| ||||||||||||||||||||||||||||||||||||||||
| Pairwise sequence scores | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Consensus score | 5383 | HQ2295A | HVO_B0051 | Hbo1616 | hla2076 | rrnAC3018 | Hmu2005 | VNG1565 | NP1094A |
| 3336 | HQ2295A | 5675 | 2725 | 2681 | 2633 | 2959 | 2857 | 2934 | 2752 |
| 3755 | HVO_B0051 | 2725 | 5265 | 3789 | 2922 | 2969 | 3030 | 2856 | 2889 |
| 3729 | Hbo1616 | 2681 | 3789 | 5521 | 2825 | 2944 | 2894 | 2799 | 2862 |
| 3719 | hla2076 | 2633 | 2922 | 2825 | 5774 | 3100 | 3184 | 3102 | 2999 |
| 3843 | rrnAC3018 | 2959 | 2969 | 2944 | 3100 | 5374 | 3372 | 3101 | 3088 |
| 3909 | Hmu2005 | 2857 | 3030 | 2894 | 3184 | 3372 | 5385 | 3153 | 2941 |
| 3811 | VNG1565 | 2934 | 2856 | 2799 | 3102 | 3101 | 3153 | 5186 | 3173 |
| 3722 | NP1094A | 2752 | 2889 | 2862 | 2999 | 3088 | 2941 | 3173 | 5309 |
816 symbols consensus ---------------MVDFG--K----GRSQGLPFAAIVGQDELKRALLAVAANDDLDGL #oth 1111111111111111334353113124535544.411...43..51.12.2212311.. HQ2295A ::::::::::::::::ANSK::-::::KT:TPVA::D::::::::N::IS:VV::S:::: HVO_B0051 :::::::::::::::-----::-::::MTT:T:::S:::::::::Q:::::G:::::::: Hbo1616 :::::::::::::::-----::-::::MSAET:::P:::::E:::::::::GV:EQI::: hla2076 MCGITLLNLYCATTT:::::SH:KPSHAGR:RPR:DDV:::HA::E::::::TD:::::: rrnAC3018 :::::::::::::::::V:VAG:::::KA:::PT:::V:::RD::DG:::::TD:::::: Hmu2005 ::::::::::::::::I:::GG:KASP::AGE:G::D::::A:::E:::T:::::::::: VNG1565 ::::::::::::::::::L:RS:KLSPD:RA:A::P:V::::D::TG:::::::AS:::: NP1094A ::::::::::::::::I:N:D:-:::::K:VST::G:V:::ER::::::T::TD:G:G:: consensus LVRGEKGTAKSTAVRALADLLPDQRVVADCPYGCPP--DDPDRQCADCRERTDPPVETRP #oth .13.........2111.321..1.211.2.211.1.1113134..31.13.4113115.1 HQ2295A :IQ::::::::::::::QTI::E:::::E:S::::::::A:SM:::::Q::MN:S::L:: HVO_B0051 :::::::::::::::::S::::E:A:::::::::::DP:::A:::DS::A:D::A::R:S Hbo1616 :::::::::::::::::T::::E:T:::A::::::::::::T:::DS::::D:YD::::: hla2076 ::Q:::::::::T:QG::::::::::::::DF::H:::E:ASL::V:::D:EN::TAM:: rrnAC3018 ::::::::::::::::::::::E::A:::::::::::::R::E::E:::T:S:::::::S Hmu2005 :IQ:::::::::::::::A:::::TA:::::::::::::E:::::E:::::::::T:Q:: VNG1565 ::T:::::::::TA:::::::::::A::::::::::::E::T:::::::D:::::::S:: NP1094A ::A:::::::::L::G::::::::::I:::::R:::::::::S::::::::::::::::: consensus VPLVTLPLGATRDRVVGTLSVADALAGDAEFDPGLLARANRGILYVDEVNLLDDHLVDVL #oth ..11......1.1.11.1...31..3.132.2.....1.1..2.........1.....21 HQ2295A :::I::::::::E::::S:::EA::E:ES::::::::A::::L:::::::::::::::II HVO_B0051 :::::::::::::::A:::::::::D:E:S::::::::::::::::::::::::::::L: Hbo1616 :::::::::::::::A:::::S:::::::S::::::::::::::::::::::E:::::L: hla2076 ::::::::::::E:I::::::::::D::H::::::::::H::V::::::::::::::::: rrnAC3018 :::::::::::::::::::::::::D::H::::::::::::::::::::::::::::::: Hmu2005 ::::::::::::E:::::::::::::::Y::::::::::::::::::::::::::::::: VNG1565 ::F:::::::S::::::S:::T:::::::::S:::::A:::::::::::::::::::::: NP1094A ::::::::::::E::::::::S:::S:E:N:E:::::::::::::::::::::::::::: consensus LDAAASGVNRVERDGVSVTHPAEFTLVGTMNPEEGDLRPQLRDRFALQATVTGCEDIDDR #oth .1.....3.......21.2...3...1........1....11.....222.3144223.. HQ2295A :::::::E::::::::::::::S:::I::::::::::::::K:::::::::S:L:E:P:: HVO_B0051 :::::::::::::::M::E::::::::::::::::::::::::::::::::V:SR:V::: Hbo1616 ::::::::::::::::::E:::::::I:::::::::::::::::::::::::::RSVE:: hla2076 :S:::::::::::::I::::::::::::::::::::::::::::::::T:::::S:L::: rrnAC3018 :::::::Q::::::::T:::::::::::::::::::::::::::::::TE:SA:::L::: Hmu2005 :::::::T::::::::::A:::D::::::::::::E:::::::::::::::::AD:L::: VNG1565 ::::::::::::::::::::::::::::::::::::::::F::::::RVA:A:S:E:A:: NP1094A :::::::E::::::::::::::A::::::::::::::::::::::::SVE:A:ET::E:: consensus VAIIDQALADGDDADD---------------AAD-PDDAVR---ERLRTARDLLPSVTLP #oth .311121.34352534111112222212222633453446322253234.242144.4.4 HQ2295A :DV:E:V:E:DQ:::::::::STDQTNIHLSNNSTDTNSHTAVH::IVR::E:::::::: HVO_B0051 :E:::R:::G:::PET:::::::::::::::V::AHREGTAALETA::E:TAR:D::A:: Hbo1616 :T:::R::DGSH::RNTDGGDTDGVSNEAGL:::QY::::ATLEQDV:::HNR:ER:::: hla2076 :E::::::DEATETP::::::::::::::::STS:TGRDSG:::::::D:::RIGD:V:E rrnAC3018 ::::::::GES::EER:::::::::::::::QTE:::RGPG::::::::::::::E:D:A Hmu2005 ::::E::::::::G:R:::::::::::::::R::V:::ER::::AQ:CE::AG:SA:::S VNG1565 :E:M:R:::-:F:G:Y:::::::::::::::::::-TA::::::D::V:::::::D:D:: NP1094A :::::G::GKAEPD:::::::::::::::::---:-T:SY::::K::QA::S:::::E:T consensus REFKRDIAELCRDAGVDGHRADIATARAARTLAALDGRTTVLEGDVRRAAAFALPHRLRS #oth 522332..1..2...11...1.1.1..1.111...1..32.323.224..32..1..121 HQ2295A SS:TT::::::::::::::::::::::::I:F:::A:::::I::::::::EL::::::Q: HVO_B0051 T::::::::::V::::E:::::::I::::::::::::::K:::S:::E:::L::::::Q: Hbo1616 TD::VE:::::L::::E:::::::I::T:::::::::::K:IG::::D::EL:::::::: hla2076 :SLRE:::::::::::::::G::::::T::A:::::::DR:E:N::ET::R::::::::A rrnAC3018 :::REQ:::::::::L::::G::::::::::F:::::::::::S:IE:::E:::::::T: Hmu2005 P::TTE::::::::::::::::::::::::::::::::VK:::S:::::::M:::::::: VNG1565 ESLA:E::::::::::::::::V:::::::::::::::P::T:A:IE:::G:::::::Q: NP1094A D:Q:::::D::L::::::::::::::::::A:::::::P::TD::LQQ::::::A::M:: consensus RPFEDAPDVDDVLDDHFDDEE--GEDGDE----DADDGEADAEGG-----------DDDS #oth 2..1.2..32212.1..1134423322241111432232534443111111111132144 HQ2295A T:::::::PE::::E:::::-:::DST:N::::T:::AD::TQKN::::::::::D:::G HVO_B0051 :::D:D::::::::::::ED:DRDD::GG::::::N::D---GE::::::::::::::AG Hbo1616 :::D::::T::::::::E::SDS::S::GETGD:::T:DDEPGD::::::::::::E:SA hla2076 Q::::::::EE:V:E:::::GG:A:::ES::::::E:::G:::D:ERRAENGDDESG:AD rrnAC3018 :::::::::::::::::E:::::::AEE:::::S:::E:SGE:::::::::::::::A:: Hmu2005 :::::E::ASEL:::::::-:S::G::ES::::ER:ET::::D:D:::::::::::G:Q: VNG1565 ::::::::PE::V::::::--::--:::Q::::SDEE:-------::::::::::::AET NP1094A T:::::::A:S:I::::E:GNE:A:S:::::::KT::::T:::::::::::::::A:A:: consensus DGEAGGDDDADASDADDASAGDGD---DGGAADDDAGGAERP----AADDDGDADDRGGP #oth 4323133435253443434523541113345554.5425555422246245665554232 HQ2295A ::TD:NNSQV:R:QSEQS:ND:SNRSTEQ::NN:::NIP:HREDRADI:ETQ:GSN:PP: HVO_B0051 :ADD::S::G::::GEERAE:---:::--:DS:A::P::---:::::P:S:AGG:::::E Hbo1616 :::T:::T::SDA:GT:SDT:::::::ES::::::SD:SQ::DRTGSS::ERT:EESEAE hla2076 A:D:::::ER:::GTG:REG:A:::::A:DG:L::E:K:GDAT:::::G::ES:::TE:D rrnAC3018 :E:::AG:ESVNDG::SEGSE::S:::EQQEQRP:DS:ESGED:::GD:ES:ERGEQPT: Hmu2005 EADGE:G::::GDT::EE:G::TP:::::-----:D::QT:QP:::::::G::DAPSPP: VNG1565 SD:::::---:PEPT:N:E:DAEP:::::-----:T::::A:::::----------T::: NP1094A G::::S:G:G::ATDE::::EPDS:::::ESGSE:GP:----::::SE:TTDPSGGD::D consensus SSAD-DEGDADPADA------EGG----NDESGDEGGE-----DDDPEEATPLLPGQNRA #oth 634333244743414222111233222242442364342222243342421.11...423 HQ2295A Q:G:SGSDESTS::NDDI:::DDDESHP:G::::NQNGGDSDDES:T:QI::RV:::PST HVO_B0051 VGGA:::RGPEDG:S::::::::::::::S:D::TD:S:::::G:::D:::::::::::: Hbo1616 TA::::DQRG:SP:E::::::D:S::::S:DE::G:D:::::::GN:D:::::::::Q:: hla2076 :DRPA::::DE:R::SPRPSPGR:ARSDD:S:AN:QPRANPE:G:AA:GG:::::::D:: rrnAC3018 A::::SD:ERQE:E:::::::GD:::::EGAA::D:::GDPDQP::::N::::::::S:T Hmu2005 G:EA:GDAGE:SGE::::::::R:::::E::::--::::::::S:ERTGG:::V:::SPT VNG1565 DDSQ:S::SQA:::S:::::::A:::::D:PTDG:R:D::::::E:T:D:A::V:::P:G NP1094A ::RQPA::::::S:D::::::G:Q::::G:A:D:PKPS:::::::AD::::::V:::::Q consensus ---AVGDADAPDVDAPAADAEGGS---------GSG-RASARPSRDGRGARVRTER--AT #oth 21142133431333323354234511111111134.323225444542.11...1111.4 HQ2295A E::TAV:P:QSVTR::DINIDSQNERQNQSNDASN:GSQ:GKMDTTN::::::::::::A HVO_B0051 ::::::::ER:P:EDA:L:::TP-::::::::::D:S::AV:E::Q:::S:::::P:::: Hbo1616 ::::::A::E:P::DT:LRS:TP-::::::::::E:T::TVGE::H:::S:::::P:::: hla2076 :::D::E:A::ELSP:E:I::P::::::::::::T:S::::S::V:AN:S::::::TD:G rrnAC3018 :::::::SG:::::::SV:TD::::::::::::A:::::::TGT--K:::T::::::::G Hmu2005 :::P::ES::::LS::E:V:::RA:::::::::A::::G:VA:AV::E::::::Q::::N VNG1565 DTVEP:TGV:::A:::D:ERAT:D:::::::::-:::::::T::P:A::::::::::::: NP1094A ::::P:A::::::ES::V:TA:DT:::::::::::::--:::TQ:GD::::::::P:::D consensus PDDD-VDAAASVRAAASRGRSRVESRDLRQSVRAGDASALVVFAVDASASMRPAMRAAKG #oth 532431.12..1...223.3442221...3112213232.12.1........31.141.. HQ2295A :T:SD:::G::I:::::::ADQ:T:::::::::::ET::::I::::::::::KP::T::: HVO_B0051 ET:::I:VP::::::::A:::::TRS:::TA:SR:S:AT::::V::::::::A:::Q::: Hbo1616 NT:::I:VP::::::::N::TQIDRS:::T::NR:T:RT:I::V::::::::::::ET:: hla2076 TGGVS::::::::::SA::A:S::::::::::::::S::::L:V:::::::::::::::: rrnAC3018 R::E:::::::::::::::SG::::::::K:::::::ET::::::::::::::::K:::: Hmu2005 S:RQ:I:::::::::TA::G:G:::::::::::ER:SAV::::::::::::::::::::: VNG1565 :A::::::::::::::A::SDA:::::::::IN::S::::::::::::::::GP:::::: NP1094A T::SA:::::::::::KH::N:PTD::::R::::::SE::::::::::::::::::S::: consensus TVLELLEDAYQQRDEVAFVAFAGDDADVLLPPTDSVTLAARHLKDLPTGDRTPLPAGLRA #oth 1122..21..23..2112.11..23.1.21....1.2.......3..1..1...12.141 HQ2295A VAI:::K::::::::::L::::::N:::M:::::N:S:::::::E:::::Q:::T::IKT HVO_B0051 :::S::::::E:::::::::V:::E:E:::::::::::::::::E::::::::::S::D: Hbo1616 ::MS::::::::::::::::V:::E:E:V:::::::S:::::::Q::A:::::::S::D: hla2076 :::::::::::H::A:G::::::T::E:::::::::::::::::S::::::::::::::T rrnAC3018 ::::::K::::A:::::::T:::EG:::V:::::::S::::::::::::::::::D::T: Hmu2005 ::::::K::::E:::::::T:::EG:::::::::::::::::::::::::::::::::C: VNG1565 VA:D::R::::H:::I:V:::::::::::V::::::A::::::::::::::::::::::: NP1094A V::::::G::TE::S::V::::::::E::::::::::::::::::::::::::::::::T consensus AGRVLDRADPDASVVVVVTDGRANVADGSPTAATRSAARALAERDAHVVVVDAGD-DGAG #oth 162124.1.11222.11.1..11122132.123113.1351124332112.2..243441 HQ2295A TTE::S:::::TGI::L:::::::AVGER::::V::::TT::AHNP::::::::SRSR:T HVO_B0051 :R::I::S:A::AL::::::::VT:::::::GQ::::::S::TA::S:::::::::::I: Hbo1616 :H:LVT:::A:S:L:::::::::::::::::::::::::H::TS::S::L::::::::T: hla2076 ::::::::::A:::::::::::::::::::V:E::A:G:G:::::::::::A::ED::PT rrnAC3018 :CE:::::::::G::I::::::::T:::::V::::T:::T:G:AATRTI::N::EAGR:: Hmu2005 ::D:IR::::A:::::L::::::::::::::EE::D:::EI:A:GSS::::::::DGDT: VNG1565 :DD::A:::::::::::::::Q::AT:T-::::::T::S:::::G:::::::::::NAR: NP1094A :AE:V:::::::A:::::S:::::A::S-:::D:EA::A::::T::R::C:::::E:SR: consensus LTDAIVDETDGRRVPLAALSAERVDAAAGAARD--- #oth 113422232312211.22.112.1333337256321 HQ2295A V::T::SV:N:E:I::S::T:::::::VST:QSNR: HVO_B0051 V::IL:S:::A::I::SD::::::AE:ERF:DGQ:: Hbo1616 :::ILES::GA::IS::D::::::SE::ASVH:A:: hla2076 V:::L:EASG:E:::::::::A:::ESVREV::Q:: rrnAC3018 :L:LVAE:::ASV:S:D::T::::::V:SDQ--::: Hmu2005 ::GL:A::::::::::D::::::I::::::::TNEI VNG1565 ::SD:::AA::E::::D::::D::EH:V:Q::K::: NP1094A :LP:VA:R:A::L::::E:TP::::DEL:RVSR:::