 | 1180 | 1302 |
| 1762 | hla1649 | 1885 | 3192 | 1219 | 1169 | 1270 | 1212 | 1296 | 1079 | 1185 |
| 1913 | hla2387 | 1389 | 1219 | 3073 | 1502 | 1616 | 1629 | 1415 | 1134 | 1332 |
| 2005 | HQ1564A | 1326 | 1169 | 1502 | 3053 | 1796 | 1975 | 1392 | 1136 | 1264 |
| 2095 | HVO_0818 | 1471 | 1270 | 1616 | 1796 | 2953 | 1953 | 1415 | 1127 | 1265 |
| 2064 | Hbo0716 | 1382 | 1212 | 1629 | 1975 | 1953 | 2946 | 1407 | 1115 | 1281 |
| 1839 | NP1632A | 1492 | 1296 | 1415 | 1392 | 1415 | 1407 | 2982 | 1315 | 1447 |
| 1477 | Hmu0978 | 1180 | 1079 | 1134 | 1136 | 1127 | 1115 | 1315 | 2798 | 1425 |
| 1754 | rrnAC3505 | 1302 | 1185 | 1332 | 1264 | 1265 | 1281 | 1447 | 1425 | 2955 |
451 symbols consensus ---METTEAFRGLECTACG---E--DADAATTRCPDCGGILDPAYDLDAVDLDPETLA-- #oth 11113.3521522713321111421652643433323236.4232122642355432411 VNG0541 :::::::R::E::::VD::::::SFA:A:::H:::E:::::::::::ENL:V:A::FG:: hla1649 :::::::D::T::S:VG:::::GTF:PET::HQ:::::::::::::::R:::S::D:::: hla2387 METT:::T::::::SR:S:RVH:::T::PT:VSAEEQARG::::::Y::::--::::L:: HQ1564A ::::K:S:S::::Y:::S::::D::QH:LTA:GPT:T::R:E:M::TSGIEWGMD:S:FE HVO_0818 ::::Q:SDS:S::V::ET::::D::EY:::A:GPS:ADAP::::::::::EW:A:::::: Hbo0716 ::::::R:::L::K:AET:::::::RY::S::GES:A:VH:T:V:::::::WADGG:::: NP1632A ::::A:F:------::D:::::T::VD:DVP::::::A:V:NAV::Y:TI::TQAA:::: Hmu0978 ::::::SP:::EFA:AD:E::::TF:::EIEL:::A:::L:V--ARY:------HD:R:: rrnAC3505 :::::::A:::::I::::::::A::ET:STAD:::::::V:V--G:Y:VP::T::A:P:: consensus -----------ARPFDGM-------WRYAELLPFA--APVSAGEGATPLVAAPALADELG #oth 11111111111443333311111112237411.1543634232..4.1114435..2142 VNG0541 :::::::::::::R::SL::::::::::::::::TRGSA::MD::::A::PC:G:::::: hla1649 :::::::::::E:::ES:::::::::::G::::::PE:A::L::::::::EC:::::AM: hla2387 :::::::::::ES:R::PAGTGRGH::FDA::::PADVAI::::::::::PTER:::::D HQ1564A RGSDADTDNDLDITTRS:::::::::::N:::::I::D:IT::::D::::T::Q::A:V: HVO_0818 ::::::::::::::::T:::::::::::R::::::::E::T:N:::::::::D:::E:AE Hbo0716 :::::::::::D::T:T::::::::::::D::::S::S:LT:N::G:::::SAE::A::: NP1632A :::::::::::--DR::T::::::::KHH:::::V::-:DGI:::T:::::::R:::::: Hmu0978 :::::::::::TE:TRPP:::::::------::L:RERRH:LD::E::ATDC:T::::I: rrnAC3505 :::::::::::--DVT:P:::::::G::EP:R::SGD:T:TLD:::::::PV:E:::::: consensus VGSLLIKDEGRNPTGTFLDRGLSLAVT-----AARQAGAELVALASTGNAGQSAAAYAGR #oth 235142.1.12...1234..232313211111.12451137213212..11.1211..23 VNG0541 ::E:Y::::::::::::R:::QTV:M::::::::A:H::SE:::::::::::::G::::: hla1649 ::RV:L::::A::::::K:::Q:::M::::::::::H::ADI::N:A:::::A:::::A: hla2387 :DAVYV::::::::::V::::::V:L:AVAAR::EGQDV:PL:C::P::::::M:::::: HQ1564A :ET:A:::::::::::I::::::S:::::::::::ET::D:L:::TP::::::::::::I HVO_0818 :::::::::::::::::::::F:::::::::::::E:D::V::H::P::GA::::S:::L Hbo0716 IK::S:::::::::::V::::::P:::::::::::E:D::::::::A::::::::S::SM NP1632A ::QVF::N:AH:::::IT::AAA:VAA:::::::ER:D:DTL::PT:::G::::::::A: Hmu0978 ADR::L:::::::::AVT::::AV::S::::::GAAV::DA:S:PT:::G:::::::::: rrnAC3505 :D:VYV::::::::ASLG::K:::::::::::::A:R:::R::TP::::GA:AN::::A: consensus AGLRSYAFVPSRAPFSNKAMVNVHGGDMRVVG-----GRYPDAADAL----EEQLAAD-- #oth 113413311...33.52...21...2213.23111111122..54241111314354342 VNG0541 :::DAHV:L:::SG:TT:::::::::::N::Q:::::::IG::NA:F:::::DAMDEHGE hla1649 :D:DAHVYL::::G:TQ:::TE:::A:LT:TDPIDGNSQIG::GR:Y::::ADAMD:HPD hla2387 :D::::::::::CA::::::T::::::::::::::::::F::::::V::::D:::ET::: HQ1564A ::::::::::::T::::::::::::SE:::A::::::::::::E:::::::A:::QS::: HVO_0818 VDA:::G:::::T::P::::::::::Q:K::::::::::::::LS::::::H:::KS::: Hbo0716 :D::::::::::::::::::::::::E::::::::::::::::E:G:::::H:::QS::: NP1632A :::L:RS::::::N:I::::I::::::::::E::::::::D::RE:YQTAR::LP:::EE Hmu0978 ::VTAHSY::::C::V::::I:::::E:N::E:::::::::::LA:Y:::::DSDG:R:: rrnAC3505 ::IE:KG:::::C::L:::::::::::::::E::::::::D:::SVS::::D:E::DASD consensus -WFSLQEFDNPYRHDGAKTLAFELAEQLDWEAPDAVVVPTGHGEVLAGVAKGFRELRELG #oth 2243233143.1.22.4.3332.233512253.14113.214.34231343125334341 VNG0541 A:Y:::A:AT::::E:K:::LY:TV::::::T::H::Y:::D:GG:V:MW:AAT:::::: hla1649 ::Y:AKT:VT::::E:K::M:L::L:::::::::G::Y:::G:VG:V:MH:AAH:V:::: hla2387 :YTD:G::VT::::::V:::::::VAD::-A:::V:I::::S:::V::IY:::S::ERV: HQ1564A ::YT::::::::::::I::V::::::AHG:DM:::I:::A:T:::V::::::::::TAAD HVO_0818 ::HT:::::::::::::::I:Y:V::R:::SV::W::::VST::LAY::Y:::SD:V::: Hbo0716 :::T::::::::::::I::::::V::S:::SV::::I:::ST:::VT:::N:::Q::::: NP1632A A::PAGP::S:F::E:L:P:YY::V:::::TV:::::A::::::AV::LW::A::FESV: Hmu0978 :-:PVGP-SS:::RA:V:R:GY::---:TGP::S:I:::::::I:::AIHTAIE::::T: rrnAC3505 G:V:VAP-GH:F:IE:::SV:::T:DD:::T::::::H::::::T:V:LEH::QAAA:S: consensus LTDSTPRLYAAQAAGCAPIVDAAEEGADEHEPW--DQPDTIVGELEIPDPAGGALALEAV #oth 332341521...241111123.7532546312311351..21131111..4215321412 VNG0541 I:ADV:AM:::::E::::::R:FQ::R:A:::::::T::::C:GI:::::::SR:V:::L hla1649 W::ELVPM::::::::::V:::Y:A:::R:::VPD:EV::ACNGIA::::GASP:I:D:I hla2387 AI:DV:KIV::::::::::AA:I:RDL::P:::::ST::::C:::::A::::::A:V::: HQ1564A IL::M:T:::::PS:::::::::T:::V:V::::::N:::::::::::::N::TV::::I HVO_0818 :VE:M:K:V:::SV::S:VAT:W:ADS:T::A:::N::::::::::::::T::S:::R:: Hbo0716 :I:EP:SI:::::S:::::YA:H:R:ERDV:::::EH:::::::::::::K:::A:VH:: NP1632A ::E:::::::::PD::::::::LDTDS:-P:::::SV:::V::S:::::::::LP:V::: Hmu0978 AL:V::::::::P:::::::::CGTADAVAAT-::E:::::::P::V::::V:S::VA:: rrnAC3505 :::::::I::::PDST:A:A:::S:::S:PATI::EH::::::P::V::::A::A::DSL consensus RESGGDAVAVSDDDILEAAVAAAQHAGLEVGATGGAAAAGAWALADDGAFDEDDTVVLVN #oth 2323.522133.522.321342146213.41311121511134.12324124212.2211 VNG0541 :::N:G:::A::EE::::GT:V:SR::P:M:::CA:::::::E:::RD::G::::::V:S hla1649 :::E:G:::TT:RE::D::IEV:RAE:::::::CA:CVS::F:::ES:E:GP::::::L: hla2387 :::::T::G:E:::::AS:::V::NEVM:M:::::::P::::::KE::F::G:E::I::: HQ1564A D:CD:EII::D::A::::::V::::::::I::A::::I:AVDK:::R:V::PT:::IA:: HVO_0818 :::::A::::::::A::S::T:::S::V:::PA::V:L::::E:::E--::::::::V:: Hbo0716 EQTD::IL:ID:E::::S::V:::T::V:::TA::::M:A::Q::E::VVG:T:D::V:: NP1632A :A:::EG:::D:Q:L:DS:ATV:::E::::SIAC::::::::D::EE::::A:::::::: Hmu0978 D:T::RG:::::S:A:Q:::D::GT::V:LS::::V:L:::RE::AE--:EG-E::A::: rrnAC3505 DR::::G:::::K:::AG::DGCEM-:P:T:::::T:I:::R:::::::::D::V::::: consensus TEAGNKTADILRSHLMGQGI----------- #oth 23213.43.31.11.1221111111111111 VNG0541 :GTA::A::V::::::SK::::::::::::: hla1649 :G::::DV:A::A::GEREVEAEATNDGGAP hla2387 SD::L::P:V::::::::::::::::::::: HQ1564A ::S:T::::V:::::::K::::::::::::: HVO_0818 ::S:T:N::::::::::::V::::::::::: Hbo0716 ::S:T:::::::::::::::::::::::::: NP1632A :GT:::D:::V::R::S:::::::::::::: Hmu0978 PV::S:ED:L::::::S:::::::::::::: rrnAC3505 PV::S:E::L::::::S::::::::::::::